KEGG   Clarias gariepinus (North African catfish): 128508054
Entry
128508054         CDS       T10780                                 
Symbol
helq
Name
(RefSeq) helicase POLQ-like isoform X1
  KO
K19178  POLQ-like helicase [EC:5.6.2.4]
Organism
cgar  Clarias gariepinus (North African catfish)
Brite
KEGG Orthology (KO) [BR:cgar00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cgar03400]
    128508054 (helq)
Enzymes [BR:cgar01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     128508054 (helq)
DNA repair and recombination proteins [BR:cgar03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   Helicases
    128508054 (helq)
SSDB
Motif
Pfam: POLQ_helical HTH_61 DEAD Helicase_C ResIII DUF7898 HHH_5 DNA_pol_lambd_f DUF4332
Other DBs
NCBI-GeneID: 128508054
NCBI-ProteinID: XP_053335241
LinkDB
Position
19
AA seq 1023 aa
MSRDTEVQSEIVVKRSSWSKKRNRDGMRSDFTPAKKRLSAEKCDTNEDRNIAQIKIEDTV
SEQCCSDSEDLFDGYDSLIADTSFLARLEECEQNHTSQTTKSNVDHLADFADDFHDASLR
DLPSSQLVFQQDMLNKSHPIHTEGTGNTSTPDVRTSKQSVCDDQNKPASKARRSMANQLK
RAMLENASSSNTMSKTVQKKEAAVSEEISAAVQTIKSVPPEGDLGPFFGLPSKVKDLIMR
LKRIEDLYEWQKACLNLDSVLQRKNLIYSLPTSGGKTLVAEILIFKEILCRRKDALLILP
YVSLVQEKVRGLASFGIELDFLVEEYAGSKGKFPPIKRRSRNSLYIATIEKGHSLVNSLI
ETKRLDNIGLVVVDELHMLGDGSRGAILEMTLAKLMFISESTQVIGMSATLGNVADLLSF
LRAENYTNDFRPVQLKEYVKLRDSIYEVDPKEEQCFRFSRVLTFKYSSGMQKLDPDHIIA
LATEVIPQQSCLIFCATKKNCENVAGMICKYLNKDFLKHREEEKVTLLSELRNSGNGSLC
PVLQKTVPFGLAYHHSGLTSDERKMLEEAYSSGVLCLLACTSTLAAGINLPARRSCTEDG
FFTATALFTIVQQSSIGFRVILRSPYVGAEFLKRSQYKQMVGRAGRAGIDSMGESILILQ
DRDRDRAKQLVCAPVENCYSNLLHEGTHGLLSLILSLVGLNITCTEEQILEFMSRTLLSV
QETQLCKQKSLQELTVESVEILKQKGLISTSPHEQAVLHVTKLGRATYKGSVDLRYSDVL
YKELSKGLEGLLLNSFLHLVYLVTPYDFVSQIKPDWMIYFSQLTKLSAAEQKMAATIGVP
ESFLVRKAAGQSVRKSIDPAVVNRLYLALVLYSLLNETNVWAVSDRFQLTRGLVQTLVSS
SSAFCSCVLHFTEELEEFWAYKALLAELTRRLTYCVQADLIPLMEVAGVMEFRAKQLYNA
GYKTLAHLANADPNVLVKTVEKLYKRQANQIVASAKMLLHEKAEALQEEVDELLGFPVDL
PSV
NT seq 3072 nt   +upstreamnt  +downstreamnt
atgagtagagacacagaagtccagagtgaaatagttgtgaaacgcagctcttggtccaaa
aagagaaacagagacggaatgaggagtgattttactccggctaagaagcggctcagcgct
gagaaatgcgacacaaatgaagacaggaatatcgcgcagatcaagatagaggacacagtc
tcagaacagtgctgcagtgacagcgaggacctctttgatggctacgacagcctcatcgcc
gacacctcctttcttgctaggctggaagagtgtgaacaaaaccacacctcacaaaccacc
aaaagcaatgttgatcatctcgcagacttcgcagacgatttccatgatgcatcattgagg
gatttaccaagctctcagctcgtgtttcagcaggacatgctaaataaatcgcaccccatc
cacacagaaggaactggaaacacatctactcctgatgtgagaacctcaaagcagtcagtc
tgcgatgatcagaacaaaccagccagcaaggccaggaggagcatggccaaccagctaaag
agagctatgctggaaaatgcatcttcctccaacaccatgtcgaagacggtccaaaaaaaa
gaggcagcagtgagtgaagaaatcagtgccgctgtacagacaatcaagtctgtgcctcca
gaaggagacctgggtcctttctttggacttccatccaaagttaaggatttaatcatgaga
ctgaagaggattgaggacttgtatgagtggcagaaggcatgtctgaatttggactcggtt
ctccaaagaaagaatctgatctactccctgccaacgagtggagggaagacgttggtggct
gagattcttatttttaaagagattctctgtaggaggaaggacgcactgctgattttaccc
tatgtatccctggtgcaagaaaaggtccgcgggctggcgagttttggtattgagctggat
ttcttggtggaggagtacgctgggagtaaagggaaatttcctcctataaaaagacgtagc
agaaactcgctttacatcgccacgattgagaaaggccacagcctagtgaactccctgatt
gagacaaagcgactggacaacatcggcctggtggtggtggatgagctccacatgcttgga
gatggtagcagaggagcgattctcgagatgactctggccaaattaatgttcatcagcgaa
agcacacaggttattggaatgagtgccaccctgggcaacgtagctgatctgctgagcttc
ctgagggctgagaactacaccaacgacttcagacctgtccagttgaaggagtatgtaaaa
ctgagggacagtatatatgaggttgatccaaaggaggagcagtgtttccggttctcacgt
gttctgacttttaaatactccagcgggatgcagaagctggacccggaccacatcatcgct
ctggctactgaagtgataccgcaacaatcctgtttgatattttgtgccaccaagaaaaac
tgtgaaaatgtagctggtatgatctgcaagtatctaaataaagacttccttaagcataga
gaggaggaaaaggtgacactgctgtccgagctgaggaatagtgggaatggctccttgtgt
cctgtgctgcagaagaccgtgccttttggcctggcgtaccaccatagcggtctgaccagt
gatgagaggaagatgctggaggaggcgtactcatccggagtgctgtgtctcctcgcttgc
acctccaccctggctgcaggcatcaaccttcctgctcgcagatcatgtacagaagacggt
ttctttactgctactgccttgttcaccattgtccaacagtcttctattgggtttagggtg
atcctccgctccccatatgtgggtgcagagtttttaaagaggagtcagtacaagcagatg
gtaggaagagcaggtcgtgctgggatcgattcaatgggagaaagtatcctcatcctgcag
gacagagacagagacagggccaaacaactagtgtgtgcaccagtagagaactgttacagt
aacttgctgcatgaaggaactcacggtcttctgagtctcatcctctccctcgtcggcctt
aacataacatgcactgaggagcagatcctggagttcatgtcaaggacgttgcttagtgtt
caagagactcagctttgcaagcagaagagtttacaagagcttacagtagagtcagttgag
atactgaaacaaaagggtctcatcagtacctctccacacgagcaggctgtgctgcatgtc
accaaacttggaagagcaacatataaaggctcagtagatttaagatactctgatgtcctc
tacaaagaactgtctaaaggtctggagggtctcctgctgaacagtttcctgcatttggtc
tatctggtgactccatatgacttcgtgtctcagatcaaaccagactggatgatctacttt
agccagttaacaaagttgtctgctgctgaacagaagatggcggccactattggagtgcct
gagagctttcttgttcggaaagcggctggacagagtgtgaggaagagtattgaccctgca
gtggtgaacagactgtacctggctttggtgctatattccctgctgaatgagacaaacgtg
tgggccgtctctgaccgattccagctgacccgaggccttgttcagacccttgtcagttcc
tcctcagctttctgctcctgcgtactgcatttcactgaggagttagaggagttttgggcc
tataaagctctcctcgccgagcttacccgcagactgacatactgcgtacaggctgatctc
attccactgatggaggtcgctggagtcatggagttccgagccaaacagctgtacaatgcc
ggatataaaacgctggctcatttggccaatgctgacccgaatgtgctggtgaaaaccgtg
gagaaactttataagagacaggctaatcagattgtggcctctgcaaaaatgctgttacat
gagaaagcagaagctctacaggaggaggttgatgagctgcttggcttccctgttgatctt
ccatctgtctaa

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