Clarias gariepinus (North African catfish): 128508198
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Entry
128508198 CDS
T10780
Symbol
patl1
Name
(RefSeq) protein PAT1 homolog 1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
128508198 (patl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgar03019
]
128508198 (patl1)
Messenger RNA biogenesis [BR:
cgar03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
128508198 (patl1)
mRNA degradation factors
5'-3' decay
Decapping complex
128508198 (patl1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
128508198
NCBI-ProteinID:
XP_053335393
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All DBs
Position
20:27875012..27884328
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AA seq
777 aa
AA seq
DB search
MFRFQSFDDDCTLEEEEEGLVGEEEEIDQFNDDTFGAGAIDDDWQEEHARLAELDERDGL
LGGGGEASSLPVVPPPSESVPLPSSLPPPPASSLSPLGSEDRTGGDLAESLAHLILDADP
AIAEVGAAELDRSRLPPSALPSQGLPPGLSAVSRSLLSYQQQQHLLHRGTVPLQQVNSHS
IWENNMGFGPVSVTHGLVTHIEESPLLSMMKELPKRTPPISREEGLDLSERVPPPRASSP
VIGSPPVRAIPIGTPPKQPMSHALNQQLHHPTAVHVRAPVPHRYPPPFPERLSPNTLLNI
ANSPLCRPPFPGGVAPVLSQIQRAQLLNSQVGPFPRGPGPAPSIMPGAAGFRPFFGQPPP
RVGPHGPHGPHPNHAPPTGHAPIRHNTTHLHPQHRRMLTQRMQSRGGGARVGGDRRIRDP
YSNLMTPKEKDWVARIQMMQLQSTDPYLDDYYYQNYYEKMEKRPERDRDSSRKEHATKLI
TPQVAKLEHTYRPVQFAGSLGKLTVSSVNNPRKMIDAVVTSRSDDEEKREKQVWNKRRQI
LYTVEKMYTLLLEVQDFEKKFLQTPEEEREALLEQHKTNTLQLYNSLREKEWDERVSDEQ
CLMIMSVRKGKRLIARLLPFLSSSQAANVVMGIARNLPALAKKDKQDQVLCCLVEPVAGV
IQSMSSSALTDLLQELQGGDGHFPRVLQNKFGVTLLYLILSEGERMQSSDPHCQLMDDNR
WTELVFSVTRELLQVPSSSLSPPLFTPPNLLSLFSRYVDRQRLEQLQEKLQITALSR
NT seq
2334 nt
NT seq
+upstream
nt +downstream
nt
atgttccgttttcagtcttttgatgatgactgcaccctggaggaggaggaggagggtctg
gtaggggaggaagaggagatcgaccagtttaacgatgacacgtttggagccggagccatc
gatgatgactggcaggaggagcatgcgcggctggcggagctggatgaaagagacgggctg
ctgggaggaggtggtgaagcgtcctccctccccgtcgtcccccctccgtccgagagcgtc
cctcttccctcctctctcccccctcctcccgcctcctccctctcaccgctcggctcggag
gacaggaccgggggcgacctggccgagtctctggctcacctcatccttgacgccgatccc
gccatcgcggaggtgggcgcggccgagctggacaggtcccgcctcccgccttcggctctg
cccagtcagggtttgcccccgggtttaagtgccgtgtctcgctcgctgctaagctaccag
caacaacagcatctcctgcacagaggaacagttccactgcagcaggtgaactctcacagt
atttgggagaacaacatgggcttcggtcctgttagtgttacacatggactggtcacacac
atcgaggagtctccgctgctgtccatgatgaaagagcttccgaagcggactcctccaatc
agccgggaggaggggctggatttgtctgaaagagtcccgcccccacgagcctcctcgccc
gtgatcgggagtccacccgttagagcgatacccataggaactccgcccaaacagcctatg
agccacgccctgaatcagcagctccatcatcccactgcggtccatgtgagggctccagtc
ccacaccgttaccctcctcccttccctgagcgcctctcgcccaacaccctgctcaacatc
gctaactctccactgtgtcgtcctccgttcccgggcggagtcgctcctgtcctgtctcag
atacagcgagcgcagctgctcaactctcaggtgggtccgttcccccgaggtccgggtcct
gctccttccatcatgcccggtgccgcaggtttcaggcccttcttcggacagccgcctcct
cgagtcggccctcacggcccccacggcccgcatcctaatcacgccccgcccactggccac
gcccctatccgccacaacaccactcacctccacccacagcaccgcaggatgctcacacag
aggatgcagagcagaggtggtggagcgagagtgggcggagaccggaggatcagggacccc
tacagtaacctgatgacccccaaggagaaggactgggtggctcgtatacagatgatgcag
ctgcagagcactgatccttatctggacgactactactaccagaattattatgaaaagatg
gagaagcgtccggagcgagaccgagacagtagcaggaaggagcacgccaccaaactcatc
actcctcaggtggccaaactcgagcacacctaccgcccagtgcaatttgctgggtctctg
ggtaaactcaccgtgtccagtgtgaacaatcccaggaagatgatcgatgccgtggtgacg
agtcgctccgatgatgaagagaagagagagaaacaggtgtggaataagagaagacagatc
ctctacactgtggagaagatgtacacgctgctgctggaggtacaagacttcgagaagaaa
ttcctccaaactccagaggaggagagagaagctctgctggagcagcacaaaaccaacacg
ctgcagctctacaactcgctgagggagaaggagtgggacgagcgagtgagcgacgagcag
tgtctaatgatcatgtcggtgcgtaaagggaaacgcctcatcgctaggctcctccccttt
ctgtcttcatcccaagctgctaatgtcgtcatgggaatcgcccgcaatcttcccgctctg
gccaagaaggacaagcaggaccaggtgctgtgctgtttagtggagccggttgcaggtgtg
atccagtccatgtcgagttcggccctcactgatctgctgcaggagctgcaggggggcgac
ggacacttcccccgcgtgctgcagaataaatttggtgtgacgctgctgtacctgatcctg
agtgagggagagaggatgcagagctccgatccacactgtcagctcatggacgataatcgc
tggacggagctggtgttctcggtgaccagggagctgttacaggttccctcctcctccctc
tcccctcccctcttcaccccccccaacctcctctcgctcttctcacgctacgtcgaccgg
cagaggctcgagcagctgcaggagaaactacagatcactgccttgtccaggtag
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