Clarias gariepinus (North African catfish): 128508199
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Entry
128508199 CDS
T10780
Symbol
pcdh7a
Name
(RefSeq) protocadherin-7
KO
K16498
protocadherin delta 1
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
128508199 (pcdh7a)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cgar01009
]
128508199 (pcdh7a)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cgar04515
]
128508199 (pcdh7a)
Protein phosphatases and associated proteins [BR:
cgar01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
128508199 (pcdh7a)
Cell adhesion molecules [BR:
cgar04515
]
Cadherins
Protocadherins
128508199 (pcdh7a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Cadherin_CELSR2_9th
Motif
Other DBs
NCBI-GeneID:
128508199
NCBI-ProteinID:
XP_053335394
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All DBs
Position
20:complement(1114884..1145825)
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AA seq
1321 aa
AA seq
DB search
MGSTSVGAVSTPLCCYLVLMLQLLTQVDSALRYRVAEEGPTDVRIGNVASDLGLVPSGIG
TGDVTFALESGAEYFKIDNVTGELTTSTRRIDREKLPQCAMIFDENECFLDFEVSVIGPL
QSWVDLFEGRVVVTDINDNTPSFPSPMLTLSVEENRPIGTLYLLPTATDRDFGRNGIDRY
ELVHQDAVSGSRRPNPSMATGTERNGGGERRRVQETGSTPNGRSNSVFELQVADTPDGQK
QPQLIVKGPLDREARDSYELILRVRDGGNPPRSSQALLRISITDVNDNNPRFERPVYEAE
MAENTPPGTPVLQVRASDRDVGVNGQVEYVFGAATESVRRLLRLDEASGWLSVLHRIDRE
EVSQLRFVVTAKDRGQPPRTDRATVILNVRDENDNVPVIDIRKIGRILVRDGAAMVPENV
LVDTPVALVQVSDRDQGENGAVTCTVVGDVPFTLKPAGENALAPPPAVDDAFERNKKKFF
LHTSALLDYETTRDYTVTIVAVDSGSPSLSVNSTLMVRVVDINDHAPTFPQNLMEVHFAE
NNTPGERVVTVVASDADSGKNAEIAYSLDPSVNGAFYIDTDNGDIRATGELDREQRDRYE
FRVIARDKGTPSLQGSTTVVVQITDRNDNAPKFVQEVFTFYVKENLLSNSPVGMLTVTDA
DDGENAELSLFVEEDNDEEEENETGSRKQETVTKTFSIENNTGTIFSALSFDRERRSTYK
FRVRAIDGGDPPRSATATVSLYVTDENDNAPSIITPLNDSYTLLTPSSGARTVVRTVTAS
DSDAGSNSDLRYALIGGNPFHLFEIGASSGVITLTEPLERRHRGLHRLVVRVNDSGVPSL
CATALVHVFVNESLTNATLVDAQVARSLGVPLSLDIAGDPDNERILGKQRLSVAIGVLSG
AAAVVLIILLVLTARQCGALGKNGYEAGKKEPEEDFFTPRPPSQPPPEKKKRRDAEKRDI
RSKSERSLYAGIVTVNSCRRTDEEEEEEEEVEEEQEVSQRIGARRHRSSPDLARHYKSSS
PLPAVHLQPNSPPVEGKKHQAVQDLPPTNTFTGNGNGNADAMSLGSDHCSDYSCHNTKYS
KQPLRRVTFSVATDAGCYDSGVDESETPSSKSSKIGVLSLPEDGYERTTPEGSVGEEEHV
ENDSRQLPDVALTGKCTRDCGEYGHSDTCWMPVQSSPRRLQGNGAPRQRMSSFTSAGDDN
NNHDNSDREEEEGEEDDGSDQGSGGGGADDTRSPLANGDPLASRRHGDRNRNIGDHNRNL
LNRKMTSASYDTFSSAKFGGQCHGDDSEVPCPNEVIPLTRSGGGDFKTTSCLTLSRREVY
L
NT seq
3966 nt
NT seq
+upstream
nt +downstream
nt
atggggagtacgagcgttggcgcagtgagcacgccgctctgctgctacctcgtgctcatg
ctgcagctgctgactcaggtcgattcagcgctgcgctaccgggtggccgaggaaggtccg
acagatgtgcgtatcggaaacgtggcaagtgacctggggctcgtgccatccgggatcggc
actggcgacgtgactttcgccctggaatctggagcggagtacttcaagatagacaatgtg
acgggcgagctgaccaccagcacccggcgcatagaccgcgagaagttaccccagtgcgcc
atgatcttcgacgagaacgagtgcttcctagactttgaagtttccgtgatcgggccgctc
caaagctgggtggatcttttcgaaggccgcgtcgtcgtgaccgacattaacgataacacc
ccgtcgttcccgtctccgatgcttactctgtcggtcgaggaaaacaggccgatcggaacg
ctgtaccttctccccacggctacggatcgtgacttcggacgcaacggaatcgaccgctat
gagcttgtgcaccaggatgccgtttccgggtcacgccgacctaatcccagcatggccacg
ggaaccgaaaggaatggcggtggtgagaggaggcgtgtccaggagaccgggtcaacccca
aatgggcggagcaacagtgtatttgaattgcaagttgccgatacacctgacggacagaaa
cagccacagttgattgtaaaaggcccgttagaccgagaggcacgcgattcctatgagctc
attctccgagtacgagacggcggaaatccgccacgttcctcccaagcgctgcttcgtatt
tccatcactgatgtcaacgacaacaatcctcgctttgaaagacctgtttatgaagctgaa
atggctgaaaacacacctccaggaacacctgtgctccaggtgcgagcgtcagatcgtgat
gttggagtaaacgggcaggtggaatatgtttttggtgccgcaacagaatctgtacgccgg
ttattgcgcctcgacgaggcctcaggctggctcagtgttttacaccgtattgaccgagag
gaagtttcccaactccgctttgtagtaactgcaaaagatcgaggacaaccgcctcgaacg
gaccgcgccacagtcatactcaatgtccgagatgaaaacgacaacgttcctgttatagat
atccgcaaaatcgggcgcattcttgtgcgagacggagctgctatggtccctgagaacgtt
ctagtggacactcctgtagctttggtccaagtttctgatcgtgatcaaggagaaaacggc
gctgtgacatgcacagtggtgggagatgtcccatttacgctaaaacccgcaggagaaaat
gcactagctcctcctccagctgttgatgatgcctttgaacgaaacaaaaaaaagtttttc
ctgcacacatcagcgcttttggactatgaaaccacaagggattacacggtcacgattgtt
gcagtggattcaggaagcccaagtttgtctgttaacagcacattaatggtgcgagtggtg
gatataaacgatcacgctccgacgttccctcaaaatctgatggaagttcatttcgctgaa
aacaacacaccaggggagcgggtggtcaccgtggtagcgtctgatgccgatagcggcaaa
aatgcagaaatcgcatattccctggatccatctgtgaatggtgcattttacatagacaca
gataatggagatatacgtgccacgggagagttagatcgagaacaacgtgacagatatgag
ttccgtgtaatcgcgcgggacaagggcactccatctttacagggttccacaaccgtagtt
gtccagataacagatagaaatgacaacgctccaaagttcgtccaggaagttttcacattt
tacgtgaaagagaacttgctttccaacagccctgtcggtatgttgactgttacggacgca
gacgacggagagaatgcggagttgagtttgtttgtggaggaggacaatgatgaggaagag
gaaaacgaaacaggaagtagaaagcaggaaaccgtaaccaagaccttttccatagagaac
aacaccggaaccatattttctgcactgtcatttgaccgcgagcgtcgcagcacatataaa
tttcgtgtccgggccatagacggaggcgacccgcctcgatccgcaactgccacagtttct
ctgtacgtaacagacgaaaatgacaacgctccatccatcatcactcccttgaacgactcg
tacacactcctaactccatcaagcggcgcccggactgtcgtgagaaccgtaacggcctcg
gacagtgacgccgggtccaactcagacctgcgctatgctctgattggtggaaacccgttt
catctgttcgagatcggcgcaagcagcggggtcatcacgctgacggaaccactggagagg
cgacaccgaggacttcaccgtctggtggtacgagttaacgacagcggagttccatcactg
tgcgccacggcgcttgttcatgtcttcgtcaatgagagtctcactaacgccaccctggtg
gacgctcaggtggctcgcagtttgggtgtccccctgtccctggacattgcaggtgaccct
gataatgagaggattctgggtaagcagcgtctcagcgtggcgatcggtgtgctgtccggc
gcggccgctgtggttctcatcatcctcctggttctgacggcgcgtcagtgcggtgcgctt
gggaaaaacggctatgaggccggaaagaaagaacccgaggaggacttcttcacgccccgc
ccaccctcacagccacctcccgagaaaaaaaaacggcgcgatgcagagaaacgtgacatt
cggtcaaaatctgagcgctcgctgtacgccgggatcgtcacagtgaacagctgcagacgc
accgacgaggaagaagaggaggaagaggaagtagaggaggaacaggaagtgagtcagcgc
atcggggcgaggcgtcaccgctccagtcctgacctggcacgtcattacaagtccagctcc
ccgttacctgctgtccacctgcagcccaactcgccgccggtggaggggaagaagcaccag
gccgtgcaggaccttcctcccacaaacaccttcacagggaatgggaacgggaacgccgac
gccatgtcactcggctccgaccactgctccgactacagctgccacaacaccaagtacagc
aaacagccgttgcgcagggtgacgttctccgtggcgacagatgctggttgctatgacagc
ggggtggacgagtcagagacaccgagcagtaagagcagtaagatcggcgttctgtctctt
cctgaagatggatatgagagaacgacacctgagggcagtgtgggagaggaagagcatgtg
gagaatgactcaaggcagcttccagatgtagctttaacaggaaaatgcacccgtgattgt
ggcgagtatggccactctgacacctgctggatgcctgtgcagtcgtcgccacggagactc
caaggcaatggagcaccacggcaacgcatgtccagcttcacttcagcaggcgatgacaac
aacaatcacgacaacagcgatcgagaggaagaggaaggagaggaggacgacggttcggac
caaggcagcggagggggcggagccgatgacacgcgcagtcctctggccaatggtgatcca
cttgcaagccgtcgccatggtgaccgtaacagaaacattggggatcacaaccggaacctg
ctgaaccgcaaaatgacatcagcatcatatgacacctttagcagcgctaagttcggaggt
caatgccatggtgacgattcagaggtgccctgcccaaatgaggttattcccctgacccgg
tcagggggtggagacttcaaaacaacatcatgcctgacattatcacgcagggaagtttac
ctgtga
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