Clarias gariepinus (North African catfish): 128508214
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Entry
128508214 CDS
T10780
Symbol
dchs2
Name
(RefSeq) protocadherin-23
KO
K16507
protocadherin-16/23
Organism
cgar Clarias gariepinus (North African catfish)
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cgar04515
]
128508214 (dchs2)
Cell adhesion molecules [BR:
cgar04515
]
Cadherins
Cadherin related
128508214 (dchs2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_CELSR2_9th
Cadherin_2
Cadherin_pro
Cadherin_4
Big_9
DUF2768
Motif
Other DBs
NCBI-GeneID:
128508214
NCBI-ProteinID:
XP_053335413
LinkDB
All DBs
Position
20:complement(22464927..22490194)
Genome browser
AA seq
3192 aa
AA seq
DB search
MDHLLRVVLQFLILLLLLCVKSWAQAYNLSVSVEEGLPAGTVVGTIRAAFPPGVRSSGFF
ISESTDSDVFRDLKVDTETGDVSTSAVLDRERTNKYEFSTRSLTGDVVRVQVEVKDVNDN
APVFPEGMVMLNVSEWTPAGTRFHLNAAGDGDEGRFGVQGYRILESEETEGVFKLDVEGM
DLVLVKELDREDVDFYYLTVEAFDGGVPPKSGFLQVNVNVLDENDNHPVFNQTDYLAFIW
ENAAFLTPVFQVNARDPDFDVNGSVSYEIDPILSNSDEHFIIDTNTGIIRVNKILDYETR
SSFELVVTAQDHGSPPKSSSTSVEIRILDVNDNSPNISVVFLSESGDPEVSEGAGYGDYV
AQITISDPDLGEPDKVGVSLQGGDGKFSLKLVDEFVYVLCVDGVLDRDERDRYKLSVVAS
DFGSPPLRSEKSFVLRITDVNDNAPLFEQEIYHTNVFEDVPEGSSVIQVKAHDDDENSGI
LYSILQSDQSFLVNIDPLTGIVSTAAGLDRERESDLVFLVVAVDSGFPPLTSTATVSICV
EDVNDNGPVFQQQIYNATIREHLAIGSCFFQVIAEDADGDELGTVRYDFSEVFNTEYTRN
LFHINPITGEMCVSHDIDRDAGLVYFDLLIKAEDQGGLSSQAYLHIDVEDVNDNAPVFNP
EQYSTNLSLTIEPGAEILTVFATDRDFDNYGRVSYELLPGDHASFFSVNESSGTLSVSST
LSELGTSRVRLSVSAHDGVGVASPRPADIIINILHADHAPALFQKSHYSFSVSEDSSPGT
SVGTVRVVKSHDFMDAHVYQIASGDPEKFFTLDSQSGVIYTNIPLDHESLPSALLTVQAH
TDTPFFYSTAYVHIIITDINDNPPVFPITFDLITISLKALPGTTLYVAHAHDSDSAANGQ
IRYSVHPESQLFNIHPHFGTLTLNSSIPKGSPQRYELNVVADDGGNPSLSSSMSLTVEID
SSTNPKNVIAFETLIYQVEIGENAQSGTGVIQVRAHWIKSQPGSHLPRILSYSMEPQFPT
LPFLIQPDSGWIFVAGGLDYESEKMYRFNIRAEAHGSDEELSASATAIISIQDENDNIPV
FSRDRYFFSVPESLDPHGLMGKLNATDRDSGKNAQLSFILLSDTKHFRINSKTGELMNWA
ALDREHQPHYTLRVMVTDHGHPRLNSTTTVHITVTDVNDNPPQFTHQQLSVQVCANLPVR
SVIMSVFAKDPDAGENGTVAFSLREEGGKSHFEIDSQSGEIKVTARFEQNHQTNYTMAVV
ARDNGVAPVEQTALVHIQVHACTQVRGPTAGSGDVLGFRRLTVTEDASVGSLIGSIGISR
GASQLLRYNDEDGSLYFTTDAANGNIYLAKPLDYETNQQHCFKMYPSVNTTFLVAVSIDD
VNDNTPSFPGNSSIVAFGVEEDVTIGTMVYVFKAVDGDATFRNSAIRYTMTFDPTMAMEN
IPFRIDPDTGEIVTTLLLDRERNQSFAFIVTATDGKHAEALTAQVFLLDINDNNPAFVSN
DTVHVAEDTKVGSLLHHFLARDEDEGVNSQVSFSLISGNEGEVFRLKRSGHLYLNSSLDY
ESQHAFGLTVQVSDGGTPSLSSTQTLTVLLIDVNDEMPLFDQDRYRASVMENREPGEAVV
TVRALDLDSGQNGNLSYSLLPGAGYEFFTIDSRTGLISTSRKLDRELQHSFTLRVQAEDA
GIPALSSTTTVLCSVLDDNDNPPQFSQTSFHIVIPENLPPGVIHTAVTFDPDNGLNGTVT
YSIENTFGDFFIDSETGAVSTASSLDREKRSNYTLIIKAADQSSTPLTSTAILFINLADE
NDNNPTFEQTTYHAIVSEDLPLGSEILRLHARDPDEGPNAEISFSLIEEVSGTFSVNAST
GAVRLAKPLDREIKSQYNLRAVATDGCSQGPRSSVVAISVQVDDVNDNVPHCINDPIRAS
VSAGNNRTVAMVTAHDPDQGENGTVVFRLMQEDEQFHINQSTGEVQIKSSITASIAETKM
LKIWAVDKGSPALTSTCLVIITLNGDEPLLQFTEKHYEVSLPENSETGSWVGNVVAHDQS
ATEITVKYGIFSGNENGAFSIDSNTGDITVRNKLLLDFEREREVHLVVSATNSRHSAHAR
VTVSLQDVNDNAPVFKQSYYRTAVWEGQIVNTYVTQVLAMDADGGVNGQIDYSIVNGNQN
NTFIIDSVRGILATRAVLDREIIFSYKLTVEAKDRGNPALTGTCIVQVQVVDVNDNRPVI
PAIDPIVVPENFPPGHIVIQVRANDVDLGSSITYSLAQPVEANGSFAVDPYLGIITSIKS
LDYEEQILHTLTIMASDSEHKTEAQITVEVLDVNDNAPVFSQEYYQVMLPELTPADTFVV
AVSATDRDSSLNGKISYRLLSSTKGGFYINNENGSIYTNKPLKYATGNNVIRLLVEARDA
GDPSLSSVTSVDIEVLDYNDHAPFFQNNTYHVGVCEDTSVGSVLLTLLAHDHDYSEENTH
LDYIITGGNEERRFCIEASTVPTELQRSTVGYLVLCDTLDRETTGTYSLTVTVMDRGVPR
LNSSTIVSIIVLDINDNEPVFSSLEYYVQVSENNQLSSFLVLVSAQDPDLGPNGTIRYDI
ISGNSKGLFRLNYQTGALEANGTLDYEDETKHILTVQASDGGGLDNKKVSFTVIFITILD
ENDHLPFFRFPTINCSVAENLPAFTPVCVVHAIDQDAGIFGLLTYSILTSCFIDYSSENQ
DMSEAFTIDPLTGEIHTRQIFDYERTSEYCFVVEAIDKGDHGTTVKVQVDVEGVDEFSPM
FTQKLYYFTLPDNALVGQSIGHVTAMDYDRGLDGIVEYNLAKPSHFFNVNKNTGSIYITN
PVYQRKGYMATSEAVEEFLILASSPKLDSRSTACRVVVNISNSPEALTSIAVRVHTVSLS
VSLAVFLLLFISIIAIILRYKTKNNKLKKTVVLAANIKDGPITYTGTHGPSQDMRERSTS
WKNSGSSPRGSAEGETAEEVMIVNEYQCLKQPDKVMADQKLGIPLDSDQISCNSADMCLG
KRQLVGMPSVESLHNFKEEGGGEGMLPHMVNMMEMDEVIRSCLSLSEQQNIIQGSPSNFT
STEKHLNWDHNRDNPSYWKPYFQFQPTIFTNKSMVSEKEHREGDINMELYSLLSPSSRPS
LNAVSSKLPQRMESFGKMLSKPTYKYSCLAEKTGLNNFVMTSDLSPSSSLLTLRTTSASP
VVSETGLDSFNK
NT seq
9579 nt
NT seq
+upstream
nt +downstream
nt
atggatcatttattaagggttgtattgcaatttctcattcttttactgctactgtgtgtg
aagtcgtgggctcaggcgtataacctcagtgtgtctgttgaggaaggtttacctgcaggg
accgtagtagggaccattagagcggcttttcctccaggtgtacgaagcagtgggttcttc
atatccgagagcacagactcggacgtcttccgtgacctgaaagtagatacggagacggga
gacgtgtccacgtctgcagtcctggaccgggagcgcacaaacaaatacgaattttccact
agaagtttaacaggagacgtggtaagggttcaagtggaagtgaaagacgtgaacgataac
gcccccgtgtttcctgaagggatggtgatgctaaacgtgtccgaatggactccagctggg
acaagatttcacctgaatgccgcaggagatggagatgaaggcaggtttggcgttcaaggg
tacagaattttggaaagtgaggaaacagagggggtttttaaactggacgtagaggggatg
gatttggttcttgtgaaagagctggatagagaggacgtggacttctactatctaaccgtt
gaggcttttgatggtggcgtaccaccaaaatccgggttcttacaagttaacgttaatgtt
ctggatgaaaacgacaaccatccagtttttaatcagactgactatctagcgtttatttgg
gaaaacgccgctttcctaacccctgtgttccaggtaaatgctcgtgatccagattttgac
gttaatggctccgtcagctatgagatcgacccaatccttagcaactcagatgaacatttt
atcattgacacaaacacaggtatcattcgggtgaataagattttagattacgaaaccagg
tcgtctttcgaactggtcgtgaccgctcaggatcatggatctcctccgaaatcgagcagc
acatcggtcgaaatcaggattctggatgtcaatgataacagcccgaatattagcgtcgtg
tttttgagcgaaagtggagatcctgaggtttctgaaggagctggttatggagattacgtg
gcccagattaccatttcagacccagacttgggagaaccggacaaagtcggtgtatccctt
caaggtggcgatgggaaattcagcttaaagcttgtagacgagtttgtgtacgtcttatgc
gtggatggcgtgcttgacagggatgaaagggatcgatacaagctcagtgtggtcgcctca
gactttggttctcctccactgagaagcgagaagtcgtttgttctacggattaccgacgtg
aacgataacgcaccacttttcgagcaggagatctaccatacgaacgtttttgaggacgtt
cctgaaggaagctcggttatacaggtcaaggcccacgatgacgacgagaactctgggata
ttatactcgatcttacagtcggatcaaagcttcctggtgaatatcgaccccctgaccggt
atcgtcagcaccgccgcgggtttggatcgagagcgagagtcggacctggtgtttttggtg
gtggcagtggactctggttttcctcctttaacctccacggctactgttagcatctgcgtc
gaggacgtcaatgataatggacctgtcttccaacagcagatctacaacgccaccatacga
gagcatctcgccatcggaagctgcttcttccaggtaattgccgaagacgctgatggagac
gagctcggtacggtgcgttatgatttttccgaggtgtttaacaccgaatacacacgcaat
ctgtttcacatcaaccccattactggagagatgtgtgtgtctcatgacatcgatcgtgat
gcaggcctggtgtactttgaccttttaataaaagctgaggaccaaggaggcctcagctca
caggcgtatcttcacatcgatgtggaggatgtgaatgataatgctcctgtatttaaccca
gagcaatattccacaaacttaagtctaactattgaaccaggagctgaaatcctgactgtt
tttgccactgaccgagatttcgacaactacggacgagtctcatacgagcttctccctgga
gatcatgcgtcttttttctctgtgaatgaatcgtcaggcacactctctgtgtcctcgact
ctctccgagctgggcaccagcagagtgcgactctcggtctccgcccatgatggagtaggc
gtggcctctccaagacctgctgacatcatcattaacattctgcatgctgaccacgcccct
gcgctcttccaaaagtcccattatagcttctcagtgtctgaggattcttctcctggcacc
tcggtgggaacagtgcgggttgtaaaatctcacgatttcatggatgctcacgtgtatcaa
atcgcctctggtgaccccgagaaatttttcactctggattcccagtctggtgtgatttac
accaacattcctctggatcatgaatccctaccaagtgcacttctcactgttcaggctcac
actgatactccattcttttacagcactgcttatgtccacataatcatcactgacatcaac
gacaatccacccgtctttccaatcacctttgacctcatcacgatatccctaaaagctctt
cctgggacaacgctctacgtggcgcatgctcatgacagcgatagcgctgctaacggacag
attcgctactctgtccatccagagagccagttattcaatatccatcctcattttggaacc
ctaacgctaaacagcagtattccaaaaggttctccacagagatatgagctcaacgtggtg
gctgacgatggagggaatccatccttaagctcctcgatgagccttacagttgaaattgac
tcttcaacaaacccaaagaacgtgatcgccttcgagactctaatctatcaagtggagatc
ggggaaaatgctcaaagtggcactggtgtgatccaagtgcgtgcccattggatcaaatca
caacctggatcacatttacccagaatcctcagctactccatggagcctcaattcccaaca
ctgccgttccttattcagcctgatagtggatggatctttgtcgctggcggtcttgattat
gagtcagagaagatgtacagatttaacattcgtgccgaagctcatggcagtgacgaggaa
ctgagcgcttcagccactgctatcatctcgatacaggatgaaaatgacaacattccagtt
ttcagtagagaccgatactttttcagcgtcccagagagtctggacccgcatggcctgatg
ggaaagttgaacgctacagatagggactctgggaaaaacgcacagctctcctttatcctg
ctgtccgacaccaaacacttccgcatcaactctaaaacaggagagctgatgaactgggcg
gctctggatcgcgagcatcaacctcattacactctgagagtaatggtgactgatcacggt
catcctcgcctcaactccaccacaaccgtccacataactgtgactgatgtcaatgacaat
ccacctcagttcacacaccagcagctcagtgtgcaggtatgtgccaaccttcctgtccgt
tcagtgataatgagcgtctttgctaaagacccagatgctggagaaaatgggacagtcgca
ttctctctaagagaagagggtggaaagagtcacttcgagattgacagtcaaagtggagag
atcaaggttacagcaagatttgagcaaaaccaccagacgaattacaccatggcggtggtt
gccagagacaatggcgttgcccctgtggagcagacagccttggtacacatacaggtccat
gcttgcacccaggtgcgaggacctacagcgggcagtggtgatgttctgggtttccgaagg
ttaactgtcacagaggatgccagcgtgggctctctgattggctcgattggaatttccagg
ggagccagccagctgttgcgctataatgatgaagatgggagtttatacttcactaccgat
gcagcaaatggcaatatttatctagccaagcctttagattatgagacaaatcagcagcac
tgtttcaaaatgtatcccagtgttaacaccacttttctagtggctgtcagcatcgatgac
gttaatgacaacacgcccagtttccctggaaacagcagcattgtggcgtttggagttgag
gaagatgtcaccataggaaccatggtttatgtctttaaggcagttgatggcgatgcgacc
tttcgtaacagtgctatccgttacacaatgacctttgacccaaccatggctatggaaaac
ataccgtttagaattgatcctgatactggggaaatcgtaacaactttattgttggatcgt
gagcgtaatcaaagttttgccttcattgtcactgccaccgatgggaaacacgccgaggcg
ttgacagctcaagtgtttctactggacatcaatgacaacaacccagcatttgtttcaaat
gacacggttcatgtggcagaggacacaaaggttggaagtcttttacatcatttcctggcc
agagatgaagatgaaggcgtgaacagtcaggtgtccttcagtctgatctctggaaatgaa
ggtgaagtgtttcgtttgaagagatcaggtcacctgtatttgaactcctctttggactat
gagtcccagcatgcctttggactcacggtgcaggtctcagatggggggacaccatcccta
tcctccactcagaccctgaccgtgctgctgatagacgtgaatgacgagatgccgctgttt
gaccaggaccgttaccgagccagcgtgatggagaacagagagccaggagaagcagtggtt
acagtgagagcactggacctggactcaggtcagaatggtaatttgagctacagcctcttg
ccaggtgctggttatgagtttttcaccatcgactcacggactggtcttatcagcacctcc
aggaagctggacagggaactgcagcacagcttcactctcagagttcaggcagaggatgct
gggattcctgctctctccagcacaactacagttctttgctcggttctcgacgacaacgat
aatcctcctcaattctcccagacatccttccacatcgttataccagagaatctccctcca
ggagtcattcacactgctgtgacctttgaccctgacaacggactcaacggaactgtgacc
tattctatagagaatacttttggagacttctttatcgactcagagactggagctgtcagc
actgcaagctctctagatcgagagaaacgttcaaattacacactcatcattaaggctgct
gatcagagttctactcctctcacttccactgccatcctttttataaatctcgcagatgag
aatgacaacaatcccacttttgagcaaactacctaccacgccatcgttagtgaagacctt
cctctcggcagtgagattctccgtcttcatgctcgagacccagacgagggtccaaacgct
gaaatcagcttctccctgattgaggaagtgtccgggactttttctgtcaatgcctctaca
ggagctgtgcgcttagcaaaacctttggatcgagaaattaaatcgcagtacaatctccgt
gccgtagcgacagatggctgtagtcagggtccgcgtagttctgtcgtagccatcagtgtt
caagtggatgatgttaatgataatgtgcctcactgcattaacgacccaataagagcgtcc
gttagtgcgggaaataaccgaaccgtcgccatggtgacagcacatgatccagatcaaggt
gaaaatgggacggtggtgttcaggttaatgcaggaagatgagcaatttcatattaaccaa
tcaactggagaggtgcagataaaatcctcgataacagccagcatagcggagacaaagatg
ttaaaaatctgggctgtagacaaaggctcgcctgctctcacctccacctgccttgtgata
attaccctcaacggtgatgagcctctgctgcagtttaccgagaaacactatgaagtgagc
ttgcctgaaaacagtgagacaggttcctgggtgggaaatgttgtagctcacgatcaaagt
gccacagaaattacagtgaagtacggtatattcagcggcaatgagaacggagctttcagc
atcgattctaacacaggtgacataacagttagaaataagctcttgctggactttgagagg
gagcgcgaggttcatctggtggtttcggcaacaaatagtcgccattcagcccatgccaga
gtgactgtcagtctacaggatgtaaacgacaatgctccagtgttcaaacaaagttactac
agaactgcagtctgggagggacagattgttaatacttatgttacgcaggtattagcaatg
gatgctgatggcggtgtgaatgggcaaatcgactactccatagtgaatggaaatcaaaac
aacactttcattatcgactctgtacgtgggattcttgccaccagggcagtccttgaccga
gaaatcatcttctcttacaagttgacggttgaggctaaagacagaggaaatcctgctttg
acaggaacatgcattgttcaagttcaggttgtggatgttaatgacaacagaccagtgata
ccagcaatagacccaatagtggtccctgagaattttccacctggccatattgtcatccaa
gtaagggccaatgacgtcgatcttggttcttcaatcacgtacagcttagcacaaccagtg
gaggcaaatggaagctttgctgtagacccctatttgggaataatcacatctatcaagagt
ctggattatgaggagcaaatcctacatacgctgacgataatggcatccgattcagaacat
aagacagaggcacagataactgttgaagttttggatgtaaatgataacgcacccgttttc
tctcaggagtattaccaggtaatgttgccagaactgacacctgcagatacgttcgtggtg
gctgtatcagccacagacagagactccagtttgaatggcaagatatcttacaggcttctc
tcttccaccaagggtggcttctacatcaataatgaaaatggttctatttataccaacaag
cctttgaagtatgccactggcaacaatgtcattcggcttctggtggaagctcgggatgca
ggcgatcctagtctttcttctgtcacatctgtagatattgaggtgctggactacaatgac
catgcaccttttttccagaacaacacatatcatgttggtgtgtgtgaagacacatctgtt
ggaagtgtactccttaccttgctggctcatgaccacgattattctgaggaaaatacccat
ttagactatatcattactgggggaaatgaggagagacgtttctgcattgaagccagtaca
gtgcctacagagctccagagaagtactgtggggtatttagtgctatgtgacactctggac
agagagaccacagggacttactcattgactgttactgtgatggacagaggagtacctcga
ctaaacagctcaacgatagtttcaattatagtgcttgatattaatgacaacgaaccagtc
tttagcagtttggaatactatgtgcaggtcagtgaaaacaaccagttaagttctttcctg
gtcttggtgtctgctcaagatcctgaccttggaccaaatggcaccataaggtatgacatc
atctctggtaacagtaaaggtttgttccgattgaactatcaaacaggtgctctagaagcc
aatgggacactggattatgaagatgaaacaaaacacatcttaactgtccaagcatcagat
ggtggtggtctagacaacaagaaagtgtcctttacagtgatattcataacaatacttgat
gagaatgatcatttgcctttctttaggttccccaccataaattgttctgtagcagaaaac
ctacctgcttttactccagtatgtgtggtccatgctatcgatcaggatgcagggattttt
ggcttgctgacttactccatattgacctcctgtttcatcgactatagcagtgaaaaccaa
gacatgagtgaggcctttaccattgatcctctcactggagaaattcataccagacaaata
tttgactatgagagaacaagtgaatactgttttgttgtagaagccatagacaaaggagat
catggtactacagtaaaggttcaagtagacgttgaaggtgtggatgagtttagtccaatg
tttacccagaagctgtactatttcactttgccagacaatgccctagtgggccaaagcatt
ggtcatgtaacagccatggattatgacaggggtctggatggcattgtggaatacaattta
gcaaagccatcccactttttcaatgtcaacaaaaacactggcagtatctacataacaaac
ccagtgtatcaaaggaaaggttacatggccacaagtgaagctgttgaagaattcctgatt
ctggcaagtagtccaaaacttgattccaggtcaacagcttgccgtgttgttgtgaatatt
tccaattcgccagaagctcttaccagcatagctgttcgtgtccacactgtcagccttagt
gtttcattagcagtttttctcttgctctttataagtattattgctataatattgaggtac
aaaactaaaaacaataagctaaagaagactgttgtattagctgctaatatcaaggatggg
cctataacatataccggtacccatggcccaagtcaggacatgcgagaaaggagtacctca
tggaagaactctggctcaagcccaagaggatctgcagagggtgagactgctgaagaggta
atgatagttaatgagtaccagtgtctcaagcagcctgataaagttatggctgaccaaaaa
ctggggattcctcttgactcagaccagatttcctgcaattcagctgacatgtgtttagga
aaacgccaactggtgggaatgcccagtgttgagagtcttcataattttaaagaggaagga
gggggtgaagggatgttgccacacatggtcaacatgatggagatggatgaggtcataaga
agctgcctgtctttatctgagcaacaaaatatcattcagggatctccctctaattttact
tcaacagagaagcacctgaattgggatcacaaccgggacaatccttcatattggaagcct
tatttccaattccagccaactatcttcaccaacaaaagcatggtttcagaaaaggaacat
agagaaggtgatattaacatggagctttacagccttctaagcccgtcatcccggccaagc
cttaatgccgtttcttctaagttaccacaaagaatggaatcatttggtaaaatgctctcc
aaaccgacatataaatattcatgtttggcagaaaaaacaggactcaataattttgtcatg
acctctgacctttctccttcttcatcgcttctaactctgaggacaactagtgcttctcct
gtcgtctcagaaactggactggatagctttaacaaataa
DBGET
integrated database retrieval system
