Clarias gariepinus (North African catfish): 128508372
Help
Entry
128508372 CDS
T10780
Symbol
arid2
Name
(RefSeq) AT-rich interactive domain-containing protein 2 isoform X1
KO
K11765
AT-rich interactive domain-containing protein 2
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar03082
ATP-dependent chromatin remodeling
Brite
Transcription factors [BR:
cgar03000
]
Eukaryotic type
Helix-turn-helix
ARID
128508372 (arid2)
Transcription machinery [BR:
cgar03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
128508372 (arid2)
Chromosome and associated proteins [BR:
cgar03036
]
Eukaryotic type
Chromatin remodeling factors
PBAF complex
128508372 (arid2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ARID
RFX_DNA_binding
FOXP-CC
TSTD2_N
Motif
Other DBs
NCBI-GeneID:
128508372
NCBI-ProteinID:
XP_053335644
LinkDB
All DBs
Position
2:complement(34568653..34595152)
Genome browser
AA seq
1708 aa
AA seq
DB search
MMANSTGKNVPEQRRKGLAFLDELRQFHQSRGSPFRKVPVVGGKELDLSALYVRVVSLGG
FAKVSDKNQWSELGEEFNFPRSCSNAAFVLKQYYLRYLEKYEKVHHFGEDDDEVQPGNPK
PSLPIGAIPCAYNYQQHTVSDYLRQSYGLSTDFVPPCDYNKLVLSLLSGLPNEVDFAINV
CTLMSNESKHTMQLEKEPKLVTLLLAHAGVFDDSLGSFSAVFGMDWREKTSRDFAKFWKD
IIEDNEVKDLISDKSSTSQDGTEQRVVQALLFHPHRNMGISDVEGQRVLQVAIILRNLSF
EETNVKQLAMNRTCLRFLLLCAHCTFISLRQLGLDTLANVAGELQLDPVDFRTTHLMFHT
ITKCLMSRDRFLKMRAMEIMANLSKAEDNGVLICEYVDQELYREVITLLTLPDIMLVISA
LEVLYQLTELGEITCSKISSVDRSIDLLVRLVSVDLHTFGPEALMTIKLIEHQSTNSQVA
EVRPQLVENVPPPVQGAPAAVTRVPVQNNPPPGIVEMDGEKFASQLLNAYYEVHAEGSVS
RSEMYSDYLANCSKLSRGGVLTSNGFYKCLRTIFPNHTVKRMEESKVNSQAQIHVVGVKK
RAIPLPIQLYYQQQQQSCPVPGPKHEASLDPQHHTQSALAPGVGGQFVRAPAPSLTANQA
APPVAFNMHGAPHPHSPSAPASALAAPRLPASPSVQAPPPFSLAAPAMLPRPNDILKTAM
IQSSIPTAPLAPIHSTTANHNNITPAASLPQPLLPHTPVTLIQKTLPEGHILTGRVQAAC
PPLEQQQLPASQIQQAASSKDTVVLANPSQYPSTPCTPLVAEGQAFTVAGVQSAQGPRMT
FQNIAPKPSLPAQPPLQHPLHHQPHHQQQQQQSLVIVSPNPQPNPAFAPAIHHIVLTNPT
TMQNAQTIQLSGQPATSPQPASSPGQLSSCPSPQMLSSPSNPVQSPPPTVSQMLSVKRQQ
QIQIHTSPPPPPPPPPPPPPPPPPTPPMAPPMAPAQTTSTESSLIKQLLLPKRGPTTPGG
KLILPAPQVPPPASTRAPSPQVVYQVTSSSQGTPQAPQLNVQLMQSSLQGAGAVQTVPIS
ILPGQILSTSNPATILQATPSNQVTFTVVPNSSFPNAAVSSQGTPSPLVSQTGLNMNTSP
PTLGFQLTPHIPPPVSTCTTPVPPFRGDKIICQKEEEAKDATGLHIHERKIEVMENSLVT
EVSTKASNGQPMVVDGPGAKLLNGRKSDSSLPPYHSGNSQPEALQGTQALNGPTLQGNDG
TAKQMSGGSLSESRKPLVNGVCDFEKGEATTGTHTSKNIPNHKASKHMGNGDVLLPQKVH
ETFTDSLSPQQATAKAEQLERLANGPKSFGHSAEISNGPSAQNMDTTGFRQQHPPHNHIS
AATPTSQNSSGADQATNGTSESRPLKRPAEDASGIPNKVGVRIVTISDPNNAGNSATMVA
VPAGVDPSTVAKVAIENVAQQRPSVPATLPETTTRQPVLAQSPPPAVQTAQGVSQSSVPP
GDGPLSSDQTRKPGQNFKCLWQACKRWFETPSQVFYHAATQHGNKEVYPGQCLWEGCEPF
TRQRLSFITHLQDKHCSREALLAALKLEETQGSNSNPSKSPPPASSSSAPTRPQKAIVNH
PSAALMALRRGSRNLVFRDFTDDKEGPLTKHIRLTAALTLKNIAKYSDCGQTLVKRHENH
LSVLALSNMEVSTTLAKCLYELTHTLQA
NT seq
5127 nt
NT seq
+upstream
nt +downstream
nt
atgatggcaaattcgacggggaaaaatgtacccgagcagcggaggaaaggactagctttc
ctggacgagctgcggcaatttcaccaaagcagaggatcgccgtttaggaaggtcccggtg
gtcgggggaaaggagctggacctgagcgctctgtatgtcagagtcgtgtctttaggcggc
ttcgcgaaggtgtcggataaaaaccagtggtcggaacttggagaagagtttaatttcccc
aggagttgctcgaacgctgcttttgttctgaagcagtactacctgcgctatttagagaag
tatgagaaggtccatcactttggagaagatgatgacgaggtgcaacccggaaaccctaaa
ccgtcgcttccgatcggggcaataccgtgcgcctacaactatcagcaacacactgtatca
gactatctccgccaaagctacgggctgtcgacggatttcgtccctccatgcgactacaac
aaattggtgctgtccctgctgtcggggcttcctaatgaggtggactttgccatcaacgtg
tgtacgctgatgtccaacgagagcaagcacaccatgcagctagagaaggagcccaaactc
gtcacactgctgctggcacacgccggagtctttgacgactcattaggtagcttttctgct
gtattcggcatggactggagggagaagacgtcccgagactttgccaagttttggaaagat
attattgaagacaatgaagtaaaagatctcatctcagacaagagcagcacatcacaagat
ggcacggagcagagagtcgtgcaggctctgctgtttcaccctcacagaaacatgggcatc
tctgatgtggaggggcagcgcgtcctgcaagtcgccatcatccttaggaacctgtccttc
gaggagaccaacgtcaagcagctggcgatgaaccgcacatgtctgcgtttcctcctcctc
tgtgcacactgcactttcatctcgctgcggcagctgggcctcgacactctggccaacgta
gcaggcgagcttcagctggatccagtggactttcgaacaacacacctaatgttccacaca
attaccaaatgtctgatgtcaagggaccgctttttaaaaatgagggccatggagatcatg
gccaacctaagtaaagcggaggataacggtgttctgatctgcgaatatgtggaccaggag
ttgtaccgggaggtgatcaccctgcttaccctgccggacattatgcttgttatctctgcc
ctggaggtgctttatcaattgacagaactcggagaaatcacttgttccaaaatctcctct
gtcgacaggagtatagatctgctggtacgtctagtgtcggttgatttgcacacgtttgga
cctgaagctctaatgaccattaaactgattgagcaccagagcacaaacagccaggtggca
gaggtacggccgcagctcgttgagaacgtacctcctcctgtgcaaggtgcacctgcagcg
gtgacaagagttcctgtccagaataacccgccacctggcattgtagagatggatggagaa
aagtttgcttctcaattgctaaatgcttattacgaggtgcatgcagaaggctctgtttct
cgatctgagatgtactccgactacctggcaaactgcagcaagctgtcacgtggtggtgtt
cttacatccaatggtttctacaaatgtttaaggaccatatttcctaaccacacggtaaaa
cgcatggaagagtctaaagtaaactctcaggctcagatccatgtagttggtgtaaagaag
agggcaattcctctgcccattcaactgtattaccagcagcagcagcagtcctgccctgta
ccagggcccaaacatgaagcctccttagaccctcagcatcacacccaatcagcgttggcg
cctggtgtgggtgggcagtttgttcgggcaccagcaccaagccttactgccaaccaggca
gcaccaccggttgccttcaacatgcatggagcgccccatcctcattctcccagcgctcca
gcgtcagctctcgctgctccacggctcccagcaagcccatcggtacaagcgccaccacct
ttctccctagcagctccagcgatgcttccacggcctaacgacatcctaaagacagccatg
atccagagctccatccccacagctccccttgcccccatccactccaccaccgccaaccat
aataatattacccctgcagcctctctaccccagcctctccttccacatactccagtaaca
ctgattcagaagacattaccagagggacatatactcacaggaagagtacaggcagcgtgc
cctcccttggagcaacagcagcttccggcctcacagatccagcaggctgcctcttcgaag
gatactgttgtactggccaacccttctcagtacccgagcactccttgtactccattggtg
gcagaagggcaggcgttcaccgtagcaggcgtacaaagtgcccaaggaccacgtatgact
ttccagaacattgccccaaaaccttccctgcctgcacagccaccccttcagcatccgcta
caccaccagccacaccaccaacagcagcaacaacagagcttggtcattgtcagccctaat
ccacagcccaatcctgcctttgccccagccatccaccacattgtactgaccaaccccaca
accatgcagaatgcccagaccatccaactttcaggtcaacctgccacgtctcctcaaccg
gcctcttcacccggccagctcagctcttgccccagtccacagatgctgtcttcaccctca
aatcccgtccagagccctcctcccactgtcagccaaatgctgtctgtgaagcggcagcaa
cagatacagatccacacatcaccacctcctcctccccctccccctcctccgccaccacca
cctcctccaccaacccctcccatggccccacccatggcccctgcccagactacctccact
gaatcaagcttgattaaacaattgctgcttccaaagcgtggccctacaacaccaggaggt
aagcttattctcccagcaccacaggtccctcctcctgccagcactagggcacctagccca
caggtagtttaccaggtaaccagtagtagccagggaactccgcaagcaccacagttgaac
gtacagttgatgcaaagctcactgcagggtgcaggtgctgtacagactgtgcccatctca
atcctaccagggcagatactttccacctccaaccctgccaccatcttacaggccacacct
agtaaccaggtcaccttcacggtagtgccaaactcgagtttccccaacgcagctgttagt
agccaggggacaccgtctccgctggtttcacagactggtctgaacatgaacacgtcgccc
cccacgcttggtttccaactgaccccgcacataccacctcctgtatctacttgcacaacg
cccgtgccaccttttcgaggtgacaaaatcatctgccaaaaggaggaggaagccaaggat
gctacaggacttcacatccatgagagaaagattgaggtgatggagaactccttggtaact
gaagtctccaccaaagccagcaatgggcagcctatggtggttgatggacctggggccaag
ctgctcaacggtaggaagtctgactcaagtctacctccataccactcagggaacagccag
ccagaggctctgcagggcacacaggccctcaatggccccactttacagggcaacgatggc
acggccaaacagatgtcaggaggttcactttccgaatccagaaagccccttgtaaatggg
gtgtgtgactttgaaaaaggggaagccacaactggtacccacacaagcaaaaacattcca
aatcataaagcttccaaacatatgggcaacggggatgtgctacttcctcagaaagtacac
gagacttttactgactctctttcaccccagcaggccactgccaaagcagagcagctggaa
cgactggccaatgggccgaaaagcttcggtcacagtgctgagatttccaacggcccgtca
gcccagaacatggacacgacgggctttcggcaacagcacccacctcacaaccacatctct
gcagccacacctaccagccagaattcttctggagcagaccaggccactaacggcacttct
gagagcaggcccctgaagagaccagcagaagatgcttcaggaattcccaacaaggtggga
gtgaggatagtgaccatcagcgaccccaacaacgctggcaacagtgcaacaatggtggca
gtcccagcaggtgtcgacccaagcacagtagcaaaagtagcaatagaaaatgtagcgcag
cagagacccagtgtgcctgctacgcttcctgaaaccaccactcggcagccggtgttggcc
cagtctccgcccccagcggttcagactgcacagggagtcagtcagagttcggttcctcca
ggtgatggtcctctctcttcggatcagacccgcaaacctggacagaacttcaaatgtctc
tggcaggcctgtaaaaggtggtttgagacgccgtcgcaggtgttctaccatgcggctacg
caacacggcaataaagaggtttaccctggccagtgcctgtgggagggctgtgaacccttt
acacgccagagactctcttttatcacacatctacaggacaagcactgctctagggaagca
cttctagctgcactcaagcttgaggaaacgcaaggcagcaattccaacccttccaagtct
cccccaccggcaagcagcagctcggctcctacccggccacagaaagcgatagtgaatcac
ccgagtgcggctctcatggccctgcgccggggctcgcgcaaccttgtgttcagagacttc
actgacgataaagagggaccactgaccaaacacattagactaactgctgccttaacgtta
aagaacattgccaagtattcagactgtggacaaacattggtgaagcggcatgagaaccac
ctctcggtgctggcgctcagcaatatggaggtctccaccacgctcgcgaaatgcctttat
gaactcacgcacacactgcaggcttga
DBGET
integrated database retrieval system
