Clarias gariepinus (North African catfish): 128508409
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Entry
128508409 CDS
T10780
Symbol
fip1l1b
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1 isoform X1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
128508409 (fip1l1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgar03019
]
128508409 (fip1l1b)
Messenger RNA biogenesis [BR:
cgar03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
128508409 (fip1l1b)
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GFIT
Motif
Pfam:
Fip1
Motif
Other DBs
NCBI-GeneID:
128508409
NCBI-ProteinID:
XP_053335719
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Position
20:1852513..1860862
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AA seq
567 aa
AA seq
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MSAEEAEKLILTPPAVSETPVGDEEEEWLYGDEGETKETEEEEAKLTVAVSAPTAPEGPE
ENSTGNGVATQEEAQGDNEDSESDSDDDDDDVRVTIGDIKTGAPQYTTYGATPVNLNIKT
GGSRPYGAVGAKVKGVDLDAPGSINGVPVLEVDMESFEEKPWRKPGADLSDYFNYGFNEE
TWKAYCEKQKRLRMGLDTLNISTATSKISVQQGRTGNEKETVLPVHVPKTDFTTPSSLYK
AGLNPASGNSSLPVSPYSCPHRISPPQWAGPASQDTPYYTKSTGTIDVIGGQTATISRVE
GRRRHNLEGNNIQVISEHSSSEPEATPAKLPTFFPPNMPPPPFLPPPPVSQAPPLIPPPR
LPITVPPPGFPPPPSGPPPSLMPTLDNSGHPGAYDCRPVTPFPFPPGGYPPPMQAPVNNW
PGMIDNSKQWDYYPRRDKEREKERERERTRERGHEREREREREHSPASMAYNSDEERYRY
RDYGDRGYERHRERSSREKEERHRERRHREKEEGRHKSSRSSSRRRHDSEEGDGHRRHKH
KKSKRSKEGKEPSEERAADQENQEAME
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcggaagaagcggagaaactgatcctgacccctccggcggtgtctgagactcct
gtgggggacgaggaggaggaatggctgtacggcgacgaaggagaaaccaaggagacagaa
gaggaggaggccaagctcacagtcgcggtcagcgcccccactgctcctgaaggccctgag
gagaacagcaccggaaatggagtagccactcaggaggaggcgcagggggacaatgaggac
agcgagagtgacagcgatgacgacgacgatgacgtccgcgtcaccatcggagacattaag
acgggcgcgccccagtacacgacgtacggagcgacgccggtcaacctgaacataaagacg
ggcggcagcagaccgtacggagcagtgggagcgaaggtgaagggtgtggatctggacgcc
ccaggcagcattaacggcgtccccgtactggaagtggacatggagtcgttcgaggagaag
ccctggaggaaacctggtgctgatttgtctgattactttaattacggctttaacgaggaa
acctggaaggcgtactgtgagaaacagaagcgtctgcgtatgggcctggacaccctcaac
atcagcactgctaccagcaagatttctgttcagcagggcaggactgggaatgaaaaagag
actgtacttcctgttcacgttcctaaaacagacttcaccaccccgtctagcctgtacaag
gccggcttgaacccagcgagtggtaactcttctctgcctgtctccccttactcatgccct
cataggatatcccctccacagtgggcggggcctgcatcccaagacacgccctattatacg
aagtctaccgggaccattgatgtgatcggtggacaaacggctactattagccgggtagag
ggacgccgccgacacaacctggagggtaacaacatacaggtgatctccgaacactcgtcc
tccgaaccagaggccacgcccgccaaactccccaccttcttccctcccaacatgccgccg
cctcctttcctgcctccgcccccggttagccaagccccgccccttatccccccaccaaga
ctcccgattactgtccctcctcctggtttcccgcctcctcccagtggcccgcccccttca
ctcatgccaacattagacaacagtgggcaccctggagcgtacgactgccgtcctgtcact
ccgtttcctttcccacctggtggttacccgccgcccatgcaggcccccgtgaacaactgg
cccgggatgatcgacaactcgaagcagtgggattattaccctcgccgagacaaagagcga
gagaaggagagagagcgggagaggacgagggagcgaggacacgagcgggagagagagcga
gagcgagagcatagccccgcctccatggcctacaacagtgatgaggagcgctaccgttac
cgtgactacggagaccgcgggtacgagaggcaccgggagcgctcaagccgagagaaagag
gagagacatcgcgagaggagacaccgagagaaggaggaagggaggcacaagtcctcacgc
agcagtagcagaaggaggcacgacagtgaagaaggtgacggccatcgcagacacaaacat
aagaagtctaagaggagtaaagagggcaaagaacccagcgaggagcgagcagccgaccag
gagaaccaggaggccatggagtaa
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