Clarias gariepinus (North African catfish): 128508633
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Entry
128508633 CDS
T10780
Symbol
ddx21
Name
(RefSeq) nucleolar RNA helicase 2
KO
K16911
ATP-dependent RNA helicase DDX21 [EC:
5.6.2.7
]
Organism
cgar Clarias gariepinus (North African catfish)
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cgar03009
]
128508633 (ddx21)
03036 Chromosome and associated proteins [BR:
cgar03036
]
128508633 (ddx21)
Enzymes [BR:
cgar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
128508633 (ddx21)
Ribosome biogenesis [BR:
cgar03009
]
Eukaryotic type
Pre-60S particles
Helicases
128508633 (ddx21)
Chromosome and associated proteins [BR:
cgar03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
128508633 (ddx21)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
GUCT
Helicase_C
ResIII
CMS1
ERCC3_RAD25_C
Cas3-like_C_2
Gly_acyl_tr_C
Motif
Other DBs
NCBI-GeneID:
128508633
NCBI-ProteinID:
XP_053336006
LinkDB
All DBs
Position
20:complement(15763420..15784154)
Genome browser
AA seq
773 aa
AA seq
DB search
MPSLVLSSSDNVTTMNDVDEGSDNNVEIKKKKDKAKKSKMIVTDESANCDPPAPKKIKKE
KMDTAAGTAQTSPDVNGNIGKKPVKVENLHSSDELMTPAGDQSEKKKKKKKKTATPDETT
DDQAQSVNGISKKSSKIQAKVNGHSTDSTSTQSSDDSNSESEKDVETPEQKEGAFSNFKI
SPETIKLLQARGVTYLFDIQVKTFNSVYDGEDVIGQARTGTGKTFSFAIPLVERLLSGGD
DKRRGRAPKVLVLAPTRELAIQVSKDFKDITKKLSVHCFYGGSSYNPQVEAIRNGIDVLV
GTPGRIKDHLQNNKLDLSQLKHVVLDEVDQMLDMGFAEQVEEILSASYKKGDESNPQTLL
FSATCPPWVYDVAKKYMRSEYVHVDLIGKKSQKAATTVEHLAIACHWSQRAAVIGDVVQV
YSGSHGRTIVFCETKKEAHELSMNTSIKQSAQSLHGDIPQKQRELTLKGFRNGTFEVLVA
TNVAARGLDIPEVDLVVQCSPPKDVESYIHRSGRTGRAGRTGICICFYQRKEEDQLRYVE
QKAGITFKRVGVPTANDIVKSSSKDAVRFLDSVPPAAIEHFRTAAERLVEERGAVEALAA
ALAHISGATSLEQRSLLNSDAGFTTLVLNCSQEMHNIGYAWRGLKEQLGEEIDDQIKRMT
FLKNKKGVCFDVPANKVKEIQDKWQDGRRWELTIATELPELEESMRNRGERGSSAGIRGR
GGFRSGSRSGFRGGNNRSGGRGGGGRGGRGGRGGRGGGRGGAQKRNFSQAFDY
NT seq
2322 nt
NT seq
+upstream
nt +downstream
nt
atgccatcattagttttaagcagcagtgacaacgttaccactatgaatgatgttgacgag
ggatcagacaacaatgtagaaattaagaaaaagaaggacaaggccaagaagagtaaaatg
atagtgacagatgagtctgctaattgcgatccaccagctcccaaaaagatcaaaaaagaa
aagatggacacagccgccgggacagcgcagacgtctcccgatgttaatggaaacatcggg
aagaaaccagttaaagtcgagaaccttcattccagtgatgagctcatgaccccggcaggt
gatcagtcggagaagaagaagaaaaagaaaaagaaaacagcgacaccagatgagacgaca
gacgaccaagcacaatctgtcaacggcattagcaaaaagtcatcaaagattcaagcaaaa
gttaacgggcattccacagactctacctcgacgcagtccagtgacgactccaacagtgag
agtgaaaaggatgtggagacaccagagcaaaaagagggcgccttctccaatttcaaaatc
tcaccggagaccatcaagctactccaagcgcgaggcgtgacgtatctgtttgacattcaa
gtaaagacctttaattccgtgtacgacggggaggacgtgatcggccaggcccggaccggc
acaggaaagacgttctcttttgcaatcccactagtggagaggctgctgtcaggaggcgac
gacaaaagaagagggagagctccaaaggtgctggttcttgcacccactcgagagctggca
attcaggtgtctaaagatttcaaggacattaccaagaagctctctgttcactgcttttat
ggaggaagctcttacaacccccaagtggaagccatccgcaacgggatcgatgttctcgtt
ggcaccccaggccggataaaagatcacctccagaacaacaaactggatctgtcccagctg
aaacatgtggtgctggatgaagtggaccaaatgcttgatatgggcttcgctgaacaagtg
gaggagatcctctcagcttcctacaaaaaaggtgatgaaagcaaccctcagactctgctc
ttttctgccacttgccctccttgggtttatgatgtggctaagaaatacatgcgctccgag
tatgtccatgtagaccttatcggaaaaaaatctcagaaagcagccactacagttgagcat
ctagccatagcatgccattggtctcagagggcagcagtgatcggcgatgtagtgcaggtg
tacagtggcagccatggacgaaccatcgtcttctgcgagaccaagaaggaagctcatgag
ctgtccatgaacacctcgattaaacagagtgcacagtctttgcatggagacattcctcag
aaacaacgagagctcacactgaaaggcttcaggaatggcacctttgaggtgctggtggcc
accaacgtggctgcacgaggacttgacatcccagaagttgatttggtcgtacagtgttca
cctccaaaggacgttgagtcgtatattcatcgctctgggcgaactggcagagctggaaga
actggtatctgcatctgtttctatcagcgcaaagaagaagaccagctgcgctatgttgag
cagaaggctggcattacgtttaagcgcgttggtgtcccaactgccaacgacatcgtcaaa
tcctccagtaaagacgcagtcaggttcctggattctgtacctccagcagccatagagcat
ttccgcacagcagccgagaggctagttgaagagcgcggcgcggtggaagcactagccgct
gctcttgcacacatatcaggagccacgagtctggagcagagatcactcctcaactcggat
gcaggttttaccacgttagttctcaactgctctcaggagatgcataacatcggctatgca
tggcgagggctgaaggagcagctgggggaggagatagacgaccagatcaaacgaatgacc
ttccttaagaataaaaagggggtttgctttgatgtcccagccaataaagtgaaagaaatc
caggacaaatggcaagatggccgcaggtgggagctaaccatcgccaccgaacttcccgaa
ttggaggaaagcatgaggaaccgtggagagcgagggtccagtgcaggaatcagaggtcgt
ggcggattccgcagcggttcccgcagtggcttccgtggtggtaacaaccgaagtggagga
aggggaggaggaggaagaggaggaaggggtggaagaggaggaaggggtggaggaagaggt
ggtgctcagaagaggaactttagccaagcctttgactattaa
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