Clarias gariepinus (North African catfish): 128508638
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Entry
128508638 CDS
T10780
Symbol
tarbp1
Name
(RefSeq) probable methyltransferase TARBP1 isoform X1
KO
K15333
tRNA guanosine-2'-O-methyltransferase [EC:
2.1.1.34
]
Organism
cgar Clarias gariepinus (North African catfish)
Brite
Enzymes [BR:
cgar01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.34 tRNA (guanosine18-2'-O)-methyltransferase
128508638 (tarbp1)
Transfer RNA biogenesis [BR:
cgar03016
]
Eukaryotic type
tRNA modification factors
Methyltransferases
128508638 (tarbp1)
Chromosome and associated proteins [BR:
cgar03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
128508638 (tarbp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
128508638
NCBI-ProteinID:
XP_053336019
LinkDB
All DBs
Position
20:13175692..13209424
Genome browser
AA seq
1591 aa
AA seq
DB search
MSDFLIKVLVAQCGDVERTLDVLCWPSCACPAVERVEALRLFIRELVHTEQSGACSGFNS
RESFICKLHSVIWNNCVPLLKLIPMESIRSREDSVAHSGERKEMLHATCALLMMCVRECQ
TDTLDKLFSLVLPAFSGKSDRSEVDLGVAVEVLAVLLSGFPSNTALTKKALSCTLGSVKE
LSDTWVSKITVRIWCTCLNSLSPEMQSDILHHLWVDLLGWYEREPSDVVTSRLLLCLTAL
SDFLFSPDQTASNPLMAHPFFRAVQAGLVHKDTVSRKRALYLLNRCLSMAEARNADLTMC
EKDFFFKWRVEQRSVLQEFWKAYALVLETLEEYQIHVIRPVLSRIDTLVQTTSAGTQGGE
LIHPSWLLCVYQRMFHSENKAVIKEGVMHLLGLQMPRDPAFAFAFSQFVVGPLVDVLAET
SLYHRSAENVGECPEVGLKLQNFMVMFFSSLPEDTQGSVLLQILERLNSRRWCSVPLLFL
SQTLSCLSPCPLLKTDGLHILREVLGCTMVTHHVLLRGAVQCFLLETVLRLSDVSEVSLD
EVFGFLSHFRAEESLCPGTKIWEKVCDWLMVNEEAFQPASTSTGVFPQNVSVHSYHLLKT
FLTIPAGAEQTDRLPIEGDAELLARTLLFSVTLDWRRSEKQRPGDMGLEELFGPLLDVLQ
RLNTSVYLSVCKIDKCLQLMLRLLVLLGRYVERSRVKEDKMVVALTQLLLGVAEPVQEFI
LRRLSGELQEFSDIGRANLYLSLLREMIKTYIKVPSYGSNLQKNYVSRLTINCVRLLKEP
SEQNPSIAGQVQKAVSMATLALLCELADKCLFDFQSEAMRSLCSLTAYFCPSSPTTQCFN
QSLLKPSSTADVSGCLYGDPLLRDWSKVVAFFLRDQWTCLSFLQKFAETHRAAEAFQAAV
EALSLLPSDLVLPVLDFMCAALPQVLHEEALCVQGVSVSWRLVHSLNTNAHDFWPVLRAF
VRLALHRSFLELQDVQSHKITGCIQQVTRELIELSQAKLGVLNVLIEHCCSTWLPSDPNK
DADTVLQSALNHLDTLTEACIYGPIYRRDQRLLLEVQTYVEQLGEELAANVVINSWVRDD
QFPRLCVLAFLSHLDPYNSLHQRLMENLVQCLLKKDKDISKSKVRHYSNSMQHRVKNRVW
QTLLFLLPKLRTEFVVEYVFGLVCEAGFGNNQPSVKYLIEWVLILILHQNPSQIERLWVC
FNVDQEKTKTSICTFLSVLVHLGILLPKLEDKARQWQKAVEVILLWCFSHNFTVRLYALL
ALKRVWGLEGVRCLAEKEQYGSGSLQGLATVVEACLHQAEVMQNTGNAIKNWSRIQEHFF
FSAFHPLNDYSLETIFHTFPILSEMTDDECIPIWKFEKLVDFKHLSSLPLKNIGRELKEI
KPGDWVQQDRGELEQEERWVDVQKKIAPWSLNVEDVEPDLVVQQRGARLGKPTTALLVVA
SLIDKPTNLGGLCRTCEIFGASALVLGGLHHVGDKQFQALSVSSELWLPLMEVKPMDLAG
FLQLKQREGYSIIGVEQTVNSQSLQNYRFPEKTLLLLGNEREGIPVDLLQLLDTCVEIPQ
QGVTRSLNVHVSAALLVWEYTRQHLGPDQFA
NT seq
4776 nt
NT seq
+upstream
nt +downstream
nt
atgtctgattttctgattaaagtgttggtggcgcagtgcggggatgtggagcgcacgctg
gacgtgttgtgctggccgagctgtgcgtgtcctgcagtagagagggtggaagccctgagg
ctgtttatccgagagctcgtccacacagagcagtcaggggcgtgtagtggctttaatagc
agggaaagttttatttgtaaacttcactcagtcatatggaacaactgtgtaccactttta
aaactgattcctatggaaagcatcaggtctcgggaggacagtgttgcacacagtggtgaa
aggaaggagatgctccatgccacttgtgctctcctcatgatgtgtgtgagggagtgtcag
actgacaccttggacaaactgttcagtttagttttacccgcgttttcaggaaagagcgac
agaagtgaagttgatctcggtgtggctgttgaggttctggcagtactgctctcagggttt
ccttccaatactgctttaactaagaaagctttgtcctgtacccttggtagtgttaaagaa
ctttcagacacatgggtctccaaaatcactgtgcgtatctggtgcacatgccttaactca
ctgagcccagaaatgcagtcagacatcctgcatcacctctgggtagatctgctgggttgg
tatgagcgagagccttcagacgtggtgacatcacgacttctactgtgccttactgctctt
tctgacttccttttctcaccggatcaaacggcgtccaacccattaatggcgcaccctttc
ttcagagcggtccaagctggacttgtgcacaaggacaccgtgtcccgaaagagagcactt
tatctgctaaacagatgtttgtccatggcagaggcacgcaacgcagatcttactatgtgt
gagaaagattttttctttaaatggagggtagagcaaagatcagtgctacaggagttctgg
aaagcctacgccttagtgctggaaactcttgaggaatatcagatccatgtgattcgacct
gttctgagccgaattgacacgcttgtccaaacgacttcagcaggtactcaaggtggtgaa
ctgatccatccctcctggttactgtgtgtctatcagcgcatgttccacagtgagaacaag
gctgtaataaaggaaggcgtcatgcatctgttggggcttcaaatgcctagggaccctgct
tttgcttttgctttctcccagtttgttgtaggtcccttagtggatgtcctagctgagacc
tcgctgtaccacagatctgctgaaaacgttggagaatgtccagaagtaggtctgaaactg
cagaatttcatggtgatgttcttcagcagtttgcctgaggacactcaaggatcggtgttg
ctgcagattcttgaacgtttgaactctcgacggtggtgttctgttcccctgttattcctt
tctcagactctgtcctgcttgtcaccctgccctcttctgaaaacagatgggctccatata
cttagagaggtacttggctgcactatggtaactcaccatgttcttctaagaggggctgta
caatgctttctgcttgagactgttctccgcctgtctgatgtgtcagaggtgtctctggat
gaagtatttggtttcctatcacatttccgggctgaggagtcactctgtccaggcacaaaa
atttgggaaaaggtttgtgattggttgatggttaacgaagaagcttttcaaccagcttca
acttccaccggtgtttttccacaaaatgtctcagtgcacagctaccacttattaaaaacc
ttcttgaccataccagctggtgcagagcagacagacaggctgcctatagaaggtgatgct
gaattgctagcccgcaccctccttttttctgtaactcttgactggaggagaagtgaaaag
cagcgtcctggggacatgggactagaagagctttttggccctctgcttgatgtcctgcaa
cggctcaacaccagcgtttacttgtcagtgtgcaagatcgataagtgtctccagctcatg
ttaagacttctggtgcttctgggcagatatgtagagaggagtagggtgaaagaagataag
atggtggttgccttgacacagctgctgttgggtgtggcagaaccagttcaagagttcata
ctaagaagacttagtggagaactacaggagttttctgatataggcagggcaaatctgtat
ctgtctcttcttcgggagatgataaaaacctacattaaagtcccaagctatggctccaac
ttgcagaaaaactatgtgtccagactcactataaactgtgtgagactccttaaagagcca
tctgaacagaatccatctattgctggacaggtgcaaaaagcagttagcatggctacgtta
gccttgctatgtgagctggctgataagtgtttgtttgacttccagtctgaggccatgaga
tccctctgctcactcactgcctatttctgtccatcttcacccacaactcagtgctttaac
cagtccttactgaagccttcctctacagcagacgtctcgggctgtctgtatggtgacccc
cttctgagagactggagcaaagtggtggctttcttcctcagagaccagtggacatgtctc
agttttcttcagaagtttgccgagacccacagagctgcagaggcttttcaggctgctgtt
gaggcactttccttgctgccaagtgatttggtgttgcctgtactggacttcatgtgtgca
gctttaccccaggttctacatgaagaggctttatgtgtgcaaggagtatctgtgtcctgg
agactggtacattccttgaatacaaacgctcatgacttctggcctgtcctgcgggcgttt
gtgcgcttggccctccaccgctccttcctcgagctgcaggatgttcaaagccacaagata
actggctgcatccaacaggttacacgtgagctgattgagctctcccaggccaagttggga
gttctgaatgtgctgattgagcactgttgcagcacctggcttccctctgacccgaacaaa
gacgctgacactgttttacaaagtgccttaaatcacttggacacactaactgaagcctgc
atctatgggccgatctacagacgggatcaaagactgcttctggaggttcaaacgtatgta
gagcagcttggggaagagcttgcagcaaatgtggtgattaacagttgggttagggatgat
cagttccctcgcttgtgtgttttggcctttctgagtcatcttgacccatacaatagtcta
catcagagactaatggaaaacctagtgcaatgcttactgaaaaaggataaggacatatca
aagtcaaaagtgcgtcattactctaactctatgcagcacagagtaaagaatagggtgtgg
caaacattgttgttccttctgcccaaactgaggacggagtttgtggtagagtatgtgttt
ggcctggtttgtgaggcaggttttggcaacaaccagccttctgtcaagtacctgattgag
tgggtcctgatcctgatcctccaccagaacccctctcaaatcgagcgcctgtgggtttgc
tttaatgtggatcaggagaagaccaagacaagcatctgtacattcctttctgtgttggtg
cacctgggcatcctgctcccaaaactagaggataaggcaaggcagtggcagaaggctgta
gaggtgattttgctgtggtgttttagtcataacttcactgtccgtctgtatgcattgctg
gcactaaaaagagtgtggggtttagaaggggtgagatgcctggctgaaaaagagcagtac
ggttcgggctctctgcaaggacttgcaacagttgttgaggcgtgtttacatcaagctgag
gtcatgcagaatactggaaatgccataaaaaactggtccagaatacaggagcattttttc
ttcagcgcctttcatccccttaatgattatagtttagagacaattttccacacattccct
attctgtcagaaatgacagacgatgagtgcattccgatatggaagtttgagaagctggtg
gactttaaacacctttcctctctacctttaaaaaacataggcagagagctgaaggagatt
aaacctggcgactgggttcaacaggacagaggtgagttggaacaagaagaacgctgggta
gatgtgcaaaaaaagattgccccttggagtctgaacgtggaagatgtggagccagacctt
gtggtccagcagagaggagcacgtctgggcaaacctaccactgccctcctggtggtcgcc
tcgcttattgacaagcccacaaatcttggtggtctttgtcgaacttgtgaaatctttgga
gccagtgctcttgtgcttggtggcctacatcatgtcggtgacaaacaatttcaagccctg
agtgtgtcttctgagctgtggcttcctctgatggaggtgaagcccatggacctggcaggt
tttctgcagctgaagcaaagagagggttacagtatcattggggtagaacagacagtaaac
agccagagtttacaaaattataggtttccagagaagactcttctactcttagggaatgaa
cgagagggtattcctgttgacctcctgcagttgttggacacatgtgtggagattcctcag
cagggagtgacacgttctctgaacgtgcatgtgagcgccgccctactggtgtgggaatac
accagacagcacttgggtcctgaccaattcgcttaa
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