Clarias gariepinus (North African catfish): 128508686
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Entry
128508686 CDS
T10780
Symbol
sf1
Name
(RefSeq) splicing factor 1 isoform X1
KO
K13095
splicing factor 1
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128508686 (sf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cgar03041
]
128508686 (sf1)
Spliceosome [BR:
cgar03041
]
Complex A
Other components
Complex A specific factors
128508686 (sf1)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SF1-HH
KH-I_KHDC4-BBP
KH_1
zf-CCHC
KH_12
zf-CCHC_3
zf-CCHC_5
Motif
Other DBs
NCBI-GeneID:
128508686
NCBI-ProteinID:
XP_053336133
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All DBs
Position
1:complement(24487905..24499518)
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AA seq
661 aa
AA seq
DB search
MATGANATPLGKLHPSIGAKRGFDSGPGAGLMPPPGPPASFPLPNFPQMPGAAFPGFPGA
AGSFPNPPITGPQSQGGDMSLKKRKKSRWSSETPDQKTVIPGMPTVIPPGLTREQERAYI
VQLQIEDLTRKLRTGDLGIPVNPEDRSPSPEPIYNSEGKRLNTREYRTRKKLEEERHSLI
TEMVGLNPEFKPPADYKPPATRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECCA
KIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTMENVKKAVEQIRNILKQGIETP
EDQNDLRKMQLRELARLNGTLREDDNRILRPWQNTEPRSITNTTLCTKCGGAGHIASDCK
FTSTYTPRQGDPPQSAQDKARMDKEYLSLMAELGEAPVPASGGGHNNNPPSGPRASGPNT
NQPPPNRPPWMNSGPSDNRNFHGMHGGPGGHGGPHNFPPPMPNMGGPPMPPNPNGMPPPW
MQPPPPPMGQGPSPHGHPMGLLPPPMGMMPPPPPPPNNQPPPPPSGPLPPWQQQAPPPPP
TSSMATSAPLPWQQNTTTTSTPATGNLPPWQQPQPAASSAAQPPPPMGNPSMVPPPPGVQ
PPLPPGAPPPPPPPPPGSAGMMYAPPPPPPPMDPNFVTMMGIPGMPPFGMPPAPPPPPPQ
N
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atggcaacgggagcaaacgcaaccccgctggggaagctgcacccgagtatcggcgctaag
cggggcttcgactcggggcccggtgctggcttaatgcctccgccggggcctccggcctct
ttcccgctaccaaactttccccagatgccgggtgccgctttcccaggatttcccggggct
gctggttcatttccaaatccacccattaccggaccgcagtcccaaggcggagatatgagt
ctaaagaagaggaaaaagagtcgctggagcagcgagactcccgatcagaagactgttatt
ccgggaatgcccaccgtcatccctcccggcttaactcgtgagcaggaaagagcttatata
gtccaactgcagatcgaagacctgactcgtaaactgcgtacaggagacctgggaatccct
gttaaccctgaggacaggtccccttctcctgagccaatctacaacagcgaggggaagagg
ttaaacacacgtgagtaccgcacccgcaaaaaactggaagaggagagacattcactcatc
actgaaatggttgggctgaaccctgagtttaaaccccctgctgactataagcctccagct
accagagtcagtgataaggtaatgatcccacaggatgagtacccagaaatcaactttgta
ggacttctcattgggccacgtggcaacactttgaagaacatagagaaagagtgctgcgct
aaaatcatgatccgtggtaaaggttctgttaaggagggaaaagtgggccgtaaggatgga
cagatgctcccaggagaggacgagcctctacatgctttggtcactgccaacaccatggag
aacgtcaagaaggctgtagagcagatccgtaatatcctgaagcagggtattgagacccca
gaggatcagaatgatctgaggaaaatgcagctgagggagctggctcgactcaatggcact
ttgagggaggacgataacaggattctgcgcccatggcaaaatactgagcctcgtagcatt
accaacactaccctgtgcacaaagtgtggaggagctggacatatcgcttctgactgcaag
tttactagtacttatactccacggcaaggtgacccaccccaatcagctcaggataaggcc
cgtatggataaagagtatttgtctctaatggctgagctgggggaggctccagttcctgcg
tctggtggaggacacaacaacaacccacccagtggtcccagagcatctgggcccaacacc
aaccagccacctccaaatcgtcctccctggatgaactcgggcccttcagataacaggaac
ttccatggcatgcatggtggtccaggtggtcatggaggtccccacaacttcccacctccc
atgcccaatatgggtggaccacccatgcctcccaaccctaatggcatgcccccaccgtgg
atgcagccacctcctccacccatgggccagggcccatctcctcatggacacccaatgggt
ttgttgcctccacctatgggcatgatgccaccgcctccacctccaccaaacaaccaacca
cccccgcccccatctgggccgttgccaccttggcaacagcaggccccgcctcctccacct
accagcagtatggcaaccagtgccccgctaccatggcagcaaaataccactactacttcc
accccagctacaggtaacctgcctccatggcagcaaccccagccagcagcaagctctgct
gcccagcctcctcctcctatgggaaacccttctatggtgccccctcctcctggagttcag
cccccactgccccctggtgccccacctcctccccctccaccacctccaggttcagcaggc
atgatgtatgcaccccctccacctcccccacccatggaccccaactttgttaccatgatg
ggaatcccaggaatgcctccatttgggatgccacctgctccacctcctccaccacctcaa
aattaa
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