KEGG   Clarias gariepinus (North African catfish): 128508781
Entry
128508781         CDS       T10780                                 
Symbol
smu1a
Name
(RefSeq) WD40 repeat-containing protein SMU1
  KO
K13111  WD40 repeat-containing protein SMU1
Organism
cgar  Clarias gariepinus (North African catfish)
Brite
KEGG Orthology (KO) [BR:cgar00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:cgar03041]
    128508781 (smu1a)
Spliceosome [BR:cgar03041]
 Complex B
  Other components
   Complex B specific factors
    128508781 (smu1a)
SSDB
Motif
Pfam: WD40 WD40_WDHD1_1st WD40_Prp19 WD40_CDC20-Fz Beta-prop_TEP1_2nd Beta-prop_EML_2 WDR55 WD40_MABP1-WDR62_2nd EIF3I Beta-prop_CAF1B_HIR1 Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 Beta-prop_EML LisH_TPL Beta-prop_WDR75_1st NBCH_WD40 Beta-prop_RIG_2nd Ge1_WD40 Beta-prop_Nup120_160 Beta-prop_TEP1_C WDR90_beta-prop_4th Beta-prop_Vps41 WD40_MABP1-WDR62_1st Beta-prop_NWD2_C Beta-prop_DCAF4 Beta-prop_HPS5 Beta-prop_IFT122_1st Beta-prop_IFT140_1st Beta-prop_NUP159_NUP214 Beta-prop_SPT8 Beta-prop_WDR19_1st Beta-prop_SCAP Beta-prop_WDR35_TULP_N Beta-prop_EIPR1 Beta-prop_BBS7 Beta-prop_DCAF12 WD40_RFWD3 Beta-prop_VPS8 Beta-prop_WDR75_2nd Beta-prop_IP5PC_F VPS8_N TFIIIC_delta LisH DUF7165 LisH_PAC1 Beta-prop_NOL10_N PROPPIN zf_topless LisH_WDR26 TPP1
Other DBs
NCBI-GeneID: 128508781
NCBI-ProteinID: XP_053336239
LinkDB
Position
2:17932528..17942615
AA seq 513 aa
MSLEIESADVIRLIMQYLKENNLHRTLATLQEETTVSLNTVDSIESFVADINSGHWDTVL
QAIQSLKLPDKTLIDLYEQVVLELIELRELGAARSLLRQTDPMIMLKQTQPERYIHLENL
LARSYFDPREAYPDGSSKEKRRAAIAQALAGEVSVVPPSRLMALLGQSLKWQQHQGLLPP
GMTIDLFRGKAAVKDVEEERFPTQLSRHIKFGQKSHVECSRFSPDGQYLVTGSVDGFIEV
WNFTTGKIRKDLKYQAQDNFMMMDDAVLCMCFSRDTEMLATGAQDGKIKVWKIQSGQCLR
RYERAHSKGVTCLSFCKDSSQLLSASFDQTIRVHGLKSGKSLKEFRGHSSFVNEATFTPD
GHHVVSASSDGTVKIWNVKTTECTSTFKSLGTSAGTDITVNNVILLPKNPEHFVVCNRSN
TVVIMNMQGQIVRSFSSGKREGGDFVCCTLSPRGEWIYCVGEDFVLYCFSTVTGKLERTL
TVHEKDVIGISHHPHQNLIATYSEDGLLKLWKP
NT seq 1542 nt   +upstreamnt  +downstreamnt
atgtctcttgaaatcgaatcagcagacgtgattcgtctgatcatgcagtatttgaaggaa
aataacctgcaccgcacccttgcgacgctgcaggaggaaaccacagtgtcccttaatact
gtagacagtatcgaaagctttgtggcagatatcaacagcggtcattgggacacagtgctc
caggctatccagtcactcaaactcccagacaagaccctgattgatctctatgaacaggtt
gtactggagctgattgagctgagagagcttggtgctgccaggtcactgctgagacagacc
gacccaatgatcatgctaaaacagactcagcctgagcgctacattcacctggagaaccta
cttgctcgctcctattttgaccccagagaggcgtacccagatggcagcagtaaggaaaag
cggagggcagctattgcgcaggctctggcgggggaggtcagcgtcgtgccaccatcccgt
cttatggccttgcttggtcagtctctgaagtggcagcagcatcagggtctcctgccccct
ggtatgactatcgacttgttcagaggtaaagctgcagtcaaggatgttgaggaggagcga
ttccctacacagctgagcaggcacatcaagtttggacagaagtcccacgtggagtgctcc
cgcttctctcctgacggtcagtatctggttactggctctgtggacggcttcatcgaggtg
tggaatttcacaacaggcaaaatcagaaaggatctgaagtatcaggcacaggacaacttc
atgatgatggatgatgcagtgctgtgcatgtgtttcagcagagacacagagatgctggct
acaggagcacaggatggcaaaataaaggtatggaagatccagagtggacagtgtttgagg
cgatatgaacgcgctcacagtaaaggtgtgacttgtctgagcttctgtaaagacagcagc
cagctcctttctgcatcatttgaccaaaccatcagagttcatggtttaaagtcaggcaag
tctctgaaggagttccgaggccattcctcgtttgtcaatgaagccacattcactcccgat
ggtcaccacgtcgtcagcgcctcctctgatggaactgtgaagatctggaatgtgaaaacc
acagagtgcacaagtacatttaagtctcttggcacctcagctggcacagacatcacggtg
aacaatgtgattctgcttcccaagaaccctgagcattttgtggtgtgcaatcggtccaac
acagtggtcatcatgaacatgcaggggcagattgtgagaagcttcagctccggtaagaga
gaagggggagatttcgtttgttgtacgctttcccccagaggagagtggatctactgtgtg
ggagaggactttgtgctttactgcttcagcacagtcaccggcaaacttgagagaaccctg
acagtccatgagaaggatgtgatcggtatcagccaccaccctcatcagaacctgatcgcc
acctacagtgaagatggcttgctcaagctctggaaaccttaa

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