Clarias gariepinus (North African catfish): 128508817
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Entry
128508817 CDS
T10780
Symbol
rfc1
Name
(RefSeq) replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar03030
DNA replication
cgar03410
Base excision repair
cgar03420
Nucleotide excision repair
cgar03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
128508817 (rfc1)
03410 Base excision repair
128508817 (rfc1)
03420 Nucleotide excision repair
128508817 (rfc1)
03430 Mismatch repair
128508817 (rfc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cgar03032
]
128508817 (rfc1)
03400 DNA repair and recombination proteins [BR:
cgar03400
]
128508817 (rfc1)
DNA replication proteins [BR:
cgar03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
128508817 (rfc1)
DNA repair and recombination proteins [BR:
cgar03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
128508817 (rfc1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RFC1
AAA_lid_RFC1
BRCT
AAA
PTCB-BRCT
AAA_22
AAA_5
AAA_33
AAA_7
Rad17
RuvB_N
AAA_16
AAA_30
AAA_14
RNA_helicase
BRCT_2
AAA_17
AAA_18
nSTAND3
NTPase_1
AAA_19
SKI
AAA_28
Motif
Other DBs
NCBI-GeneID:
128508817
NCBI-ProteinID:
XP_053336261
LinkDB
All DBs
Position
20:complement(12781574..12806973)
Genome browser
AA seq
1155 aa
AA seq
DB search
MDIRRFFAPKPGQGGGSSSTDDEPKNKRKLASKTTSSKLEEKRSAKRKKRVIADSDEEEE
EKKGKKSPKEKPAESRKKDPVTFVSDSDSDEAFLSLKKPSKHKENGCSKEKKDAEPKETK
SKQVKTSSVKSPSTKSEAKKNALSPTPPKSTPPKPTPTSVFDYFGSSSAKRSEKKLVAST
STKRKAPTQDVDETHADEAIAKQLQMDEDMELEKQIHEDEEFARTLAMFDEAPVTKKARV
ESRSPSKISSQANVAEPKPVLKKPSPKKPSPKKPSPKKPSPKKPSPKKPSPKKPSPKKSP
VKASSKLALMKKKADEEEERRKSEKEEKKSKLVSPKKEPVSPVSSETAATPKSSVNAGSA
KRISTPKSEAGSNKTSPTKPETSPEDSEKKRLNSTAYRNYLNREGPRALGSKEIPQGEEN
CLEGCVFVLTGVLESMERDEAKSLIERYGGKVTGNVSRKTTYLVLGRDSGVSKTEKAQGF
GTKIINEDELLELIRTKPGKKSKYEIAAEAESKAAKSRTPDPKTKGTPTGRRVSPRKPLA
NKSSPSPGKPRMSSSSPGASSRGSSSEIRKTLEFSAGKRTASTTEDDASSLLWVDKYRPR
SLKNLIGQQGEQSCANKLLRWLKSWHKNHSGNAKPSAARFGKFGGKDDGTGFKAALLSGP
PGVGKTTTAALVCEELGYSYVEMNASCTRSKNSLKEVIAESLNNTSIKNFYSGAAQTVSD
KHVLIMDEVDGMAGNEDRGGIQELIGLIKNSKIPIICMCNDRNHMKIRSLANYCFDLRFQ
RPRVEQIKGAMMSIAFKEGLKIPPPALNEVILASNQDIRQVLHNLSMWSATDKVMTYDQA
KADANNARKDMKMGPFDVCRKVFVSGEETAHMTLIDKSDLFFHDYSLAPLFVQENYINVR
PVAAGGNLKNHLVLLSKTADSICDGDLVDRQIRSRQTWSLLPTQAIYASVLPGELMRGYM
SHFPTFPSWLGKFSSTGKHSRIVQELSSHMSLKTLSSKQAVNLDYLPYMRSALLEPLRSH
GAEGAGQSVKLMDDYNIVKEDFDSIMEISTWGGQPDPYSKLDSKVKAAFTRAYNKESHLT
PYSLQAVKKGRRGTVDVDLSLDPENDLQAQEEEEEKETVDTDAMIKQKKAKPTKEVKQEK
AGSSGKGKGKGKGKK
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
atggatatacgcagattctttgcaccgaagcccggccaggggggcggcagcagcagcaca
gatgacgagccgaagaataaaaggaaactcgcttccaaaactacaagctccaaattggag
gagaaacgatcggccaaacggaaaaagagggtcatcgctgattcagatgaggaagaagag
gagaagaaaggaaagaaaagccctaaagagaagcctgcagaatctaggaagaaagatccg
gtgacctttgtgtcagattcagactctgatgaggcctttctgtcgttgaaaaagccttcg
aaacacaaagagaacggctgcagcaaagagaagaaggacgctgagccgaaggagacgaaa
tcaaagcaggtaaaaacgtcttcagtgaaatctccgagcacgaagagcgaagcgaagaag
aacgccctcagtccgactccaccgaagtcgacgccgcccaaacccacccccacctctgtg
tttgattatttcgggagctcctcggcgaagagatcggaaaagaagctggtggccagtacg
agcaccaagaggaaagcgcctacgcaggatgttgatgaaactcacgctgatgaagctatt
gctaaacagttacagatggacgaggacatggagttggagaagcagatccatgaagatgag
gagtttgctcggaccctagccatgttcgatgaggccccggtgactaaaaaggctcgtgtg
gagtcgcgttcgccctcgaagatcagctctcaagcaaacgttgcagagcccaagcctgtc
ctgaagaaaccttcacccaagaaaccttcacccaagaaaccttcacccaagaaaccttca
cccaaaaaaccttcacccaaaaaaccttcaccgaagaaaccttcacctaagaagagtcca
gtcaaagccagttccaaactggctctgatgaaaaagaaagctgatgaagaggaggaacgg
aggaaaagtgagaaggaggagaagaaaagcaaacttgtctccccgaagaaagagccagtc
tcaccagtttcatcagaaacagcggccactcctaaatcaagtgttaatgcaggaagcgca
aaacgcatttccactcctaagagtgaagcaggaagtaataagacatctcctacaaaacct
gagaccagtcccgaggactctgagaagaagcgtttgaattctactgcatatcgaaactac
ctgaaccgagaaggacctcgcgctctgggctctaaggagatcccgcagggagaggagaac
tgccttgagggatgtgtgtttgtcctaacgggtgttttggagtctatggagagggacgaa
gcgaagtcacttatagaacgctacggcggaaaagtcacgggaaacgtcagccggaaaacc
acgtacctggtcctgggtcgagatagcggagtctccaagactgagaaggcacaaggtttt
ggcaccaagatcataaatgaggatgagctgctggaattgattcgaaccaaaccaggcaaa
aagtccaaatacgagattgctgcagaagctgagagtaaagccgccaaatccaggacccca
gaccctaaaaccaaaggcacccctacaggacgcagagtttctccccgaaaaccccttgca
aacaagagcagtccctcgcctgggaaacctcgtatgtcttcctcttctcctggagcttca
agccgaggctcttcatcagagatcagaaagactctggaattcagtgcgggaaaacgcact
gcctccacgacggaggatgatgccagcagcttgttgtgggtggataagtaccgcccccgc
agcctgaagaatctgattggacagcagggtgagcagagctgtgccaataagctgctgaga
tggttgaagagctggcataaaaatcatagcggcaacgccaaaccatcagctgctaggttt
gggaagtttggaggtaaagacgacggtactgggtttaaagctgctttgctctctggacct
cctggtgtagggaagaccacaactgctgctcttgtgtgtgaggagttgggttacagttac
gtggagatgaacgccagctgcacccgcagcaagaacagtctaaaggaagtcattgctgag
tctcttaataacacgagcattaagaatttctactcaggtgcagctcagacggtcagcgat
aaacatgttctcataatggacgaagtggacggcatggcagggaacgaggacagaggagga
atacaggagctgattggtctgataaagaattcaaagatccccattatttgcatgtgcaac
gatcgtaaccatatgaagatccgctcacttgctaattactgcttcgacctgcgtttccag
aggcctcgtgtggaacagataaagggtgccatgatgtccattgcatttaaagaaggttta
aagatcccgcccccggccctgaacgaggtcatcctggcgtcaaatcaggacattcgtcag
gtgctgcataatttgagtatgtggtcagccacggacaaggtcatgacctatgaccaggcg
aaagcagacgctaacaatgccaggaaagacatgaaaatgggaccatttgacgtctgcagg
aaagtgtttgtctcaggtgaagaaaccgcccacatgaccctgatcgacaagtcagacctt
ttcttccatgactactcgctggcaccgctgttcgtccaagagaactatataaacgtccgg
ccagtcgccgcagggggaaatctgaagaatcatttagtgctgctgagtaaaacggcagac
agcatctgtgacggagatttagtggatagacagatccgctctcgccagacctggtctctg
ttacccacgcaggcaatctatgccagtgtgctgcctggggaattaatgcgtggctatatg
agtcactttcctacatttcccagctggctggggaagttttcatccactggaaaacacagt
cgcattgtacaggagctttcctcacacatgagtctgaagacactgagcagtaagcaggca
gtgaacctagactaccttccctatatgcgctctgccctgctggagccgctgcggagtcat
ggcgcagagggagccggtcagagcgtgaagctcatggacgactacaacattgtcaaagag
gatttcgacagcatcatggagatcagtacgtggggtggacaacctgatccgtactccaag
cttgactccaaggtgaaagctgctttcacacgggcttataacaaggagtcccacttaacg
ccatactcgctgcaggctgtaaagaaaggtcgcagaggaacagtcgatgttgatctgtct
ttagatcctgagaatgacctccaggctcaggaagaggaggaggagaaggaaactgttgat
accgatgccatgatcaagcaaaagaaggcaaagcctactaaagaggtgaagcaggagaaa
gcgggcagttctggaaagggcaaaggcaaaggaaaaggcaagaagtga
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integrated database retrieval system
