Clarias gariepinus (North African catfish): 128508861
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Entry
128508861 CDS
T10780
Symbol
spg11
Name
(RefSeq) spatacsin
KO
K19026
spatacsin
Organism
cgar Clarias gariepinus (North African catfish)
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cgar03400
]
128508861 (spg11)
DNA repair and recombination proteins [BR:
cgar03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
128508861 (spg11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spatacsin_C
Motif
Other DBs
NCBI-GeneID:
128508861
NCBI-ProteinID:
XP_053336329
LinkDB
All DBs
Position
2:complement(29318176..29351010)
Genome browser
AA seq
2381 aa
AA seq
DB search
MLSRPGARAPCALEVALVPDIGLSADIQHTVKARLAAGSALLCCLHADGKLTISDVSEPG
TPARVLEDSHTDFLWEVYTEQNKANKPRLLTMRPACNLRLHEIDSESQLTSVSECSTDRL
LQLVNRDLNASALFSMNLLSFVDGCCYLLLNGHVLVHLWWKEGSAEPELLSSCVLSLPSE
THEMFTDYQLCKGILFMLTSIGFIYVVDSADGKHLATVELPAYYISGQRDADLADSLSSF
CLLQISQDLSTAVVATSLNQALAVDLNDYFRLHINHLHCRQDPRPLPLIPTKPCDQDSIA
NSTYSQSVLGTHFQTDHSWEARLALLYKQAKAPVSSALRLPWYKDLPRSECQQAAATTKL
SQSAVSPGGAVMSLSLPEQTTPTQLIVSEFSAVLSFTSPGNSSTTLVYWDFQTRVVTCHC
IDAPALPVCWSEEEHLSLILKASGMSLVLFSVTQEELLNRLMVFGSAGVVDSLCHLNAWG
LCSMPIHSLQAGLKNRQLDMVDFFLKSKENILCPPTNYSLPDLSPTSTQMQLQNVQDLCP
ALDLLQSAIRDTNTEAQSRQFCEQLLSIALNFLNTQIRVILTSTPELDADLHECVKILNG
YISELRTYLRRYPWLEGGEPTSSDTVPGAAIEDEWEMRSVEEVVQCAILNRELPRAQAYL
RRRNCPEQKLEELRKTGLRLAFTCLTHRDLQQATTLFTNMGFNVKEQLYNICVYTADCDL
RAFMVEELKRLNHLPTDDLQKVEFIKQIENLCSRPAARCSKAFDKKRVLQRSQMETENRN
LLQEILDEPLSCSIQSLVGSVRLDWVRHWDNDTQQSVLLSRLPDHLLGSCDPSVLWSYLT
SLHDQDRITAWLTYTAAQDCESSAVSKWPALTAAVVDGNTYCSDYMKDQILDMLARQEVF
VQSEMSDFEQLLWRLGQARGLMQDNSGPPVPQFHSTKGQDFHTCFIQHCLENNLHYLLYT
YLQHYRLTPSNCPAAGDRDLYESYPWFEMMVKMQSITRDLKNPELVFQASLTSAQVLLPG
SQASVSSMLLEGHSLLALSTIMFAPGGIDKVVTEGDKGQDVLSRVDPQLLRMALSAYPKL
KAALFPQSGPRFTSVSDVSIYHLMQSLHPLDPSRLFGWQSANTLGTAETSAELPHFSSPH
LVNKYALIENLDFLYYLQHGRPSFAYGIFIIQHLADSTNAKLQMSRAVEQAYSLGLLNFS
SSSIAAACVCFFELLGVCSLKLRVDLKALNLILRLWSQNCEDSSMASLKQSLVDKVNKMV
ASERQTLEELLLHLEGAVRDGVESRGISRSSYEAGQEWALPVQFCHLHDLPLTTQYLQDC
ANDGQWLNFLLFVQIHHYPLQQVKYLAASFSPGLWAHFLLAFQDLQLMHSQQALEGQRDF
LSSLMKEESSKCPKDLFQVLFLSQEQSNPWQYLLVEAVTLHSPPLTVLAACHKDAELIQC
LCVWILTTVEEDIAQEATSHINEHPGHHTWNLHDLSILWKILLQKCKIGPLIRGFQLFQR
ESPLIHMLQMYELCYDYINYQGAKEKLLEFQKCLLNLRNSGSVLGLECFPVQWVEAQASV
LLLTLLQQCGTQYELCRLLQLLADMDHMLKSNGPDFKKLSRLSQILADTPVPLTQCLLEN
YTTEILQRECQIMLEELQGLDCFCHARKVAELAGLPIDRLIINELLRDLKVLKATRQWER
QETRLAFWRKCQEQFKANCIGAESACQFFLSQTEDPVQKETELLQVQEQCLLLALAAHWL
CQHKSPALERLAELEKRQWEWRIRRKVLTTALEQQSLFTPATGPDAFDGLLKEYSFSKMI
ILDDQAYLNIEGLPMTEEGCLMEEKERKALSTLIGQLLDEGSVHEASRVCRYFELQHRDV
WLVLQCRGLACGEIQPGLQEFLSPDREQRRSLHSCSSTGSLSSFVVVSSPEDQALSQLQL
LVDQCRHGKSYCKQVLSLYELSKELRCSYSEISSEEPEAVLRKVLLSQQPERYKKAQAFI
SVQGLQPDSVAQLITSAVLDGLLAASQDRETERHIYSPSEGKEAFLQLAKLCGDPNLVGI
KLLDIIPTVSLAELGCTVELLILAHDCFSLTCNMEGIVKVLQAARHLSHTHLAHGERYGL
LVRLLTGIGRYNEMTYIFDLLNQNHRFEMLLRKKVESNTRLKTALLDYIKRCLPGDSEKY
NMVALCFSMRREIGENHEGAARTQLKLIESQPWVVTPELKSSLEKVLFLLKDAAESYSKD
SCMRQALRCVKMAKLITLQLHFLNHGQDHRVVNLRSSEILNAMMPLPRCYQSFIVAEAYD
YSPDWAEILYQKVILKGDFSYLEEFKLHRPLPASLFEEISKKLIVNKPPNTVSQNLKKLL
QYCENVYTCYKLAYDHNFVDVANTLLQDSKTGSYLNDRLSS
NT seq
7146 nt
NT seq
+upstream
nt +downstream
nt
atgttaagcaggcctggagcgcgtgcaccctgtgcattagaagtcgctctcgtgcctgac
attgggctgagtgcagacatccagcacacggttaaagccaggctggccgcaggctctgcg
ctcctctgctgtctgcacgccgacggaaagctgacgatcagtgatgtctctgaacctggc
actccggcccgcgtgctcgaagactcgcacacagactttctctgggaggtgtacactgag
caaaataaagccaacaagcccagactcctgactatgagaccagcctgtaatcttagactt
catgagattgattccgaaagccagctgacatcagtgtccgagtgttctacagaccgactc
ttgcagcttgtcaatagggacttaaatgccagtgcactgttctctatgaatctgctgtca
tttgttgatggctgctgttacctccttctgaatggacatgtccttgtacatctttggtgg
aaggagggctctgctgagccagagctgctgtcctcctgtgtcctcagcctgccttctgaa
actcatgaaatgtttactgattaccagctctgcaaaggcattctgttcatgctaacgagc
attggattcatatacgtggttgacagtgcagatgggaagcaccttgctacagtggagctc
cctgcttactacatatcaggacagagagatgctgaccttgcggattccctctcttctttc
tgccttctccaaatctcacaagacctcagcacagccgtggttgccaccagcctgaaccaa
gcactggcagttgacctcaatgattatttcaggcttcacataaatcacttgcactgtcgg
caggatcccagaccacttcctctcataccaacaaaaccttgtgatcaggacagcattgct
aactcaacctacagtcagtctgtactgggtacccacttccaaaccgatcactcatgggag
gcaaggctggcattgctctataagcaagctaaagctccagtttcttcagctctacggctg
ccatggtacaaagacctccctcgctccgagtgccagcaagcagcggccaccaccaagctc
agtcagtccgctgtatcacctgggggtgctgtaatgtctttaagtctgcctgaacagacc
acaccgacccagctgattgtctcagaattttcagcagtgcttagctttacctcacctggg
aacagcagcacaacccttgtctactgggactttcagactcgggttgttacatgtcattgc
attgatgcgccagcattgcctgtttgctggtcagaagaggaacacctctctctgattctg
aaagcatcaggaatgtctctggtgctattctcggttactcaggaggagctgctgaataga
ttgatggtgtttggtagtgctggtgtggtagactcactgtgccatcttaatgcttgggga
ctctgttcaatgccaatccattccctccaggctggactaaagaaccggcagctggacatg
gtggatttcttcctgaagagtaaggagaacattctctgcccacccacaaactatagtctg
cctgatctgtcaccaacctcaacacagatgcagctgcaaaatgttcaggatctgtgtcca
gcattggatctgcttcaatctgctatcagagacacaaacactgaggctcagagtcggcag
ttctgcgaacaactgctcagcattgcattaaacttccttaacacacaaatccgagtcatc
ctgaccagcactccagagttggatgctgacttgcatgagtgtgtgaagatcttgaatggt
tatatctctgaactgcgtacttatctgaggaggtacccctggctagaagggggtgagcct
acttcctcagacactgtccctggtgctgccattgaagatgaatgggaaatgcgctctgtt
gaggaggttgtccaatgtgccattttaaacagggagctcccacgtgcgcaggcttatctg
cgcaggcgcaactgtcccgagcagaagctggaggagctaagaaaaactggcttgagactg
gcattcacgtgtcttacacaccgagacctgcagcaggctacaacactgttcactaacatg
ggatttaatgtaaaggagcaactctacaatatctgtgtgtacacggctgattgtgacctt
agggcctttatggtagaggagctgaaaagacttaatcatctccccactgatgacttacaa
aaagtggagttcattaagcagattgaaaatttgtgctccagaccagcagcaagatgttca
aaggcttttgacaaaaaacgggttcttcaaagaagccagatggaaactgagaacagaaac
ctgctgcaggagatattggatgaacccttgtcctgctccattcagtccctggttggctca
gtgcggctggactgggtcaggcattgggacaacgacacacagcagtctgtgctgctctca
cgactcccagaccacttgttgggctcctgtgacccatctgtgctgtggtcttacctcacc
tccctccatgaccaagacagaataactgcatggctgacttacacagccgcacaagactgt
gagagctctgctgtctctaagtggcctgcactcactgctgcagttgtggacggaaacacc
tactgcagtgattatatgaaagaccaaattctggacatgcttgccagacaagaagtgttc
gtgcagtcagagatgtctgactttgagcagttgctgtggcggttaggtcaagcgagaggt
cttatgcaagacaacagtggccctcctgtcccacaattccactctaccaaaggccaggac
ttccacacatgctttattcagcattgtctggagaacaacctacattatcttctctatacc
tacctacagcattacagattgactcccagtaattgccctgcagcaggagacagagattta
tatgagagttacccctggtttgagatgatggtcaaaatgcagagcatcaccagagatctc
aaaaatccagagctagtgtttcaggcaagccttacaagtgcacaggtgctgctacctggc
agtcaggctagtgttagcagcatgctgctggagggacacagtcttcttgcactctccact
ataatgtttgcacctgggggcattgataaggtggtgacagaaggcgataaaggtcaggac
gttttgtctagagtggacccacagctcctgaggatggctctgagcgcataccccaagctc
aaagctgccctttttccacagtctggcccaagattcacttcagtttctgatgtatcaata
taccatctcatgcagtcattgcatccactggatccctctagactgtttgggtggcagtct
gccaacacactcggcactgcagaaacatcagcagagcttcctcatttctccagcccccac
ttggttaataaatatgcactcattgagaatctagactttttatactatctccaacacggc
agaccttcctttgcatatggaattttcattattcagcatctggccgactccaccaatgcc
aagctacagatgagtcgggcagtggaacaggcttactctctcggccttctaaatttcagc
tcttcatctatagctgcagcctgcgtgtgcttctttgagttattgggtgtatgcagtcta
aaattgagggtcgaccttaaggctctcaaccttatcctcaggctttggagccagaactgt
gaggacagcagcatggcctcacttaaacagtctttagtggacaaggtgaataagatggtg
gcaagtgagagacagactctagaggaattattgttgcacctggagggagccgtgagggat
ggtgtggagagcagaggaatcagcaggtcttcatatgaggcaggacaggagtgggctctc
cctgttcagttttgccatcttcatgatctgcccctaactacgcagtacctacaggactgt
gccaacgatggacagtggcttaacttcctgctgtttgttcagatccaccactacccttta
caacaggttaaatatctggccgccagttttagcccaggtttgtgggctcacttcttactg
gccttccaggaccttcagctaatgcactctcaacaagccctagaagggcagagagatttc
ctcagctcactgatgaaagaggaaagctcaaaatgcccaaaggatctgttccaggtcctg
ttccttagtcaagagcagtcgaacccctggcagtacctgctggtagaagctgttacactg
catagtccaccgcttacagtcctggctgcttgtcacaaggatgctgagctaatacaatgc
ctttgtgtttggatcttgaccactgttgaagaagacattgcccaggaagctacctcccat
atcaatgaacatcctggccaccacacgtggaaccttcatgacttgtcaattctatggaaa
attctcctacaaaagtgcaagatcggccctctgattcgtggcttccagctgtttcagcgg
gaatctcccctgatccacatgttgcaaatgtacgagctctgctatgactacataaactat
caaggggcaaaggagaagttactggagttccagaaatgtctgcttaatctgagaaacagt
ggtagtgtcctaggattagagtgttttcccgttcagtgggttgaagcccaagcctctgtg
ctcctcctcaccctgttgcagcaatgtggaacacagtatgagttgtgcaggctgcttcag
cttctggctgatatggaccatatgcttaaatctaatggtcctgactttaaaaagcttagc
cggttgagccaaatcctggctgacacaccagtgcctctgacgcagtgccttctggagaac
tataccactgagatcctgcagagggagtgccagataatgcttgaggagctgcagggcctt
gactgcttctgtcacgccaggaaagtggctgagctggcaggcttgcccattgaccggctg
ataataaacgagcttttgagagatctgaaggtgttaaaggcgacgcgtcagtgggaaaga
caggagactcgtctggccttctggaggaaatgtcaagagcaatttaaggcaaactgcatt
ggagcggagtctgcttgccagttttttctttctcagacagaggatcctgtgcagaaagag
acagagctacttcaggtacaagagcaatgccttcttctagccttagctgctcactggctt
tgccagcacaagtcccctgcactagaacgattagcagagctggagaagcgccagtgggaa
tggcgcatccgccggaaggtcctcaccactgctctggagcagcagagcctgttcactcca
gccactggaccagatgcctttgatggcctcctcaaagaatattccttttccaaaatgatc
atcctggatgatcaagcttacttgaacattgagggtcttccaatgaccgaggaaggttgt
ctgatggaggagaaggagcgaaaggctctgtcgactctcatcggtcagctgttggacgag
ggaagtgttcatgaagcgagccgtgtgtgtcggtactttgagcttcagcacagagatgtg
tggctggtgttgcagtgccgtggtttggcctgtggagaaattcagccgggtctccaggag
tttctcagccctgaccgagagcagagaagaagcttgcacagctgctccagcacaggtagt
ctgtcctcatttgtggtggtttcctcacctgaagaccaggctctgtcccagcttcagctt
ttagtagatcagtgtcgtcacggcaagagctactgcaagcaggtcctcagtctctacgag
ctctccaaggagctgcgttgttcctacagtgagatctcctctgaagagccggaggcagtg
ctacggaaggttctcctgtctcagcagcctgagcgctataagaaagcacaggcgtttatt
agcgtgcagggattgcagccagactctgtagcacagctcatcacctccgcagtgctggat
ggactgctggctgcctcacaggacagagagacagagcgccatatatacagtccatctgaa
ggcaaagaggccttcttgcaactggctaaactgtgcggtgaccccaacttggtgggcatc
aagttattggacatcatccctactgtctccctggcagaactcggatgcactgtggagctg
cttatcctggcacacgactgcttcagtcttacctgtaacatggagggcattgttaaggtc
ttgcaagcagccagacacctcagtcacacacatctggcccatggggagagatatgggctt
ctggtccgattattgaccggtatcggacgatacaatgaaatgacttacatcttcgacctt
ctcaaccagaaccatcgttttgagatgctgctgagaaaaaaagtggagtcgaacactaga
ttaaagacagcacttctggattacattaagcgctgtctgccaggggacagcgagaaatac
aacatggtggctctttgtttcagcatgcgccgagagatcggagagaatcacgaaggagct
gctcgaacacaacttaaacttatagagtcccagccatgggttgttaccccagagctcaaa
agtagcttagagaaagtcctgtttttgctcaaggatgctgcagaaagttattcgaaggac
tcctgcatgcggcaagcattgcggtgtgtaaaaatggctaaactcatcactttgcagctt
catttcctcaatcatgggcaggatcatcgtgtagtcaacctccggtcatctgaaatactc
aatgccatgatgccactgccacggtgttatcagtcattcatagtagctgaagcatacgat
tatagtcctgactgggcagagattctgtatcagaaggtgatcctaaaaggagatttctcc
tacctagaagagtttaagcttcataggccacttccagcgagcctatttgaagaaatctct
aaaaaactcatcgtgaacaagccaccgaacactgtgagccagaacctgaagaagctactg
cagtattgtgaaaatgtctatacctgctacaaactggcctatgatcataattttgtcgat
gtggccaacacacttctgcaggactccaaaaccggcagttaccttaatgaccgattaagc
agttga
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integrated database retrieval system
