Clarias gariepinus (North African catfish): 128508917
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Entry
128508917 CDS
T10780
Symbol
top3b
Name
(RefSeq) DNA topoisomerase 3-beta-1
KO
K03165
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar03440
Homologous recombination
cgar03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
128508917 (top3b)
03460 Fanconi anemia pathway
128508917 (top3b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cgar03032
]
128508917 (top3b)
03400 DNA repair and recombination proteins [BR:
cgar03400
]
128508917 (top3b)
Enzymes [BR:
cgar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
128508917 (top3b)
DNA replication proteins [BR:
cgar03032
]
Eukaryotic type
DNA Topoisomerases
128508917 (top3b)
DNA repair and recombination proteins [BR:
cgar03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Bloom's syndrome complex (BTR)
128508917 (top3b)
FA (Fanconi anemia) pathway
128508917 (top3b)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_TOP3B
Toprim
Motif
Other DBs
NCBI-GeneID:
128508917
NCBI-ProteinID:
XP_053336378
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All DBs
Position
21:23847327..23868928
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AA seq
861 aa
AA seq
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MRTVLMVAEKPSLAQSIAKILSKGSCSSRKGLNGACSVHEYTGFFMGQNVRFKMTSVCGH
VMSLDFTGKYNNWDKVDPAELFSKAPTEKKEANPKLNMVKFLQVEAKACDYVVLWLDCDK
EGENICFEVLDAIRPVMNKPYGNECTVYRAKFSSITDTDICNAMNRLGEPNKNEALSVDA
RQELDLRIGCAFTRFQTKYFQGKYGNLDSSLISFGPCQTPTLGFCVERHDKIQSFKPETY
WVIQAKVFKGKESAITLDWDRVRVFDREIGQMFVNMAKSAREALVESVSKKEKAKQRPLA
LNTVEMLRVASSALGMGPQHAMQVAERLYTQGYISYPRTETTHYPENFDLKGTLRQQANC
SYWAETVKALIAEGINRPRKGADAGDHPPITPMRAATESELGSDGWRLYEYITRHFIATV
SPDCKYLQTTIAFQIGTEGFSCIGKTLISAGFTEVMPWQGIALEEALPSCEKGDVFTVDE
VKLLEKQTCPPDYLTEAELITLMEKHGIGTDASIPVHINNICQRNYVTVENGRKLKPTNL
GIVLVHGYYKIDAELVLPTIRSAVEKQLNLIALGKANFQQVLQHTLDIFKRKFHYFVDSI
AGMDELMEVSFSPIAATGKPFSRCGKCHRFMKYIQAKPSRLHCSHCDETYSLPQNGAIKL
YKELRCPLDEFELVLWTSGSRGKSYPLCPYCFCNPPFRDMKKGMGCNECTHPSCPHSLNS
LGIGQCVECETGVLVFDPNSGPKWRMACNKCTVVVHFFEQAHKVQVSQESCDICEASLVM
VDFHKARSPLADGETQHTGCVFCDPIFQDLVELKHAAMRHPMHRGGGARRGRGRGRGRRP
GGRGNPKKPKDKMAALAAYFV
NT seq
2586 nt
NT seq
+upstream
nt +downstream
nt
atgaggacagtgctgatggtggctgaaaagccctctctggctcagtccatcgccaaaatc
ctctctaaaggcagctgttctagccgtaaaggtctgaacggagcatgttcagtgcacgag
tacacaggattcttcatggggcaaaacgtgcgctttaagatgacgtcagtctgcggtcac
gtcatgagtctggatttcacggggaaatacaataactgggataaagtggatcctgctgaa
ctcttcagtaaagcaccgactgagaaaaaagaagccaatcctaaactcaacatggtcaaa
tttctgcaggttgaagctaaagcttgtgactatgttgtcttgtggctggattgtgataaa
gaaggagagaacatctgttttgaggtcttggatgccatccggccggtgatgaacaagcct
tacggtaacgagtgcaccgtgtatcgggccaagttcagctccatcacagacacggacatc
tgtaatgccatgaaccggctgggagaacccaataagaacgaggctctgtctgtggacgct
cggcaggaactggaccttcgaatcggctgcgctttcacacgcttccaaaccaagtatttc
cagggaaaatacgggaatctggactcctccctaatctcgtttggcccatgccagaccccg
acgctggggttctgtgtggaacgccatgacaagatccagtcctttaaacctgagacgtac
tgggtcatccaggccaaggtgtttaaagggaaggagagcgcgatcactttggattgggat
cgtgtgcgggtgttcgaccgagaaatcggacagatgtttgtcaacatggcaaagtcagca
agagaagccctggtggagtcggtcagtaagaaagagaaagccaagcagagacctctggcc
ttgaacacagtggagatgctaagagtcgctagttctgctttggggatgggtcctcagcat
gccatgcaggtagctgagcgcttgtacacacagggctacatcagttaccctcgtaccgag
accacccactaccctgagaactttgacctcaaggggacgctcaggcagcaggccaactgt
tcttactgggctgagacggtgaaagccctaatcgctgagggcattaaccgacccaggaaa
ggtgcagacgcaggagatcatcctcccatcaccccgatgagggctgccaccgagagcgag
ctgggcagtgacgggtggcgtttgtatgagtacatcacacgtcacttcatagccacggtc
agtcccgactgcaagtacttacagaccactatcgctttccaaattggcacagagggattc
tcctgtattggcaaaactcttatttctgcgggttttacagaggtgatgccgtggcagggt
attgctcttgaggaggctttgccgtcgtgtgagaaaggagacgtgtttacagtcgatgag
gttaaactgctggagaagcagacgtgcccacccgactacctcaccgaggctgagctcatc
acgctcatggagaaacatggcatcggcactgacgctagtatccctgttcacatcaacaac
atttgtcagaggaattacgtaaccgtggagaacggacgcaaactcaaacccaccaatctg
ggaatcgttctggttcacggctactacaagatcgatgcggagttggtgttgcccactatc
cgcagtgcagtggagaagcaactgaatcttattgcactgggcaaagcaaacttccaacag
gtactgcagcacacgctggacatctttaaaaggaagttccactactttgtcgattctatc
gctggtatggatgagttgatggaggtgtcattctcgcccatcgccgctacagggaagccg
ttctcacgctgcgggaagtgccatcgcttcatgaagtatattcaggccaagccgagccgt
ctgcactgttcacactgtgatgagacatacagtctgccccagaacggagcaattaaactc
tacaaggagctcaggtgtcctctggatgaattcgagctggtgctgtggacatcgggctcc
cgcggaaagagctaccctctgtgtccctactgcttctgcaaccctcccttcagagacatg
aaaaaaggtatggggtgtaacgagtgcactcacccttcctgtccacactcgctcaactcg
ctcggcattggtcagtgtgtggagtgcgagacaggcgtgctcgtctttgaccccaactcc
ggccctaagtggcgcatggcctgcaacaagtgcaccgtggtggtgcatttcttcgagcag
gctcacaaggtgcaggtgtctcaggagagctgcgatatatgcgaggcttccctggttatg
gtagacttccacaaagcacgctcgcccctagccgacggagagacgcaacacaccggctgt
gttttctgcgaccccattttccaggatctggtggagcttaagcatgcagccatgcgccat
cccatgcacagaggaggcggggctcgcagggggagggggagggggagggggagaagaccc
ggaggacggggcaaccctaaaaaaccgaaagacaaaatggctgccctggctgcgtacttt
gtataa
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