Clarias gariepinus (North African catfish): 128509099
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Entry
128509099 CDS
T10780
Symbol
smarca2
Name
(RefSeq) probable global transcription activator SNF2L2
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar03082
ATP-dependent chromatin remodeling
Brite
Transcription machinery [BR:
cgar03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
128509099 (smarca2)
Chromosome and associated proteins [BR:
cgar03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
128509099 (smarca2)
Chromatin remodeling factors
BAF complex
128509099 (smarca2)
PBAF complex
128509099 (smarca2)
GBAF(ncBAF) complex
128509099 (smarca2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
128509099
NCBI-ProteinID:
XP_053336641
LinkDB
All DBs
Position
21:19284041..19339002
Genome browser
AA seq
1582 aa
AA seq
DB search
MSTPTDPSVGMSHSGPSPGAGLSPGPILGPSPGPGPSPGSVHSMMGLSPGPPSIPHAMQS
QGSGDYPQESMHPMHKPMEGMHEKGMGEEMHYGQIKGVSMRSLHSGMGPPQSPMDQHSQG
YMSPHPSPMGSVPEHVSSPMSGGGPTPPQMSQAQSGPMIPMEAQAMGQQARGPSAFSSIQ
LQQLRAQILAYKILGRGQPLPENLQLAVQGKRSLPTMQQQQQQQQPVNTGPYNRPPGMSV
AHGSPVSGPCPTVGMQTHPPSTGPKPWAEGQGAEACSSSQKLPVQAPSGRPSPAPPQAPT
PAQAMPSTSLTPQSQSQPQAQQPQQQQGPGQTSLIIQLQQKQNRITPIQKPQGLDPVELL
QEREYRLQARIAHRIQELENLPGSLPPDLRTKATVELKALRLLNFQRQLRQDVVACMRRD
TTLETALNSKAYKRSKRQTLREARMTEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFK
EYHRSISGKIQKLSKAVATWHTNTEREQKKETERIEKERMRRLMAEDEEGYRKLIDQKKD
KRLAYLLQQTDEYVANLTTLVYEHKAAQAAKEKKKRKKKKKKEDGDAEGLGTIGPDGEPI
DESSQMSELPVKVIQTETGKVLQGTDAPKSSQLEAWLEMNPGYEVAPRSDSEESGSEFEE
EDEEEAVSRAESEEKKIIDPNSDEVSERAAKHIIESAKQDVDDEYSVQAGETSSQSYYGV
AHAVIERVEKQSSLLINGTLKQYQIQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALIT
YLMEYKRLNGPYLIIVPLSTLSNWVYELDKWAPSIVKIAYKGMPGMRRSLVPQLRSGKFN
VLITTYEYIIKDKQILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPL
QNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRP
FLLRRLKKEVESQLPEKVEYVIKCDMSAIQKVLYRHMQGKGILLTDGSEKDKKGKGGAKT
LMNTIMQLKKICNHPYMFQHIEESFAEHLGYPNGIINGPDLYRASGKFELLDRILPKLQA
THHRVLLFCQMTSLMTIMEDYFAYRNFLYLRLDGTTKAEDRAALLKKFNDEGSQYFIFLL
STRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKI
LAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQNEEEDEVPDDETLNQMIA
RREEEFELFMRMDLDRRREDARNPKRRPRLMEEDELPSWIIKDDAEVERLTCEEEKEKMF
PRGSRHRRDVDYSDTLTEKQWLRAIEDGNLEEMEEEIRLKKRKRKRYLDKGSRREDGDKA
KKRRGRPPAEKLSPNPPKLTKQMSAIIETVVNYRDGSGRQLSEVFVQLPSRKELPEYYEL
IRKPVDFKKIKERVRNHKYRSLGDLEKDVMLLCHNAQTYNLEGSQIFEDSIVLQSVFRSA
RQKIAKEESEDDSNDEDEEEESETESKSVKVKIRLSKREERSQERGKKRPSRVKAKPVVS
DDDSDEEQEENEQSEGSHTEDE
NT seq
4749 nt
NT seq
+upstream
nt +downstream
nt
atgtccactccaactgatccgtcagtcggaatgtcccactctggtccttcccctggtgct
ggcctttctcctgggcccattttaggccccagtcctggaccaggtccctctccaggctct
gtacacagcatgatgggcttgagcccaggacctcccagcataccacatgccatgcagagc
caggggtcaggagactatcctcaggagagtatgcatcctatgcacaagcccatggaagga
atgcatgagaaaggcatgggagaagaaatgcactatgggcagattaaaggtgtcagcatg
agatccctgcacagtggcatgggcccaccacagagtcctatggatcagcacagccaagga
tacatgtcacctcacccttccccgatgggctctgtgcctgagcatgtatcaagccctatg
tctggagggggtcctaccccacctcagatgtcccaggcacagtcaggccccatgattcct
atggaggctcaggcgatggggcagcaagcccgcggcccctctgccttcagctccattcaa
ctgcagcagctccgtgctcagatacttgcttacaagatcctgggtcgtggacagcctctg
cctgagaacctgcaactggctgtgcagggcaagaggagtcttcccacaatgcagcagcaa
caacagcagcagcaacctgtgaacactggaccttacaacaggcctccaggtatgtctgtg
gcccatggaagccctgtgtctggtccatgtcccactgtaggcatgcagacacaccctcca
agcaccgggccaaagccatgggcagaaggtcaaggtgctgaggcctgtagcagctcccag
aagctccctgtgcaagcccctagtggcaggccctctcctgctcctcctcaggctcccaca
cctgcccaggccatgcccagtacatctctcacaccacagtcccagtcacaaccccaagcc
caacagccccagcagcaacagggccctgggcagacctcgcttattatccagctccagcag
aagcagaaccgcatcacacccatccagaaacctcagggcctggacccagtggagcttctg
caggagcgggagtacagattacaggccaggattgctcatagaatccaagagctggagaat
ttgcctggttctttgcctcctgacctgagaactaaagcaacagttgagctgaaggcctta
agacttctcaatttccaacggcagctgcggcaggacgtcgtagcttgtatgcgcagagat
accactttggagacggcactgaattctaaggcctataagcgcagtaagaggcagaccctg
agagaggcacgcatgactgagaagctggaaaagcagcagaaaattgaacaggagagaaag
cggcgtcagaaacatcaggaataccttaacagcatcctccaacatgcgaaagacttcaag
gagtatcaccgctcgatctctggaaagatccagaagttgtctaaggccgtggccacatgg
cataccaacaccgagagagagcagaagaaagaaacagagagaattgagaaagagaggatg
agaaggcttatggcagaggatgaagagggctacaggaagctgattgaccaaaagaaggac
aagcgtctagcctacctgcttcagcagactgatgaatatgtagccaacctcacaaccctg
gtctatgaacacaaagctgcacaggctgctaaggaaaagaagaagaggaagaagaagaag
aagaaggaagatggagatgcagagggacttggaacaatcggacctgatggggagcccatt
gatgagagcagtcagatgagtgaactcccagtcaaggtcattcagacggagaccgggaag
gtgctacagggcacagatgcgcctaagtctagccaactggaggcgtggctggaaatgaat
cctggctatgaagtggccccgaggtcagacagtgaagagagcggttcggagtttgaagag
gaggatgaagaggaagcagtctcccgggcagagtcagaagaaaagaagattatcgatccc
aatagtgacgaagtgtctgagagagcagcaaagcacattattgagtctgctaagcaagat
gtggatgacgaatacagtgtccaggcgggtgagaccagttcacagtcttactatggagta
gctcatgccgtcattgagagggtggaaaagcagtcgtccttactgattaatggcacactc
aagcaataccagatccaggggctggagtggatggtgtccctgtacaacaataacctaaat
ggcattctggcagacgagatggggctgggcaagaccatccaaaccattgcactcatcaca
tacctaatggagtacaagagacttaatggtccctatctgatcattgtgcctttgtcaact
ctgtccaactgggtttatgaactcgacaagtgggcaccctccattgtgaaaatcgcttat
aagggcatgccaggaatgcggagatcactggtgcctcaacttcgtagcgggaagttcaat
gttctcatcaccacctatgagtacatcattaaggacaaacagattcttgctaagatccgc
tggaagtacatgattgtggacgaaggtcatcgtatgaaaaaccaccactgcaagcttaca
caggtgttgaacacacattacgtcgccccacgcagacttttgctgacaggaacccctctg
cagaacaaattgcctgagctttgggctctactcaactttctcttgcccacaatctttaaa
agttgcagcacctttgagcaatggtttaacgctccattcgccatgacaggggaaagggtt
gatctgaatgaagaagagaccatcctgatcatccgccgtcttcacaaagtcttgcgcccc
ttcttgctccgtagactaaagaaggaagtggagtctcagctgcctgaaaaggtggagtat
gtaatcaaatgtgacatgtcagccattcagaaagtactctataggcatatgcaaggcaag
ggcatcttgctcacagatggctcagagaaagacaagaagggtaaaggaggggcaaagact
ctgatgaacaccatcatgcagctgaagaagatctgcaaccacccttatatgttccagcac
atcgaggaatctttcgccgagcacttaggctacccaaatggcatcatcaatggtcctgat
ctgtaccgcgcttctggaaaatttgagctgctggaccgcatcctgcctaagctgcaggcc
acccatcacagagtgttgctcttctgtcagatgacttccctaatgaccatcatggaggat
tacttcgcctaccgcaacttcctctacctacgtctagatggaacaactaaggctgaagat
cgtgctgcactgctgaaaaagttcaatgatgagggctcacagtatttcatcttcctactg
agtaccagagcagggggtctgggccttaatctgcaggctgctgacactgttgttatcttt
gacagtgattggaacccccaccaggatttgcaagctcaggaccgtgctcacagaatcgga
cagcagaatgaggtgcgcgtgctgcgtctctgcaccgtcaacagcgtagaagagaagatc
ctcgccgccgccaaatataagctcaatgtcgatcagaaggtcatacaggctggcatgttc
gaccagaagtcctctagtcacgagcgcagggcttttctacaagccattctggaacacgaa
gagcagaatgaggaagaagacgaggttccagatgatgaaacgctaaatcaaatgattgcc
cgccgtgaggaggaatttgagcttttcatgcgcatggacctggatcggcgtcgtgaagat
gcccgtaaccctaagcgtaggcctcgactgatggaggaggacgagctcccatcctggatc
atcaaagacgatgccgaagtggaacggctcacctgtgaggaagagaaagagaagatgttc
ccccgtggatcacgccatcgcagggacgtggactacagtgacacgctgactgagaaacag
tggctgagagcgatcgaggatggcaacctggaggagatggaggaggagatccgcctgaag
aagcgcaagcgcaagagatacttggacaaaggcagccgacgtgaggacggggacaaagct
aaaaagaggagaggacgacctccagccgaaaagctctcccccaacccccccaaactcacc
aaacagatgagcgccatcatcgagacagttgtcaactacagagatggatcaggccgccag
ctcagtgaggtgtttgtacaactgccttccaggaaagagcttccagagtattatgaactg
ataagaaagccagtggactttaaaaaaataaaggagagagtgcgcaaccataagtaccgg
agcttgggcgatttggaaaaagacgtcatgctcctctgtcacaacgctcaaacctacaat
ctagaaggctctcagatctttgaagactctatagtgctgcagtccgtgttcaggagcgcc
aggcagaagattgccaaagaggagagtgaggacgacagcaatgacgaggatgaggaggag
gaatcagagactgagtctaagtcagtgaaggtaaagatcaggctgagcaagcgggaggaa
cgcagccaagaaaggggcaagaagcggccgagccgggtcaaggccaagcctgtggtcagt
gacgatgacagtgatgaggagcaggaggagaatgagcagtctgagggcagccacacagaa
gatgagtga
DBGET
integrated database retrieval system
