Clarias gariepinus (North African catfish): 128509340
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Entry
128509340 CDS
T10780
Symbol
cacna1ba
Name
(RefSeq) calcium channel, voltage-dependent, N type, alpha 1B subunit, a isoform X1
KO
K04849
voltage-dependent calcium channel N type alpha-1B
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar04010
MAPK signaling pathway
cgar04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
128509340 (cacna1ba)
04020 Calcium signaling pathway
128509340 (cacna1ba)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cgar04040
]
128509340 (cacna1ba)
Ion channels [BR:
cgar04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
128509340 (cacna1ba)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Ca_chan_IQ
GPHH
PKD_channel
Phage_TAC_15
Motif
Other DBs
NCBI-GeneID:
128509340
NCBI-ProteinID:
XP_053337009
LinkDB
All DBs
Position
21:complement(23064854..23221004)
Genome browser
AA seq
2279 aa
AA seq
DB search
MARFEDDLPVRYGGGSPSGAGRGPSRQQGPPGAHRIYKQTMAQRARTMAIYNPIPVKQNC
LTVNRSLFIFSEDNVIRKYAKRVTEWPPFEYMILATIIANCIVLALEQHLPAEDKTPMSE
RLDDTEPYFIGIFCFEAGIKIIALGFAFHKDSYLRNGWNVMDFVVVLTGILTTVGADFDL
RTLRAVRVLRPLKLVSGIPSLQVVLKSIMKAMVPLLQIGLLLFFAILMFAIIGLDFYMGK
FHRACFRDDTNEQVAEFPCGLDYPARTCENGTTCREYWPGPNFGITNFDNILFAVLTVFQ
CITMEGWVEILYNANDASGNIWNWLYFIPLIIIGSFFMLNLVLGVLSGEFAKERERVEKR
QEFLKLRRQQQIERELTGYLEWICKAEEVMLAEEDKNAEEKSPLDGAWYKRKCNNPVLKR
SKKSKNDLINAEEGEDHFTDISSVAPQGSPFARASVKSSKNESSSYLRRKEKRVRFFIRR
MVKSQGFYWTVLCLVGLNTLCVAIVHYDQPEWLTYALYLAEFVFLGLFLIEMSLKMYGLG
PRSYFHSSFNCFDFGVIVGSIFEVIWAAVKPGASFGISVLRALRLLRIFKVTKYWNSLRN
LVVSLLNSMKSIISLLFLLFLFIVVFALLGMQLFGGQFNFEDETPTTNFDTFPAAILTVF
QILTGEDWNAVMYHGIESQGGVGSGMFSSVYFIVLTLFGNYTLLNVFLAIAVDNLANAQE
LTKDEEEQEEAISKKLALQKAKEVKEVSPMSAASISLAANYVCSPAHHYLSQEQRRSLKM
MSVWEQRTTQIRKHMLASSEALYHEELNTRLSSSQHLRPDITTHLDRPLVVEPRCDWDKP
RDLRVEAGTPEDSNPQVPPDPLAMEPPQSQPPRKHHHRRRERTSNDAQENGETGASRHHV
HHSRSKETEGTRAKDGKSERSHSRDARGEHRHHRSHRAGREGNGVVSAKSERRSHHREGS
RSGRGDGERSSRGEEGGNGGNGGRRRHRQRAGKAQCGVEDGEQRENGEREEGKPPGHRQT
EMGGEMLPASSQQLVMGSRWGLDKPEDSDNQRNVSRTGGLGVHIPVTITSPPGETTLIAM
NSIDSETVPMTEKNLDEVNQSGPRPILPYSSMFIFSPTNPVRRLCHYIVNLRYFEMCILM
VIAMSSIALAAEDPVNANAVRNYVLKYLDYVFTGVFTFEMVIKMVDLGLLLHPGAYFRDL
WNILDFIVVSGALVAFAFTGTKGKDISTIKSLRVLRVLRPLKTIKRLPKLKAVFDCVVNS
LKNVLNILIVYILFMFIFAVIAVQLFKGKFFYCTDESKGLERDCRGQFLEYDKHEVSAQP
REWKKYDFHYDNVLWAFLTLFTVSTGEGWPTVLKHSVDATFEDQGPSPGYRIEISIFYVV
YFVVFPFFFVNIFVALIIITFQEQGDKALSECSLEKNERACIDFAINAKPLTRYMPQNQQ
SFQYRMWKFVVSPPFEYSIMIMIALNTVVLMMKYYDAPNAYEAMLKYLNIVFTALFSMEC
ILKIIAFGPLNYLKDAWNVFDFVTVLGSITDILVTEFNDRLLNLSFLRLFRAARLIKLLR
QGYTIRILLWTFVQSFKALPYVCLLIAMLFFIYAIIGMQVFGNIDLNEDTAINHHNNFQT
FLQALMLLFRSATGEAWHEIMLSCLSHRACDPNSGTPGNECGSDFAYFYFVSFIFLCSFL
MLNLFVAVIMDNFEYLTRDSSILGPHHLDEFIRVWAEYDPAACGRIKYRDMYEMLLHMCP
PLGLGKKCPPRIAYKRLVKMNMPIADDNTVHFTSTLMALIRTALEIKLASGIVAQRLCDA
ELKKELATVWPNLSQKTMDLLVTPHKPNELTVGKVYAALMIFDYYKQNRAKKIQMQQQQA
KEQPAPQNNVGALLEPILGPMQEKSRSMMECPSDFLPSIRPSSTTLNNGHTPHDNTIKGS
SSWASEKTKEVPRSRKRPILRGQSEDISNANTAQVSVEMRKMENSSSTVAPAGLEGYGRA
VSMPKLNAEMQRSHSRHSPGTLLAPIPDSPLRRSVSTFAPQRPPEVTLNDYILEKPAQDR
PHHHHHHHRCHHRRDREKKQRSLDRSPGGQPNNTGGTAADPAGNSMSRERGHDRGRSHER
KHHSSTAEKQRYYSCDRYGSREHFPAKPAPASCATSPGEAQETTFTKQGSGWAKGSPVLL
SSGSSTPSRGRRQLPQTPLTPRPAVAYRTANSSPVSSAGAQNTLPPPSPVMRISSEPYLR
PQTSLLSPQQIVTLPPLSQHSLLGMPNGFHFITGLTTGPGGSSDNVQRYYPEAEEEEWC
NT seq
6840 nt
NT seq
+upstream
nt +downstream
nt
atggcccgtttcgaagacgacctgccggtccggtatggaggcggctctccgtcgggtgcg
ggccgagggccgagccggcagcagggccccccgggcgcccacaggatctataagcagacc
atggctcagcgagcccgcaccatggccatctacaaccccatccctgtcaaacagaactgc
ctcaccgtcaaccgctctctcttcatcttcagcgaggataacgtgattcggaagtacgcc
aagagagtcacggagtggcctccatttgagtatatgatcctcgccaccatcatagccaac
tgtattgtcctggccttggagcagcatttacctgcagaagataaaaccccgatgtctgag
cgactggatgacacagagccctactttattggcatattttgctttgaggctgggattaag
atcatcgcgcttggctttgcgtttcataaagactcctacctccgtaacggctggaacgta
atggatttcgtcgtagtgctgacagggattctgactaccgttggggcagatttcgatttg
cggacgctcagggcagtacgagttctacggccgcttaagctggtgtctggaattcccagt
cttcaggtggttctgaagtccatcatgaaagccatggtgcctctgctgcagatcggcctg
cttctgttctttgccatcctcatgtttgccatcattggcctggacttctacatgggcaag
ttccaccgtgcttgcttcagagatgacaccaatgagcaggtggccgagttcccctgtgga
ctggattatccagcgcgcacatgtgaaaacggcaccacctgtcgagagtactggcccggc
cccaactttggcatcaccaactttgacaacatcctcttcgccgtgctcaccgtcttccaa
tgcatcaccatggagggctgggtggaaatcctttacaatgccaacgatgcctcagggaac
atctggaactggctgtacttcatccccctcatcatcatcggttccttcttcatgcttaac
ctggttctgggagtgctgtcaggagagttcgctaaggagcgcgagcgtgtggaaaagagg
caggagttcctaaagctgcgaagacagcagcagattgagcgagagctcaccggctacctg
gaatggatctgcaaagcagaggaagtcatgcttgctgaggaggacaaaaatgctgaggag
aagtctccactggatggggcctggtacaagaggaaatgcaacaacccagttctgaaaaga
tccaagaagagcaaaaacgacctcatcaatgcagaagaaggggaggatcatttcacggat
atctcatcagttgcaccccagggctcgccgtttgctcgggcaagcgtaaaaagcagcaag
aacgaaagctcctcgtatttacggcggaaagaaaaacgagtgcgcttcttcatacggcgc
atggtgaagtctcagggcttctactggaccgtgctgtgcctggtgggtctgaacacgctg
tgtgtggctatagtgcactacgaccagcccgagtggctcacctacgctctctatctggca
gagttcgtattcctgggccttttcctgattgagatgagtctgaagatgtacggcctcggc
cctcggagctacttccactcttccttcaactgtttcgactttggcgtgattgtagggagt
attttcgaggtgatatgggcggcagttaaacccggggcgtctttcggcatcagcgtgtta
cgagctctgcggctgctgaggatcttcaaggttacaaagtattggaactctttgaggaac
ctggtggtgtctctgctcaactctatgaagtctatcatcagcctgttgttcctcctgttt
ctcttcatcgtggtgttcgctctgctcggaatgcagctttttggggggcagttcaatttt
gaagacgagaccccaacaacaaattttgacacgttcccagcagcaattctgactgtgttc
cagattctgaccggagaggactggaatgcagtgatgtatcatgggatcgaatcccaagga
ggagttggcagtggcatgttctcctccgtctactttatcgtcctcacgctattcggaaac
tacactcttcttaatgtcttcctggctattgctgttgacaaccttgccaatgcacaggaa
ctcactaaggatgaagaggaacaagaggaggccatcagtaagaaactggcactccaaaag
gctaaagaggtgaaggaagtcagccccatgtcagctgctagcatttctctcgcagcgaat
tatgtctgctcccccgcccatcactacttgagccaagagcagaggcgctcactgaagatg
atgtccgtatgggagcagcgcactacacagatccgtaagcacatgttggccagcagcgag
gccctgtaccacgaggagctcaacacccgcctgagctccagccagcacctacgccctgac
atcaccacccacctggaccggccactggtggtggagccgcgatgcgactgggacaaaccc
agggacttgagagtcgaagcaggcacacctgaggactctaacccacaagtaccccctgac
ccccttgccatggagcctcctcaatcccagcccccacgtaaacaccatcatcggagacgc
gagcgaacttccaacgacgctcaagaaaatggcgaaacgggagcctcgcgccaccacgta
caccacagccgtagcaaagagactgagggaacacgggctaaagatggcaagagtgagcgc
agccatagccgcgatgctaggggagaacacaggcaccaccggtcacatagggcaggacgt
gagggcaatggcgtggtcagcgccaagagcgagagacgctcgcaccacagagaagggtca
cgttcgggaaggggggacggagagaggagctcacgaggggaggaagggggcaacgggggc
aacgggggcaggaggaggcaccggcagagggctggcaaggcacagtgcggggtagaggac
ggggagcagagggagaacggagagcgagaagagggcaagcctccaggacacagacaaact
gaaatgggtggagaaatgctgcctgcaagttctcagcagctcgtaatggggagccggtgg
ggtttggataaaccggaagattcggataaccagcgaaatgtgagccgcacaggaggcctg
ggggtccacatccccgtcaccatcacctctccacctggagagaccactctcatagccatg
aacagtatagacagcgagacagtgcccatgactgagaagaacctggacgaggtgaaccag
agcggtccacgccctatccttccttacagctccatgttcatcttcagcccgactaacccg
gtgaggcgtttgtgccactacatagtcaatctacgttactttgagatgtgtatcctgatg
gtcatagccatgagcagcattgcactggctgcagaagacccggttaacgccaacgctgtg
cgaaactatgtgctgaagtatttggactacgtcttcaccggggtgttcacatttgagatg
gtaattaagatggtggatttgggcttgttgctgcatccgggcgcgtacttcagagatttg
tggaatattctcgactttattgtggtcagtggagctctggtggcattcgcattcacaggg
accaaaggcaaagacatcagtaccatcaagtccctcagggtgttacgagtcctgcggccc
ctgaagaccatcaaacgcttgccgaaactcaaggccgtgttcgactgcgtggtgaactcc
ctgaagaacgtgctgaatatcctcatcgtctacatcctcttcatgttcatcttcgctgtc
atagctgtgcagcttttcaagggcaaattcttctactgcacagacgagtccaaaggactg
gaaagggactgcagagggcagtttttggagtatgataagcatgaggtctcggcccagccc
agggaatggaagaaatacgactttcactatgataacgtgctgtgggcctttcttacactc
ttcactgtgtccacaggagagggctggcctactgttctgaagcactccgtagacgccacc
ttcgaggaccagggtcccagtcctggctaccgcatcgagatatcaatcttctacgtagtc
tactttgtcgtcttccctttcttttttgtcaacatcttcgtggccttgattattatcacc
ttccaggagcagggggacaaagccttgtcggagtgtagtctggagaaaaatgagagagcg
tgtatcgactttgccatcaacgccaaaccgctgacacgctacatgccccagaaccagcag
tctttccagtaccggatgtggaagtttgtcgtttctccgccattcgagtactccatcatg
atcatgatcgccctcaataccgttgtcctcatgatgaagtactacgatgctccaaacgct
tatgaagcaatgctgaagtatctcaacatcgtctttactgcacttttttcgatggagtgc
attttgaagatcattgcttttggccctttaaactacctgaaggatgcatggaatgtgttt
gactttgtgacagtgctcgggagcattacggatatcctggtcactgagttcaatgaccgt
ctgttgaacctgagcttcctgaggctgttccgagccgcccgtcttattaagctccttcgg
cagggttacaccatccgcatcctgctttggactttcgtgcagtccttcaaggctctgcct
tatgtctgccttctgatcgctatgctgttcttcatttatgccattataggaatgcaggtc
ttcggaaacatcgatctgaatgaggacacggccatcaaccaccataacaacttccaaact
tttctgcaagctcttatgctgctcttcaggagcgctacgggagaagcctggcacgagatc
atgctgtcgtgtctgagtcaccgtgcgtgtgatcccaactccggcacgccgggaaacgag
tgcggcagcgacttcgcctacttttactttgtctccttcatcttcctttgctccttcctg
atgctgaacctctttgtggctgtaatcatggataattttgagtacctgactcgggactcc
tccatcctcggcccgcaccacctggatgagtttatccgcgtgtgggctgagtacgacccg
gcggcatgtggccgtatcaagtaccgcgatatgtatgagatgctgctccacatgtgccca
cctttaggtttgggaaagaaatgtccgccacgaatcgcctacaagcgtctggtgaagatg
aacatgcccatcgccgatgacaacaccgtccacttcacctctacgctcatggctctcatc
cggactgcgctggagatcaaactggcctcaggaatcgtggcccagcgtctgtgtgatgcc
gagctgaagaaggaactggcgactgtctggccaaacctgtctcagaagaccatggatctt
ctggtgactccacacaaacctaatgagctgacggttgggaaggtgtacgctgccctcatg
atcttcgattactacaaacagaacagagccaagaaaatccagatgcagcagcagcaggcc
aaagagcagccagcaccacagaacaatgtaggtgctctcctggagcccattctcggccct
atgcaggagaagagcaggagcatgatggaatgtccgtcagatttcctgccttccatcaga
cccagctctaccacactaaacaacggacacacaccccacgacaacaccattaaaggctcc
tcgtcttgggcttcagagaaaaccaaagaggtcccgaggtcaaggaaacgacccatcctg
aggggccagtcagaggacatctcaaacgcaaacactgcccaggtgtcagtagagatgagg
aaaatggagaacagttccagcacagtagctcctgctggtttagagggttatggacgagcg
gtatccatgcctaaactcaacgcagaaatgcagagaagtcattcacgtcactctccagga
accttactcgcacccattcctgactcccccttgagacgctcggtgtccacgtttgccccg
cagcgtcccccggaggttaccttaaacgattacattctggagaagcccgcacaagatcgg
ccacatcaccatcatcatcatcaccgctgccatcaccggagagacagagagaagaaacag
aggtcactggataggtcacctggtggacagcctaataacacgggaggcacggcagctgac
cctgcagggaactccatgagtcgagaaagagggcacgaccgaggccgttcccacgaaagg
aaacaccattcgtcaacagcggagaagcagcgttactactcgtgcgatcgctacggcagc
cgcgagcactttccggctaaacctgcgccagccagctgtgccacctcgcccggagaggct
caggagaccacctttaccaagcagggcagtggttgggctaaagggagcccggtgttgttg
agttcgggttcgagcacacccagccgcgggcgcaggcagctgccccagacgcccctgacc
cctcgcccagcggtggcctacaggactgccaactcctcccccgtgtcctctgcgggcgcc
cagaacaccctccctcccccgagtcccgtaatgcgcatcagctccgagccgtacctccgg
ccccagacctcgctgctgagcccgcagcagatcgtgaccctcccgccgctgtcccagcat
tccctgctcgggatgcccaacgggtttcacttcatcacgggcctgaccacggggcctggc
ggcagcagcgacaacgtccagcgctactaccccgaagcagaggaggaagaatggtgctag
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integrated database retrieval system
