Clarias gariepinus (North African catfish): 128509605
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Entry
128509605 CDS
T10780
Symbol
skic3
Name
(RefSeq) SKI3 subunit of superkiller complex protein
KO
K12600
superkiller protein 3
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
128509605 (skic3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgar03019
]
128509605 (skic3)
Messenger RNA biogenesis [BR:
cgar03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
128509605 (skic3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_19
TPR_14
TPR_8
TPR_17
TPR_16
TPR_11
TPR_12
TPR_CcmH_CycH
TPR_9
ANAPC3
HAT_PRP39_N
ChAPs
PknG_TPR
Fis1_TPR_C
ARM_TT21_C
ARM_TT21_N
T7SS_EccA1_N
TPR_21
TPR_COPA_B
TPR_15
Motif
Other DBs
NCBI-GeneID:
128509605
NCBI-ProteinID:
XP_053337370
LinkDB
All DBs
Position
21:complement(14734545..14760403)
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AA seq
1563 aa
AA seq
DB search
MSSKEVKSALKNARDAIKNKEFKEALKHCKAVLKLEKSNYNAWVFIGVAASELEQPEQAQ
TAYRKAAELEPEQLLAWQGLTNLYEKSDQADFKAELPKIYQKLITLYETSDKVKCFEVSK
KLVDIYQAEKNYLQVARVWRRLIQVKEEEDGIENFELIELWREMIRLLLSSVEQQDNETQ
QHLLSAFEKALQLTENVPSEDHKQLVHDYIKCLSKLPHEVKKMKEMCDVMLSLYPKDSYP
LEVLGQHFLMLDDCSEEAVRCFTHLLELDPVSSLGHFGLGKKALLEKKYEDAVNSFGLGL
KRMRSSVIGWYSLAQAELKMHRYSDSVLSSSQGLRVCAGFSKDWTQKLMRVKLEALVRAE
TEQSADEALQMLSQMPDASNDPALLVFKGRAYLQKGKLEEAFQVSSELLSSHPGSVDGLT
LKGLTHRAKNEYQQAEQCFTEAVSQRPDSGELYFLLGQLYWNMGEDTRQDKSKVHTHLLK
AAKLDPHLGSVFRYLGHYYREVAKDKGRAKGCYKKAFELNSRDAEAGAATVDLSMEQGDM
DSALAVLQGVTERATPGSAKWAWMRRGLYHLKVGEHAQAIADLQAALRADPQDWVCWECL
GEAYLNRHSFTAALKAFAKAHMLQPSSIYSLYQMASIKQILGRYREASVEYQQIIETEEY
VPALKGLGECLLALAKTAMEDYLDGRAVDLIQDAIKYLFRAVQKRADLSCLWKLLGDACT
KCSSVSPNRVCVLVPGPLCGADKNVRLDQKQLLSLGERCYGRALKLMAEAPSLWCDLGLN
YYHQSRLFLSTSTEQDIQPLLEKALQCVKKAVMLDSGNHVYWSALGVVAMTKGIENFALA
QHSFIKSIRAEPNNVVAWTNLGTLYLKKANIELAHEAFKIAQSLEPLYVNCWIGQAFIAE
TVGSYDTMDLFRHTTELSTHTEGVKGYAYWVCSTLLDKSNRDSELYRYNIVQMNAVSAAQ
VALTKYTERIQTDAEAFVMLGFLNEHMQLRKQATGAYKRAVELLQNCPQTEELSFALRGY
ARALCDTDQWEEAIRHYSSTSLEELHDLTGMALACFRAGRLQKSVTAYEKALAVASTEKE
KAYILTALALLQHRLGNMDTAKTLLFQCSVLKEPVPESLLCLCALGLVNGDATLASAALS
ELLKLDAAIRGTVDQHCLLTCTLLALQGNYSSVQREASRAVFRNPGNPSLWALLSRLVPQ
YCPNKADGGAVAGSVACHASMTLGKRALLCSGVNQLASGRHSGEDQRRNALKTIQRAVLL
CPDDPAGWAGLMAACHTENVACALSGSSPCREGLEKVFMTLVSEKVKSLNREDGLLAQAL
ESWVLQQTVTGLKQSGQYKNAEALCSQVLSVSPEHPAVFLLLRQVQCECLLLSGARDSIP
ATVLDQLNAAVMANSTSVSAWHWLAEVYRSQGLLAQASVALRQSLQLASQLGHYSGKLSS
LLRLALLSLTPCMVGVGGAEWSSLVREACTEVLKLGPCPVASLFQALLQFSIKMGARDTR
RLLEKIVYGSGSREMKTVTAVARWYLLRHLHAKDDLQLIDTLMMEAEAAGDFRLLEFHKQ
LYP
NT seq
4692 nt
NT seq
+upstream
nt +downstream
nt
atgtcaagcaaagaagtgaaatcagcgctaaagaatgccagggatgctatcaaaaacaag
gagtttaaagaagctctaaaacactgcaaggctgttttaaagcttgagaagagtaactac
aatgcctgggtatttatcggagttgcagcaagtgagctggagcagcctgagcaggcgcag
acggcctacaggaaagctgcagagctcgaacctgagcagctgcttgcgtggcagggcctc
acaaatctgtatgaaaaaagcgatcaagcagacttcaaagccgagctgcccaaaatctat
caaaaacttataacattgtacgaaacttcagataaggtcaaatgctttgaagtgagcaag
aagttggtggacatttatcaggctgaaaagaactatttacaggtggcgagagtgtggcgt
cgcctcattcaggtgaaagaggaagaggatggaattgagaactttgaactaattgaatta
tggagagaaatgattagactgctcctgtcctcagtggaacagcaggacaacgagacacag
caacatctgctgtctgcttttgaaaaagctcttcaactaactgaaaatgtgccgagtgag
gaccataaacaactcgtccatgattacattaaatgcctgtcaaaactccctcatgaagtg
aagaagatgaaggagatgtgtgatgtcatgctgtctctctacccaaaagactcttatcct
ctggaagttcttgggcagcattttttaatgttagatgactgcagtgaagaagctgtcagg
tgtttcactcatcttcttgagctggacccggtcagttctctgggccactttgggctgggt
aaaaaagctctcctggaaaagaaatatgaggatgctgtgaacagctttggtcttggactg
aaacggatgcgctccagtgttatcggctggtacagtctcgctcaggctgagctgaaaatg
cacagatactctgatagcgtattgtcctccagccaaggactgagggtgtgtgcagggttt
tctaaagattggacccaaaaactgatgagagtaaagctggaggcgctggtcagagcagaa
acggagcagagtgcagatgaagctctgcaaatgctttcgcagatgccagatgctagcaac
gatcctgctctgttagtgtttaaaggtagagcctatttacaaaaggggaagcttgaagaa
gccttccaggtgtcttctgagttgctgagctcgcaccctggctctgtggatggtttaacc
cttaaaggcctgacacacagagctaaaaacgaataccagcaagcagaacaatgctttaca
gaagctgtgtctcagaggccagacagcggagagttgtactttctgcttggacagctttac
tggaacatgggggaagatacacggcaggacaagagcaaagttcacactcatctgctgaag
gctgcaaagctggacccccaccttggctctgtgtttcggtaccttggacactactacagg
gaagtggccaaagacaagggccgagctaaaggctgctacaagaaagcctttgagctgaac
tccagggacgcggaggctggagctgccactgtagacctcagcatggagcaaggagacatg
gattctgctttagcagttcttcagggagtgacggagagagcaacgcctggttcagctaaa
tgggcctggatgagaagaggcctgtatcatctaaaagtgggcgaacatgctcaggcaatc
gcagatctgcaggcagcactgcgggctgatcctcaggactgggtgtgttgggagtgttta
ggtgaggcctacttgaaccgccacagctttacagctgctcttaaagcttttgctaaggcc
cacatgctgcagcccagctccatctacagcctgtaccagatggcctccatcaaacaaatt
ttgggcaggtacagagaggcttcagtggagtaccagcagataatagagacggaagagtat
gtgccagctctgaagggacttggagaatgtcttttggccctggctaaaacagccatggag
gactacctggatgggagagcagtagacctgatacaggacgccattaagtatttgttcagg
gcagtacagaagcgtgcagatctctcatgtctgtggaagttgctgggagatgcttgtacc
aaatgcagttctgtttctcctaaccgagtgtgtgtgctggtgcccggtccgctgtgtgga
gcagataagaatgtcagactggaccagaaacagctgctcagtctcggggagagatgttat
ggccgtgctctcaaactgatggccgaggccccgagtctgtggtgtgacctcggactcaac
tattaccaccagtcaaggctgttcctgtccacatctacagaacaggatatccagccactg
cttgagaaagctctgcagtgtgttaagaaggcagtcatgctggacagtgggaatcacgtg
tactggagtgctctgggggttgtggcaatgactaaaggaattgaaaacttcgcccttgca
caacacagtttcatcaaatcaattagagcagagccgaataatgttgtagcatggacaaac
cttggaactttgtatttaaagaaggccaacattgagcttgcacacgaggcctttaagatt
gcacaatctttggagccgctgtacgtgaactgttggattggacaggcatttattgctgag
accgtgggaagctatgacaccatggatctcttcagacacactactgagctcagcactcat
actgaaggagtgaagggttatgcgtactgggtctgttccactctactggacaagagtaac
cgagactcagagctgtaccgctataacatagtccagatgaacgccgtctcggctgcccag
gtggccttaaccaaatatacagagcggattcagacagatgctgaagcgtttgtgatgctg
ggcttcctgaacgaacacatgcagcttagaaagcaggcaactggagcctataagagagct
gtggagttgctccaaaactgtccacaaacagaagaactcagctttgctctcagaggctac
gctcgggccctctgtgacacagatcagtgggaagaggctatccgtcattattcctccacg
tcactggaggagctgcatgatctcacaggaatggctctagcctgctttagggcaggacgc
ttgcagaagagtgttaccgcctatgagaaagctcttgccgtggcctccactgagaaggag
aaagcttatattctaacagccctggctttacttcagcacagattagggaacatggacact
gccaaaactttgctctttcagtgctcggtgctgaaggagccagttccagagagtttactg
tgtctatgtgcattgggcctggtcaatggagatgccaccctggccagcgctgccctctca
gagctgttaaagctggatgcagctataaggggcactgtggatcagcactgcctgctcact
tgcaccctgctagctctacagggcaactacagctctgtgcagagagaagcttcaagggca
gtgttcagaaacccaggaaatccgtccctctgggcgctgctgtccagactggtgccacag
tactgtcccaacaaagctgatggaggagctgttgcaggtagtgtggcctgtcatgctagc
atgactctaggaaagagggcactgctgtgcagtggagtaaatcagttggcctcaggcaga
cactctggggaagaccagaggagaaatgctctaaagactatacagagagctgtgctgctc
tgtccagatgatcctgcagggtgggcggggcttatggctgcatgtcacacagagaacgtt
gcgtgcgccctgtcaggatcctccccatgcagagagggtctggagaaggtgtttatgaca
ctcgtatcagagaaagtaaaaagcctgaacagagaggatgggcttttggctcaggccctg
gaatcctgggtactgcagcagactgtgacgggactcaaacagagcggccagtataaaaac
gctgaagccttgtgttcacaggtgttgagtgtgtctcctgagcatcctgcagtgttccta
ttactcaggcaggttcagtgtgagtgtcttctcctgtctggtgccagagactctatcccc
gccacagtgctggaccagctgaatgctgctgtaatggccaattcaacctcggtgtctgct
tggcactggcttgcggaggtgtaccgctctcagggattgctggcacaggcatcggtggct
ctgagacagagcctgcagcttgcctctcagctcggtcactacagcgggaagctcagcagc
ctgctgcgacttgccttgctctctctcaccccctgcatggttggagttggaggagcggaa
tggagcagtcttgttcgtgaagcctgtactgaagtcctgaagttgggtccgtgtcctgtt
gcctcactttttcaggccctgcttcagttctccattaagatgggagccagggatacacgg
cgtctgctggagaagattgtttatggatcgggttcaagagagatgaaaacggtgacggca
gtggctcgctggtatctcctgcgccatctgcatgccaaagacgacctgcagcttatagat
accctgatgatggaggctgaagcagcaggagacttcaggctgcttgagtttcataaacag
ctctacccctga
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integrated database retrieval system
