Clarias gariepinus (North African catfish): 128509729
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Entry
128509729 CDS
T10780
Symbol
pole
Name
(RefSeq) DNA polymerase epsilon catalytic subunit A
KO
K02324
DNA polymerase epsilon subunit 1 [EC:
2.7.7.7
]
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar03030
DNA replication
cgar03410
Base excision repair
cgar03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
128509729 (pole)
03410 Base excision repair
128509729 (pole)
03420 Nucleotide excision repair
128509729 (pole)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cgar03032
]
128509729 (pole)
03400 DNA repair and recombination proteins [BR:
cgar03400
]
128509729 (pole)
Enzymes [BR:
cgar01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
128509729 (pole)
DNA replication proteins [BR:
cgar03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase epsilon complex
128509729 (pole)
DNA repair and recombination proteins [BR:
cgar03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase epsilon complex
128509729 (pole)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF1744
POL2_thumb
DNA_pol_B_exo1
zf_DPOE_2
zf-DPOE
DNA_pol_B
DNA_pol_B_exo2
RNase_H_2
CENP-B_dimeris
Sigma70_ner
Pox_Ag35
Motif
Other DBs
NCBI-GeneID:
128509729
NCBI-ProteinID:
XP_053337539
LinkDB
All DBs
Position
21:complement(24097574..24126941)
Genome browser
AA seq
2286 aa
AA seq
DB search
MVLQNSGRYKADWGGGADQDKQQDDASNLSAVKRLERSQFTDEMDARYGFERMKEPGEKT
GWLINMHPTEILDDDKRMISAVDYYFIQEDGSRFKVALPYKPYFYVATKKNCEREVVSFL
SKKFQGKIAKLETVPKEDLDLHNHLVGLKRNYIKLSFNTVDDLIKVKREISPAVKKNRER
ENSNDAYTSMLSSALVGGSVMTADEDGTSKKMAEQLDNIVDMREYDVPYHVRLSIDLKIH
VAHWYNVRYRGSAYPPEILRRDDLVERPDPVVLAFDIETTKLPLKFPDAETDQIMMISYM
IDGQGFLITNREIVSEDIEDFEFTPKPEYEGPFTVFNEPDEAALIQRWFEHIHETKPNIF
VTYNGDFFDWPFVETRAAHHNLNMHQEIGFQKDSQGEYKASQSIHMDCLRWVKRDSYLPV
GSHNLKAAAKAKLGYDPVELDPEEMCRMATEEPQTLATYSVSDAVATYYLYMKYVHPFIF
ALCTIIPMEPDEVLRKGSGTLCEALLMVQAFHVNIVFPNKQEQVFNKLTDDGHVLDSETY
VGGHVEALESGVFRSDIPCRFKMNPAAFDFLLQRVERTMRHAVEEEEQIPLEQVTNFNEV
CDDIKKKLISLKEVPNRIECPLIYHLDVGAMYPNIILTNRLQPSAMVDEATCAACDFNKP
GATCQRRMAWQWRGEIMPASRSEFHRIQQQLESEKFPPLFPNGKPRAFHELNREEQARHE
KKRLGDYCRKAYKKVHLTRLEERVTTICQRENSFYVDTVRAFRDRRYEFKGLHKVWKKKL
SVAQEKGDAAEVKRCKNMEILYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGIVCHTG
ANIITQARELIEQIGRPLELDTDGIWCVLPNSFPENFVIKSSNEKKPKVTISYPGAMLNI
LVKAGFTNDQYQELVDPASLTYETRSENSIFFEVDGPYLAMILPASKEEGKKLKKRYAVF
NEDGSLAELKGFEVKRRGELQLIKIFQSSVFEAFLKGTTLEEVYASVAKVADYWLDVLYS
KAANMPDAELFELISENRSMSRKLEDYGEQKSTSISTAKRLAEFLGDQMVKDAGLSCRYV
ISRKPEGSPVTERAIPLAIFQAEPSVKKHFLRKWLKMPSLHDMDIRSILDWSYYIERLGS
AIQKIITIPAALQQVKNPVPRVRHPDWLHKKLLEKNDIYKQKKISEMFTSEGKRQVNNQA
EPGKTPDMEDFGAPQRPLQPAILISTKRKRSSQAEDSQTESQELELTQSWREILGPPPPM
GTTQEERLVWLRYHKKKWELQIRQRKERRKRRRMLDGESHPTGGGVIRDGPSTGLGSFLR
RTARSILDMPWQIVQIAETSHPGLYKLWAVIGTDLHCMKLNIPRVFYVNQKVPKQEEGAN
YKKVNRILPRSNVVYYLYQYSVPEDMYQEHINEINADLSAPDIEGVYETQVPLLFRALVQ
LGCVAMVNKQVVRALAGREADTFDLEHLEMRSLAQFSYLEPGSVRHIYLYHHGQGHKALF
GLFIPSQRKASVFVLDTVRSNQMPNLSTLYGVERTALLEKTSEELLPPEKHLFEVRAEND
VKAIYRAVQRILLSYKEERRGPTLIAVQSNWELRRLAAGLTVLEEFPVVPVHVTDDISYS
VLDWQRHGARRMIKHYLNLDSCLSQAFDMARYYHLPVGNLPEDISIFGSDLFLARHLRKH
NHILWLSPTARPDLGGKEADDSRLVMESDERGSVEINAPGCFSTVCVELDIQSLAVNTIL
QSQHVNDMEGGASMGVSFDVIQHASLEDMMSGNHGAPAVASYDETALCSNTFRILKSMVV
GWVREITQYHNVYADNQVMHFYRWLRSPSSLLYDPALHRTLLNMMKKIFLQLVAEFKRLG
SSVVYGNFNRIILSTKKRRIDDAIAYVEYITKSIHSREIFHSLSITFSRCWEFLLWMDPA
NYGGVKGKVPSSIMYGETDTDKKKKRKKEGEDEGSEDEEEEEDEQEEERDGDEDEVEDLI
ESSWNIMHYLPQAASCQKYFLMIISAYIAAVYHSMREELRRNAPGATPIKRRGGSQASQQ
PAGDVSALPGMITFSQEYVSSELTQNIFTITQKIQKKVCGTRSVAQPSEMFPVLPGSHLP
LNNPALEFIKYVCQVLSLDANIVNQVNKLKRDLLRLVDVGEFSEDAQFRDPCNSYILPEV
ICHQCNYCRDLDLCKDPSVAQDGSVLPQWFCSNCQAQYDTDAIEMALVEALQKKLMSYTL
QDLECAKCKGVKEANMPLYCSCAGDFKLSFSTKSFTEQVDVFRSIAAHYNMNFLLETIDW
ILRMNS
NT seq
6861 nt
NT seq
+upstream
nt +downstream
nt
atggttttgcagaacagcgggagatataaagcggactggggtggaggagcagatcaggac
aaacagcaggatgacgcgtctaatttgtccgccgtcaagcggcttgagcgcagtcagttc
acagacgagatggacgcccgctacggcttcgagcgcatgaaggagccgggagagaaaaca
ggctggttgatcaacatgcacccgacggagattctggatgatgataagaggatgatcagt
gcagtggattattatttcattcaggaggacggcagcaggtttaaggttgcactgccatat
aagccgtacttctacgtagcgacaaagaagaactgtgagagagaagtcgtctccttttta
tcaaagaagttccagggaaagattgcgaagctagagaccgttcccaaggaggaccttgac
ctgcacaaccacctggtgggcctgaagaggaactacatcaaactgtcctttaacacggtg
gacgatctgatcaaggtgaagcgtgagatctcccctgctgtgaagaagaacagagagagg
gagaactctaacgacgcctacaccagcatgctgtccagtgctcttgtgggtgggagcgtc
atgactgctgacgaagacggcacgtctaagaaaatggccgagcagctggacaacatcgtg
gacatgagagagtacgacgtgccttaccacgtcagactgtccatcgacctaaagatccac
gtggctcactggtataacgtgcggtaccgaggaagcgcttatcccccggagatcctgcgt
cgggatgacctggtggaaagaccagatcctgtcgtcttggcgttcgatatcgagaccact
aaactccctctaaagttccccgacgcagaaactgaccagatcatgatgatctcgtacatg
atcgacggacagggtttccttatcactaacagagagatcgtctcggaggacatcgaggat
tttgagttcacccccaagccggagtacgagggccctttcaccgtgtttaacgagcctgac
gaggctgctcttattcagagatggttcgagcacatccatgagaccaaacccaacattttt
gtcacctataacggggactttttcgactggccgtttgtagagacgcgtgcggctcatcac
aacctcaacatgcatcaagagatcgggtttcagaaggacagccagggagagtacaaggcc
agccagtctattcacatggactgcctcagatgggtgaagagagacagctacctgcctgtc
gggagccacaacctgaaagcagcagcgaaggccaagctgggttacgaccccgtggagttg
gacccggaagagatgtgccgcatggccaccgaggagccacagactttggccacgtactcg
gtgtccgacgccgtggctacctactatctctacatgaaatacgtccatccctttatcttc
gccctgtgcaccatcattcccatggagcctgacgaggtgttgcgtaaaggttccgggacg
ctgtgcgaggcgttgttgatggtccaggctttccacgtcaatatcgttttcccgaacaag
caggagcaggtgttcaataagctcacagacgacggtcatgtcctggactcggagacctac
gtgggcggacacgtcgaggctctggagtcgggggtgttccgcagtgacatcccgtgccgc
tttaaaatgaatccggcggcgttcgacttcctgcttcagagggtggagcggacgatgcgt
catgccgtcgaggaagaggagcagattcctctggagcaagtcacaaactttaatgaggtt
tgtgatgacatcaagaagaagctgatctctttgaaggaagttccgaacaggatcgagtgt
cctcttatttaccatctcgacgtgggcgccatgtaccccaacatcatcctcaccaacaga
ctgcagccgtctgccatggtggatgaggcgacctgtgccgcttgtgactttaataaacct
ggagcgacctgccaaagaaggatggcctggcagtggagaggagagatcatgccagccagt
cgtagcgagttccaccgtattcagcagcagttggagtctgagaaattcccgcctctgttt
cctaacggaaaaccccgtgcctttcacgagcttaacagagaggaacaggctcggcacgaa
aagaaacgtctgggagattactgtcgaaaggcgtataagaaggtccacttgacgaggctg
gaggagagagtcactacgatatgtcagagagagaattccttctacgtggacacggttcga
gcgttcagagatcgccgctacgagtttaaaggcctgcataaggtgtggaagaagaagctt
tctgtggctcaggagaaaggcgacgctgcggaagtgaagcgctgtaaaaacatggagatt
ctttatgattctctgcagctcgcccataaatgcatccttaactccttctacggatacgtc
atgagaaaaggagcgaggtggtattccatggaaatggcagggattgtttgtcacacaggg
gcgaatatcatcacacaggccagagagctgattgaacagatagggagacctttagaactg
gacactgatgggatctggtgtgtcctgccgaactccttccctgagaacttcgtaatcaaa
tctagtaacgagaagaagcccaaagtgaccatcagttaccccggagccatgctgaacatc
ctggtcaaggcaggctttaccaacgatcagtaccaggagctggtggacccggcctcgctc
acctatgagacgaggtcggagaacagcatcttctttgaggtggacggaccatacctggcc
atgatcctgccagcgtctaaagaggagggcaagaagctgaagaaaagatatgccgtgttc
aacgaggacggctctctggctgagctgaagggtttcgaggtgaagaggagaggagagctc
cagctcattaagatcttccagtcgtccgtgttcgaggctttcctcaaaggcaccactctg
gaggaagtctacgcctcggtcgccaaagtggccgactactggctggatgtgctgtacagc
aaggcagccaacatgccagacgcggagctcttcgagttgatctcggaaaaccgctccatg
tcccggaagcttgaagactacggcgagcagaagtccacgtccatcagcacggccaaacgt
ctggcggagtttctcggcgatcagatggtgaaggacgcagggctgagctgtcgctacgtc
atctctcgcaaaccagagggctcacctgttactgagagggcgattcctctggccatattc
caagctgaacccagcgttaagaagcactttctgcgcaaatggctgaagatgcccagcctc
cacgacatggacatcagatccatcctggactggagttactacattgagaggttgggcagt
gccattcagaagatcatcaccattccagcagcactacagcaggtgaaaaacccagtgccg
cgagtgcgccatccagactggctgcataaaaagcttctggaaaagaacgacatctacaaa
caaaagaagatcagcgagatgttcaccagtgaaggaaagagacaggtgaataatcaggca
gaaccaggtaagactcctgatatggaggatttcggtgctccacagcgccccctgcagcct
gccatcctcattagcaccaagaggaagcggtcgtctcaggctgaggacagccagaccgag
tctcaggagctggagctcacgcagtcctggagagagatcctgggtcctccgccacctatg
ggtacaacacaggaggaaaggctggtgtggctgcgctaccataagaagaagtgggagctg
cagatccggcagaggaaagagcgcaggaagaggcgtcgcatgctggacggagagtctcat
ccaaccggaggcggagtgatcagggacgggccaagcacagggctggggagcttcctccgc
aggacggccaggagcattctggacatgccgtggcaaatagtacagattgctgaaaccagt
cacccgggcctgtataagctgtgggcggtgatcggcactgacctgcactgcatgaagctg
aatatcccgcgtgtgttttatgtcaatcaaaaagtccccaaacaggaagagggggccaac
tacaaaaaggtgaacaggattttgccacgctccaacgtggtgtattacctgtaccagtac
tccgtgcccgaggacatgtatcaggaacacatcaacgagatcaatgccgacctttctgcc
ccagacatagagggcgtctacgagacgcaggtgccgctgctgttccgtgcgctggtgcag
ctcggctgcgtggctatggtcaacaagcaggtggtgagagcgctggctggccgggaagcc
gacaccttcgacctggagcacctggagatgcgatcgctggctcagttcagctacctggag
ccaggtagcgtgagacatatctacctgtaccatcacggtcagggccacaaggctctgttt
gggctcttcatcccgtcccagcgcaaagccagcgtcttcgtcctcgacacggttcggagt
aatcagatgcccaacttgagtactctgtacggcgtggagcgaactgcgctgttggagaag
acctcagaggagctcctgcctccagagaagcacctgttcgaagtgcgcgccgagaacgac
gtgaaggctatctaccgcgctgtgcagcgcattctgctcagctataaggaggagcgtcgt
ggtcccactctcatcgccgtccagtctaactgggagctacggcgtctggcggccggcttg
accgttctagaggaatttcccgtggttcctgtgcacgtgacggatgacatcagctacagc
gtgctggactggcagcggcacggcgcccgccgcatgatcaaacactacttaaacctggac
agctgtctttcacaggccttcgacatggccaggtattaccaccttcccgtagggaaccta
cccgaggacatctccatatttggctcggacctctttctggcccgtcacttgcgtaaacac
aaccacatactgtggctttctccgacggcgagacccgacctcgggggcaaagaggcagac
gacagccggctggtgatggagagcgacgagcggggctcggtggagatcaacgctccggga
tgcttctccacagtgtgcgtggagttggacattcagagcctggcggtgaacaccatcctc
caatcgcagcacgtgaacgacatggagggcggagccagcatgggcgtgagtttcgatgtc
attcagcacgcgtcactggaggacatgatgtccggtaaccatggggcgcccgccgtggct
agttacgacgagacggcgctctgctccaacacgttcaggatcctgaagagcatggtggtc
ggctgggtgagggagatcactcagtaccataacgtgtacgcggataatcaggtgatgcac
ttctaccgctggctgcgctcccccagctcgctcctgtacgacccggcgctgcaccgcacg
ctgctcaacatgatgaagaagatttttctccagctggttgctgagttcaagcgcctcggt
tcctctgtggtctacgggaacttcaaccgtatcatcctgagtacgaagaaacggcgcatc
gatgacgccatcgcctacgtggagtacatcaccaaaagcatccattcccgggagatcttc
cactctctgtccatcaccttttccagatgttgggagtttctgctgtggatggatccagcg
aactacggaggagtgaaaggcaaagtgccctccagcataatgtacggagagactgataca
gacaagaaaaagaagcgaaagaaggaaggagaggatgagggcagcgaggatgaggaggag
gaggaggatgagcaagaggaagagcgagatggagatgaggatgaggtggaggatctgatt
gagagcagctggaacatcatgcattacctgcctcaggctgcgtcatgtcagaagtacttc
ctcatgatcatttcagcgtacatcgccgcagtgtatcacagcatgagggaggagctccgg
agaaacgctcccggagccacgcccataaagaggcggggcggaagccaagcgtctcagcag
cccgctggtgacgtcagcgcgcttcctgggatgatcaccttctctcaggagtacgtgtcg
agcgagctcacgcagaacatcttcaccatcacgcagaagatccaaaaaaaggtgtgcggc
acacgcagcgtggcccagccctcggaaatgttccccgtgctcccggggtcacatctgccc
ctcaacaaccccgcgctggagttcatcaaatatgtctgtcaggtcctctcgctggacgcc
aacatcgtgaaccaggtgaataagctgaagcgggatctcctgcgcttggtggacgttggg
gagttttccgaggacgctcagttccgagacccgtgcaactcctacatcctgcccgaggtc
atctgccaccagtgcaactattgtcgcgacctcgacctctgcaaggacccttccgtagcc
caggacggctcggtattgccgcagtggttctgctctaactgccaggcgcagtacgacacc
gacgccatagagatggcgctagtggaggctctgcagaagaagctgatgagttacacgctg
caggacctggagtgcgctaaatgcaaaggggtgaaggaagccaacatgcctctgtactgc
agctgcgcaggagacttcaagctctccttcagcacaaagagcttcacagagcaggtcgac
gtgttcaggagcatcgctgcacattacaacatgaacttcctgctggagaccatcgactgg
atcctgaggatgaacagctag
DBGET
integrated database retrieval system
