Clarias gariepinus (North African catfish): 128509778
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Entry
128509778 CDS
T10780
Symbol
tmc1
Name
(RefSeq) LOW QUALITY PROTEIN: transmembrane channel-like protein 1
KO
K21988
transmembrane channel-like protein
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
128509778 (tmc1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
cgar02000
]
128509778 (tmc1)
03037 Cilium and associated proteins [BR:
cgar03037
]
128509778 (tmc1)
Transporters [BR:
cgar02000
]
Other transporters
Pores ion channels [TC:
1
]
128509778 (tmc1)
Cilium and associated proteins [BR:
cgar03037
]
Other cilia and associated proteins
Stereociliary proteins
128509778 (tmc1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TMC
Sm_multidrug_ex
Motif
Other DBs
NCBI-GeneID:
128509778
NCBI-ProteinID:
XP_053337590
LinkDB
All DBs
Position
21:9831101..9847300
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AA seq
916 aa
AA seq
DB search
MRTYIYTPESIFLNFLEQTDIDTGTXVPEATMPTEKLITFESDVDKSDSIYYVQIDVDGK
RQREEMVKKNQEKKSKMDKGHVQRPRRKSNYFHNTKSNGIKKAGEEVEVKEFLKERNCNA
NKKTKKQQGVTEKEEEEKNLEMKQKNNLGKMKKGRKWPKDSISDTSSSSDEELLVDSLSE
EEMEKLIKAINERKKLIATLKAQPWPMKKKLSTLRKSQAFIEKYEGILGKTNRRRFYTCK
AMMTKKWMKFQRHFNNFKMACIPWEMKIKEIESHFGSAVASYFILLRWMFGINIILFCLS
FGLVMFPEALMGLPYGSIPRKTIPREEQAIASNLDIIWDIEGYLKYSIMFYGYYNNQRTI
GWLRYRMPLCYFLVGVAGMAYNFMVVIKTMARNTSEDSGEDDNNFNYSWKIFTSWDYLVG
NPDTANSKFAYIATTFKEALCEEKLGKKDESIRMKVFIRVTANILVLFILGGSGYLIYFV
VHRSEKFIYDGMNHFSWWERNEVNIVMSLLTTFIPMLFDAIGIWEDYHPRITLRLQLARV
FTLYVGNLYSFIIAIIDQISISRGQEEAMKLNLTIWEANMHNRSIAQNSTGGPIRVDPAD
VPRGPCWETMVGQEFVRMLLSDTVTTYVVILINDFARAVIIRCINHCWCWDLEYTFPCYS
LFDVSGNVLTLIFNQGMTCMGTFYAPCLPALNLIRLQTSMYLQSWGVMCCNMPHPRIFKA
SRSSNSYMSLQLLILFVSTLPTIFTIVALRPSFDCGPFSGKDRIYDVIPESLQMDLPKWL
ATAFSYLSNPGLVVPFLLFLILTIYYLYATSKSFKRANTDLKTKLRIQREENRNWNKHVA
RKTAEQTQEDKQSNNNASIKDTRKSSGQSSYLSPPPHFYNGDQCSDLKLSPRSPYVQTSA
PQSHLIHGQLPGFPPY
NT seq
2751 nt
NT seq
+upstream
nt +downstream
nt
atgcgcacatacatatacacgcctgaaagcatctttcttaattttcttgagcagaccgac
atagacacaggtacataggtaccagaggccacgatgccaacggagaagctcatcacattc
gagagtgacgtggataaaagtgacagcatttactatgttcaaattgacgtggatggaaaa
agacagcgagaagagatggtcaaaaagaatcaagaaaaaaaaagtaaaatggacaaggga
catgtgcagaggccacggagaaaatccaattattttcacaataccaaaagcaacgggata
aaaaaagcaggagaggaggtagaggtaaaggagtttctcaaggaaagaaattgcaatgcg
aacaagaagaccaagaaacagcagggggtaacagaaaaagaagaggaggagaagaacctg
gaaatgaagcaaaaaaacaatctagggaagatgaaaaagggaaggaaatggccaaaggac
agcatctctgacacgagctcttcatcagatgaagagttgttggtagactctctgagtgaa
gaggaaatggagaaactcataaaagccataaatgagaggaagaagctcatcgccacactg
aaagcacaaccttggccaatgaagaagaaactgtctacgctcaggaagtcccaagccttt
atagaaaagtatgaaggcattttaggaaaaaccaacaggaggagattctacacttgcaaa
gccatgatgacgaagaaatggatgaagtttcagagacactttaataactttaagatggcc
tgcattccatgggagatgaagatcaaggaaattgaaagtcattttggttcagcagtagct
tcatatttcatattgctccgatggatgtttggcatcaacatcattctcttttgcttgtcc
tttgggcttgttatgtttcctgaggccttaatggggctgccatatgggagtattcccagg
aaaacgatccccagagaggaacaagccattgcttcaaacttagatatcatatgggacatt
gagggttaccttaagtattctataatgttttatggctactacaacaaccaaagaacaatc
ggttggctcaggtaccgaatgcccctgtgctacttcctggttggggtggccggcatggct
tacaatttcatggtggtcattaaaaccatggcacgtaacaccagtgaagacagcggagag
gatgataacaacttcaattacagctggaaaatattcaccagttgggattacctagttgga
aacccagacacagccaacagcaagtttgcctacattgccacaacttttaaggaagcactt
tgtgaggagaagcttggcaaaaaagatgaaagcatccgcatgaaagtgttcatccgtgtc
acggccaatatcctggttcttttcatcctgggtggaagtgggtatctaatctattttgta
gtgcacagatctgaaaagtttatctatgatgggatgaaccatttcagctggtgggagaga
aatgaagtgaacatagtgatgtctctgttaaccacattcattccgatgttgtttgacgca
ataggcatttgggaggattatcacccgcgcattaccctgcgcctgcagctggcccgtgtc
tttaccctttacgtaggcaacctctacagcttcatcatagccatcattgaccagatcagc
atcagtaggggtcaagaagaagcaatgaaattaaatctgaccatatgggaggctaacatg
cataacaggtccatagcgcagaattcaactggtggtcctatcagagtggatcctgcagat
gtacccagagggccttgctgggagactatggtgggacaggagtttgtacgtatgctgctt
tcagacacagtaactacttacgtagtcattctgatcaacgactttgcccgagcagtcatt
attcgttgtatcaaccactgctggtgctgggacttggagtacacctttccatgctattcc
ttgttcgatgtgagtgggaatgtgctcactctcatatttaaccaggggatgacttgcatg
gggacattttatgccccgtgcctccccgcgctcaacctcatccgactgcaaacgtccatg
tatttacaatcctggggtgtcatgtgctgcaacatgcctcatcctcgcatctttaaggcc
tcacgttctagcaactcctacatgtccctacagctgctcatcctcttcgtctccacactg
cccaccatattcaccatcgtcgctttgcggccatccttcgactgcgggcctttcagtggg
aaagaccgcatatacgacgtgatcccagagtctctgcagatggatttgccaaaatggtta
gcaacggcgttcagctatctctcaaacccaggactggtcgtgcctttcctattgttcctg
atcctcacaatctattacctatacgccacatctaaatcattcaagcgggccaacactgat
ctaaaaaccaaactgcggattcaaagagaggagaatagaaactggaacaaacatgtagca
aggaagacagctgaacagacacaagaggacaagcagagcaacaataatgcctctataaaa
gacaccaggaaaagcagtggccagagttcttatctttctcctcctccacatttttacaat
ggagatcagtgttctgacctgaaactctccccccgatctccttatgttcaaacctcagca
cctcagtctcatctcatacacgggcaactaccaggatttccaccatattaa
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