Clarias gariepinus (North African catfish): 128510181
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Entry
128510181 CDS
T10780
Symbol
hbs1l
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
128510181 (hbs1l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgar03019
]
128510181 (hbs1l)
Messenger RNA biogenesis [BR:
cgar03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
128510181 (hbs1l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
HBS1_N
GTP_EFTU_D2
MMR_HSR1
AAA_22
DO-GTPase2
FliD_N
Motif
Other DBs
NCBI-GeneID:
128510181
NCBI-ProteinID:
XP_053338249
LinkDB
All DBs
Position
22:5181485..5239877
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AA seq
673 aa
AA seq
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MSRHRNVRGYNYDEDFEDDDIYGHSVDDDYCISPATAAQFIYSRQDSRQRQVEPLEEEEE
HEEEVEMPTSPMVTQMLDPMTQGKLYSCLDQMRTVLGDSVPDSTLSEAAMKYDCDPQRAL
DSILSAESSSKQTTAPKTCPPSQKAKPRELPETRLESEVLPKVARMTVSGKKQTMGFDVP
SSEENGVTPSVRTGPSPDVTAPAAPETPSKAACATEDPATPAPPRSTSKSKQQRNIRTEL
EQRQGGKPLLNLVVIGHVDAGKSTLMGHLLYLLGNVNKRTMHKYEQEAKKAGKASFAYAW
VLDETGEERDRGVTMDVGMTKFETGSKVVTLMDAPGHKDFIPNMITGAAQADVAVLVVDA
SRGEFEAGFEAGGQTREHALLVRSLGVTQLAIAVNKMDQVNWQQSRFQEITSKLGQFLKQ
AGFKDSDVYYVPTSGLSGQNLTTRSTEAALSAWYKGPSLLEQIDSFKAPQRSVEKPFRLC
VSDVFKDQGSGFCVSGKIEAGFVQTGDRVLAMPPNETCTVKGISLHDEALDWAAAGDHVS
LTVTGMDIIKINVGCVFCDPKEPIRACTRFRARILLFNIEFPVTQGIPVLLHYQTVSEPA
TIRKLVSVLHKTSGEVLKKKPKCLGKGQNAVVEIQTQRPVALELYKDYKELGRFMLRYVG
STIAAGVVTEIKE
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgccacaggaatgttcgagggtataattacgatgaagattttgaggatgacgac
atttatggacactcggtggatgatgactactgcatctcacccgctacggctgctcagttc
atttactcgcggcaggactcgaggcagcggcaggtagagccgctggaggaggaggaggaa
cacgaggaagaggtggagatgccgacctcgcccatggtcacgcagatgctcgacccgatg
acacaaggtaagctctactcctgtttggaccagatgaggacggtgctgggcgactcagtc
cccgactccacactgagcgaggcggcgatgaagtacgactgcgatccccagcgagctctc
gactccatcctgtctgcagaaagtagcagcaagcagacgaccgcgcccaaaacctgccct
ccatcacagaaagccaaaccccgtgagcttcccgagacccgtctcgaatccgaagtgctt
ccgaaagtggcccggatgaccgtctctggaaagaagcagaccatgggcttcgacgtgcca
agctcagaggagaatggagtcaccccgtccgtacgcacaggtccgagcccagacgtgacg
gcgccagcagctccggagactccgtctaaagcggcgtgtgcgaccgaggacccggcaacc
ccggcgccaccccggtccaccagcaaatccaaacagcagcgcaacatccgcaccgagctg
gagcagaggcagggcgggaaaccgcttctcaacctggtcgtcataggacacgtggacgcc
gggaagagcacgctcatgggtcacctcctatacctgctggggaacgtgaataaacgcacc
atgcacaaatacgagcaggaggccaagaaagccggcaaggcgtcttttgcttacgcctgg
gtgctggacgagaccggagaggagcgagacagaggagtgaccatggacgtgggcatgacc
aagtttgagaccggctccaaagtcgtgacgctgatggatgccccaggacacaaagacttt
attcctaacatgatcactggagcggcacaggcagacgtggccgtgttggtggtggacgcc
agtcggggagagttcgaggccgggttcgaggcaggcggtcagaccagagaacacgctctc
ctcgtacgatccctcggcgtcacccaactcgctatcgctgtcaacaagatggaccaggtg
aactggcaacagtcgaggttccaagaaatcacttccaaactcggccagtttctcaagcag
gccgggttcaaggactcagatgtgtattacgtccccaccagcggtctgtcaggacagaat
ctcaccaccagaagcaccgaagctgccctcagtgcctggtacaaaggcccaagtctgctg
gaacagatagactcgttcaaagcacctcagagatcagtcgagaagcccttcagactctgc
gtgtcagacgtctttaaagatcagggttctggcttctgcgtgtccgggaaaatcgaagcc
ggcttcgtacagacaggcgaccgagtgctggccatgcctcccaacgagacctgcactgtg
aaaggtatcagtcttcacgatgaggcgttagactgggcggccgccggtgaccacgtcagt
ctgaccgtcacagggatggacattataaagatcaatgtcggctgtgttttctgtgacccc
aaggagcccatcagggcctgcactcgcttccgagccagaatccttctgtttaacattgaa
ttcccggttacacaaggaatccctgtgctgttgcactaccagacagtgagtgagcctgcc
accatcaggaagctcgtcagtgtgttacacaaaaccagcggcgaggttctgaaaaagaaa
cccaaatgtttgggtaaaggtcagaacgctgtggtggagattcagactcagagacctgtg
gctctggagctctataaggactataaagaactcggccgcttcatgctgcgctatgtcggc
tccaccatcgctgctggggtcgtcacagagatcaaagaataa
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