KEGG   Clarias gariepinus (North African catfish): 128510228
Entry
128510228         CDS       T10780                                 
Name
(RefSeq) collagen alpha-1(XX) chain-like isoform X1
  KO
K24357  collagen type XX alpha
Organism
cgar  Clarias gariepinus (North African catfish)
SSDB
Motif
Pfam: fn3 VWA Collagen Pur_ac_phosph_N VWA_2 YjeF_N DUF2529
Other DBs
NCBI-GeneID: 128510228
NCBI-ProteinID: XP_053338330
LinkDB
Position
22:complement(11958668..12006137)
AA seq 1585 aa
MRTEETGQRRAAASGPTVLWCSSGLLSRLPLYPCPMLALVWIILLILASGVSTQGRLKLT
VLSEDRLQMKWKEAEGPVQGYKVRVRPISEVPQPELMLTTTRGRATVAGLDSTQEYLLQV
LVLNGTVEKLIAKRRFTIDVLREEEEARNGNQKHKRKVQAVGSGSGEMDDATEVLESLPT
VLYQDPTTKETPTITEQEEQEVEKGKDKKKKKKDKNRPKIKDEKVESRSKPAEEEHKVRK
NTPVTAGSSHKPFECRAGVQADLVLLVDGSWSIGRTNFKKVREFLEGLVTPFHIGPYGVQ
FALSQYSGDPRTEWQLNNFTAKEQLLDAVRNFRYKGGNTFTGQALIHVLEENLKEEVGAR
SDTPQFLLLLTDGKSQDDAVAAASRLKNAGVEIIAVGVKNADEAELKQIASEPLDLNVYN
VNDFPLLSKLVGRLVRILCGKMEERSKTRRAQPTEDPGLSYPSPTDLQYSELGPKEVRLS
WTNPGRAVHQYRVVFHSSEGQSPQEVVVKGLNSTVMLTGLASQTQYHVSIFPVYEDNVGS
PLRGIFTTTMLAMPESLEVTASSPSSLRVRWRPAHGATQYMALYSALTDGEPDDAREVKF
RADETDVELRDLMPSTDYSVTVYALYEDEPSDPATAVATTFQLPSPLTLQFPMVSHSALK
VTWVPGAVDVPAHRVTYSTNHGSDVKQVEVADVNTVLLQNLSSLSKYLVSVQSLYAKGLS
TPLTGNITTLRVPAPSELQVTNYSENALTVHWEPAADDVTSYLIKWISLSGGDLRQLKVN
GQSEGAMLEDVEDDKEYQISLSALYADGAQSEAVAIRYSTLYGGGPSSVSISEETPVSML
VSWLPPNAHVLQYHVSYTPLTPGDARENKVLLPGSERRVLLQSLLPDTRYSVLVTAEYRN
KEGGSASAQGKTTSLRVSSVSVVRSDHSSICVSWRPVAAVTAYRIVIYGLKDKQKKEETV
QSTSNSHCFYELQPETVYRISVHSRLGTVESTPVTILHPTAVAPLRAQVPPRLHPIQKEM
CPEMTIRNSVVKGFNMMEAFGLTQRAHSTVEGVSVEPFIFSTLPSYTLYRDVQLTQSTGF
IHPSGFSPEHTISMAFRLLQDSPKEPFALWQLTDNDFQPKMGVVLDPERKVLLYFSLDYR
GEVQELTFDQPQVHTLFYGSFHKVHLSISQVSVSLSVDCRRVGERPARPLGNIPTDGFEM
LGKLVRSRGPRSGSAAFQLQSFEIICNITWALEDTCCDLPSQRDEESCPALPYACTCTSD
IPGAPGEMGSPGKPGPRGQKGEKGEGGQKGEMGPPGKAGPEGGLGPVGSLGPRGITVMGK
IGPPGIRGEKGEMGIPGKIGLPGPPGPIGEMGNPGPKGTRGVEGNMGPTGTTGPRGLQGI
PGHPGPAGERGPLGPVGPSGLPGIKGERGEKGEPQSLAIIYDLVTQACEKLVHDEVHKLD
EFLNEIRRNPVPVEEPVGPPGEPGIPGGKGRPGLRGPPGRQGNRGETGRPGYPGEQGRTG
LAGMKGDPGSTVHGPPGKMGFPGPPGESKMGNPGPRGVDGKSGIPGISGAAGQPGELGPP
GLCDSSSGCHRGGHPPADPYYGYQP
NT seq 4758 nt   +upstreamnt  +downstreamnt
atgcgcacagaggaaaccggacaacgacgcgctgctgcttcaggtcccacagtgctctgg
tgttcttctggtcttctctcacgtcttcctctctatccatgtccaatgttagccctcgtt
tggataattcttttaatactggcctctggagtttctactcaaggccgattaaagctgact
gttttgtcagaggaccggctccagatgaaatggaaggaggctgaggggccagtacaaggc
tacaaagtcagagttagaccaatctcagaagttcctcagccagagctgatgctgaccaca
acacgcggtcgtgccactgtggcaggcctagattccacccaggagtacctgttacaagtg
ctggtgcttaatggaactgtggagaagctcatcgcgaaaagacgctttacaattgatgtg
ctgcgggaggaagaggaggcccgcaatggaaaccaaaagcacaagaggaaggtccaggcc
gtgggctcaggctctggtgagatggacgatgccactgaggttctggagtcattacctact
gtcctttaccaggatccaaccactaaagaaactcctaccattactgaacaagaggagcaa
gaggtcgaaaaaggcaaggataagaaaaaaaagaagaaagacaaaaaccgtccaaagata
aaggatgagaaggttgaaagcagaagtaaacctgcagaagaggagcacaaagtgagaaaa
aacaccccagttacagctggatcctctcacaagccgttcgagtgccgggccggcgtgcag
gctgatctcgtcttgttggtagacggctcctggagtattggacgcactaactttaaaaag
gtgcgggagttcctagagggcctggtcacccccttccacattggcccatatggagtgcaa
tttgccttgtcccagtacagtggagaccctcgcaccgagtggcagcttaataactttaca
gctaaagagcagctccttgacgctgtacgaaactttagatacaaaggagggaatacgttt
acaggtcaggctctcattcatgtcctggaggagaatttgaaggaagaggtcggggccagg
tcagataccccacaatttctgctgcttttgactgatggtaaatctcaggatgatgccgtt
gctgcagccagtcggctgaaaaatgccggagtggagatcatcgctgtgggcgtaaagaat
gcagatgaggccgagcttaaacagatagcatcggaacctctggacttgaacgtgtacaat
gtgaatgatttccccttgctcagtaaactggttggccgactggtgcgaatcctgtgcggg
aaaatggaggagcgcagcaaaacaagacgtgcgcagcctacagaagacccagggctgtcc
tacccgagtcccacagacttgcagtactctgagcttggtccgaaagaagtgcgtttgagc
tggacaaatcccggcagagcggtgcatcagtacagggtggtgttccacagcagtgaggga
caaagcccacaggaggtggtggtaaaggggttaaactccacagtgatgctgaccgggttg
gcctcacaaacacaataccacgtgtcgatctttcctgtatatgaagacaatgtgggttct
ccactaagaggcatcttcactacaacaatgctggccatgcctgagtctctggaggtcact
gcatcctctcccagtagtctccgggttcgctggaggcctgctcatggagctactcagtac
atggcactctactcagctctaactgatggagaacctgacgatgctcgagaggtgaagttt
agagctgatgaaactgatgtagagctgcgtgatctgatgccttctacagactactcagtc
actgtgtacgctttgtacgaagacgagccaagtgatccggccaccgctgtcgctaccaca
ttccaactaccttctcctctcactctgcagttcccaatggtcagtcacagcgctcttaaa
gtcacatgggtgcctggcgcagttgatgttcctgcgcatcgtgtcacctacagcacaaat
catgggagtgatgtcaaacaggtggaggttgcagatgtgaacacagtcttactgcagaat
ctgtcctcactgtccaagtacctggtctctgtgcagtccctctatgcaaaagggctgtct
actccactcactggtaacatcactacattaagagtgcctgctccgtctgagctccaggtc
actaactactctgagaacgctttaacagtacactgggagccagctgcagacgacgtgaca
tcctacctgattaaatggatctctttgagtggaggagacctcaggcagctgaaagtgaat
gggcaaagtgaaggagccatgctggaggatgtcgaggatgataaggaatatcagatctct
ttatctgccctctatgctgatggagcacaaagtgaggctgtggctataagatacagcacc
ttgtatgggggaggtcccagtagtgtgtccatctctgaagagactccagtcagtatgttg
gtcagctggcttcctcctaatgctcatgtgctgcagtaccatgtgtcgtacacaccttta
acacctggagatgcacgggagaacaaagtgttgttgccaggcagtgaaagacgagtcctt
ttgcagtctctactccctgacactcgttacagtgtgctggttactgcagaataccgcaac
aaagagggaggcagtgcctcagcacaaggcaaaaccaccagtcttcgtgtgagcagcgta
agcgtagttcggtctgatcactcaagtatctgcgtgtcttggaggccagttgcagcagtc
acggcgtaccgcatagtaatctacggcctcaaagataagcagaaaaaagaggaaactgta
caatctaccagcaacagtcactgtttctatgagctgcaaccagagacagtgtatcggata
agcgtgcactcccgcctgggaacagtagagagcactcccgtcactattctccatcccaca
gctgtagcaccgttaagagcacaggttccaccaagactacatcccatacaaaaggaaatg
tgtcctgagatgactatcaggaatagtgtagttaaaggctttaacatgatggaggcattt
ggtctgactcagagagcccactcaactgtggagggtgtttcagtcgagcctttcatcttc
agcactcttcccagctacaccctctacagagatgtacagctgacccaaagcaccggcttt
atccatccatcaggcttttctccagaacacactatcagcatggctttccgcctgctgcag
gactcacccaaagagccctttgctctctggcagctgactgacaatgatttccagcccaaa
atgggggtggtgctcgaccctgaaagaaaagtcttgctctacttcagtctggactacagg
ggagaagttcaggagctgacttttgaccagccacaagtccacactcttttctatggcagc
tttcacaaggttcacctgtccattagtcaggtgagtgtatccctgtcagtggactgccgg
agggttggtgagagacctgcccgtcccctaggaaacatacccactgatggcttcgagatg
ctgggcaagctggtgagatctcgaggaccacgcagtggctctgctgctttccagctgcag
tcatttgagatcatatgtaacattacctgggccttagaggatacatgctgtgacctgcct
tctcagagagatgaggagagttgcccagctcttccttatgcatgcacctgcacttccgac
attccaggagcccctggggaaatgggatcacctgggaaacctggtcctcgtgggcaaaag
ggcgagaaaggagagggaggtcaaaagggtgaaatggggccccctggcaaggctggacca
gagggcggcttgggtcctgtggggtctttgggcccacgtggtataacagtgatgggaaaa
atagggcctccagggattcggggagagaaaggtgaaatgggaatacctgggaagattggt
ttaccaggtccacctggcccaataggtgaaatgggaaatccagggcctaagggaaccaga
ggggtggaaggtaatatgggacccacagggaccacagggccgagaggcttgcagggtata
ccaggccacccagggcctgccggagaaagggggcctctaggacctgtagggccttcagga
ctgcctgggattaaaggtgagaggggagagaagggagagccacagtctcttgccatcatc
tatgaccttgtcactcaggcctgtgaaaaactagtgcacgatgaagtacataagttagat
gaatttctaaatgagattcgccgcaatccggtgcctgttgaagagcctgttggacctcct
ggtgaacctggaatcccaggtggcaaaggacgcccaggacttagaggtcctcctggacga
caaggaaacagaggggagacaggcagaccagggtatcctggagaacagggacgcacaggt
ttggcaggtatgaaaggagatccaggttctactgtccatggaccaccaggaaaaatgggt
tttccaggacctccaggggaaagcaagatggggaacccaggccctcgaggtgtagatggt
aaatcaggtatccctggaatttctggagctgcaggacagcctggtgagcttggcccccct
ggtttgtgtgacagcagcagtgggtgtcatcgcggaggccatccacctgcagatccatac
tatggataccagccttga

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