Clarias gariepinus (North African catfish): 128510228
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Entry
128510228 CDS
T10780
Name
(RefSeq) collagen alpha-1(XX) chain-like isoform X1
KO
K24357
collagen type XX alpha
Organism
cgar Clarias gariepinus (North African catfish)
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
fn3
VWA
Collagen
Pur_ac_phosph_N
VWA_2
YjeF_N
DUF2529
Motif
Other DBs
NCBI-GeneID:
128510228
NCBI-ProteinID:
XP_053338330
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All DBs
Position
22:complement(11958668..12006137)
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AA seq
1585 aa
AA seq
DB search
MRTEETGQRRAAASGPTVLWCSSGLLSRLPLYPCPMLALVWIILLILASGVSTQGRLKLT
VLSEDRLQMKWKEAEGPVQGYKVRVRPISEVPQPELMLTTTRGRATVAGLDSTQEYLLQV
LVLNGTVEKLIAKRRFTIDVLREEEEARNGNQKHKRKVQAVGSGSGEMDDATEVLESLPT
VLYQDPTTKETPTITEQEEQEVEKGKDKKKKKKDKNRPKIKDEKVESRSKPAEEEHKVRK
NTPVTAGSSHKPFECRAGVQADLVLLVDGSWSIGRTNFKKVREFLEGLVTPFHIGPYGVQ
FALSQYSGDPRTEWQLNNFTAKEQLLDAVRNFRYKGGNTFTGQALIHVLEENLKEEVGAR
SDTPQFLLLLTDGKSQDDAVAAASRLKNAGVEIIAVGVKNADEAELKQIASEPLDLNVYN
VNDFPLLSKLVGRLVRILCGKMEERSKTRRAQPTEDPGLSYPSPTDLQYSELGPKEVRLS
WTNPGRAVHQYRVVFHSSEGQSPQEVVVKGLNSTVMLTGLASQTQYHVSIFPVYEDNVGS
PLRGIFTTTMLAMPESLEVTASSPSSLRVRWRPAHGATQYMALYSALTDGEPDDAREVKF
RADETDVELRDLMPSTDYSVTVYALYEDEPSDPATAVATTFQLPSPLTLQFPMVSHSALK
VTWVPGAVDVPAHRVTYSTNHGSDVKQVEVADVNTVLLQNLSSLSKYLVSVQSLYAKGLS
TPLTGNITTLRVPAPSELQVTNYSENALTVHWEPAADDVTSYLIKWISLSGGDLRQLKVN
GQSEGAMLEDVEDDKEYQISLSALYADGAQSEAVAIRYSTLYGGGPSSVSISEETPVSML
VSWLPPNAHVLQYHVSYTPLTPGDARENKVLLPGSERRVLLQSLLPDTRYSVLVTAEYRN
KEGGSASAQGKTTSLRVSSVSVVRSDHSSICVSWRPVAAVTAYRIVIYGLKDKQKKEETV
QSTSNSHCFYELQPETVYRISVHSRLGTVESTPVTILHPTAVAPLRAQVPPRLHPIQKEM
CPEMTIRNSVVKGFNMMEAFGLTQRAHSTVEGVSVEPFIFSTLPSYTLYRDVQLTQSTGF
IHPSGFSPEHTISMAFRLLQDSPKEPFALWQLTDNDFQPKMGVVLDPERKVLLYFSLDYR
GEVQELTFDQPQVHTLFYGSFHKVHLSISQVSVSLSVDCRRVGERPARPLGNIPTDGFEM
LGKLVRSRGPRSGSAAFQLQSFEIICNITWALEDTCCDLPSQRDEESCPALPYACTCTSD
IPGAPGEMGSPGKPGPRGQKGEKGEGGQKGEMGPPGKAGPEGGLGPVGSLGPRGITVMGK
IGPPGIRGEKGEMGIPGKIGLPGPPGPIGEMGNPGPKGTRGVEGNMGPTGTTGPRGLQGI
PGHPGPAGERGPLGPVGPSGLPGIKGERGEKGEPQSLAIIYDLVTQACEKLVHDEVHKLD
EFLNEIRRNPVPVEEPVGPPGEPGIPGGKGRPGLRGPPGRQGNRGETGRPGYPGEQGRTG
LAGMKGDPGSTVHGPPGKMGFPGPPGESKMGNPGPRGVDGKSGIPGISGAAGQPGELGPP
GLCDSSSGCHRGGHPPADPYYGYQP
NT seq
4758 nt
NT seq
+upstream
nt +downstream
nt
atgcgcacagaggaaaccggacaacgacgcgctgctgcttcaggtcccacagtgctctgg
tgttcttctggtcttctctcacgtcttcctctctatccatgtccaatgttagccctcgtt
tggataattcttttaatactggcctctggagtttctactcaaggccgattaaagctgact
gttttgtcagaggaccggctccagatgaaatggaaggaggctgaggggccagtacaaggc
tacaaagtcagagttagaccaatctcagaagttcctcagccagagctgatgctgaccaca
acacgcggtcgtgccactgtggcaggcctagattccacccaggagtacctgttacaagtg
ctggtgcttaatggaactgtggagaagctcatcgcgaaaagacgctttacaattgatgtg
ctgcgggaggaagaggaggcccgcaatggaaaccaaaagcacaagaggaaggtccaggcc
gtgggctcaggctctggtgagatggacgatgccactgaggttctggagtcattacctact
gtcctttaccaggatccaaccactaaagaaactcctaccattactgaacaagaggagcaa
gaggtcgaaaaaggcaaggataagaaaaaaaagaagaaagacaaaaaccgtccaaagata
aaggatgagaaggttgaaagcagaagtaaacctgcagaagaggagcacaaagtgagaaaa
aacaccccagttacagctggatcctctcacaagccgttcgagtgccgggccggcgtgcag
gctgatctcgtcttgttggtagacggctcctggagtattggacgcactaactttaaaaag
gtgcgggagttcctagagggcctggtcacccccttccacattggcccatatggagtgcaa
tttgccttgtcccagtacagtggagaccctcgcaccgagtggcagcttaataactttaca
gctaaagagcagctccttgacgctgtacgaaactttagatacaaaggagggaatacgttt
acaggtcaggctctcattcatgtcctggaggagaatttgaaggaagaggtcggggccagg
tcagataccccacaatttctgctgcttttgactgatggtaaatctcaggatgatgccgtt
gctgcagccagtcggctgaaaaatgccggagtggagatcatcgctgtgggcgtaaagaat
gcagatgaggccgagcttaaacagatagcatcggaacctctggacttgaacgtgtacaat
gtgaatgatttccccttgctcagtaaactggttggccgactggtgcgaatcctgtgcggg
aaaatggaggagcgcagcaaaacaagacgtgcgcagcctacagaagacccagggctgtcc
tacccgagtcccacagacttgcagtactctgagcttggtccgaaagaagtgcgtttgagc
tggacaaatcccggcagagcggtgcatcagtacagggtggtgttccacagcagtgaggga
caaagcccacaggaggtggtggtaaaggggttaaactccacagtgatgctgaccgggttg
gcctcacaaacacaataccacgtgtcgatctttcctgtatatgaagacaatgtgggttct
ccactaagaggcatcttcactacaacaatgctggccatgcctgagtctctggaggtcact
gcatcctctcccagtagtctccgggttcgctggaggcctgctcatggagctactcagtac
atggcactctactcagctctaactgatggagaacctgacgatgctcgagaggtgaagttt
agagctgatgaaactgatgtagagctgcgtgatctgatgccttctacagactactcagtc
actgtgtacgctttgtacgaagacgagccaagtgatccggccaccgctgtcgctaccaca
ttccaactaccttctcctctcactctgcagttcccaatggtcagtcacagcgctcttaaa
gtcacatgggtgcctggcgcagttgatgttcctgcgcatcgtgtcacctacagcacaaat
catgggagtgatgtcaaacaggtggaggttgcagatgtgaacacagtcttactgcagaat
ctgtcctcactgtccaagtacctggtctctgtgcagtccctctatgcaaaagggctgtct
actccactcactggtaacatcactacattaagagtgcctgctccgtctgagctccaggtc
actaactactctgagaacgctttaacagtacactgggagccagctgcagacgacgtgaca
tcctacctgattaaatggatctctttgagtggaggagacctcaggcagctgaaagtgaat
gggcaaagtgaaggagccatgctggaggatgtcgaggatgataaggaatatcagatctct
ttatctgccctctatgctgatggagcacaaagtgaggctgtggctataagatacagcacc
ttgtatgggggaggtcccagtagtgtgtccatctctgaagagactccagtcagtatgttg
gtcagctggcttcctcctaatgctcatgtgctgcagtaccatgtgtcgtacacaccttta
acacctggagatgcacgggagaacaaagtgttgttgccaggcagtgaaagacgagtcctt
ttgcagtctctactccctgacactcgttacagtgtgctggttactgcagaataccgcaac
aaagagggaggcagtgcctcagcacaaggcaaaaccaccagtcttcgtgtgagcagcgta
agcgtagttcggtctgatcactcaagtatctgcgtgtcttggaggccagttgcagcagtc
acggcgtaccgcatagtaatctacggcctcaaagataagcagaaaaaagaggaaactgta
caatctaccagcaacagtcactgtttctatgagctgcaaccagagacagtgtatcggata
agcgtgcactcccgcctgggaacagtagagagcactcccgtcactattctccatcccaca
gctgtagcaccgttaagagcacaggttccaccaagactacatcccatacaaaaggaaatg
tgtcctgagatgactatcaggaatagtgtagttaaaggctttaacatgatggaggcattt
ggtctgactcagagagcccactcaactgtggagggtgtttcagtcgagcctttcatcttc
agcactcttcccagctacaccctctacagagatgtacagctgacccaaagcaccggcttt
atccatccatcaggcttttctccagaacacactatcagcatggctttccgcctgctgcag
gactcacccaaagagccctttgctctctggcagctgactgacaatgatttccagcccaaa
atgggggtggtgctcgaccctgaaagaaaagtcttgctctacttcagtctggactacagg
ggagaagttcaggagctgacttttgaccagccacaagtccacactcttttctatggcagc
tttcacaaggttcacctgtccattagtcaggtgagtgtatccctgtcagtggactgccgg
agggttggtgagagacctgcccgtcccctaggaaacatacccactgatggcttcgagatg
ctgggcaagctggtgagatctcgaggaccacgcagtggctctgctgctttccagctgcag
tcatttgagatcatatgtaacattacctgggccttagaggatacatgctgtgacctgcct
tctcagagagatgaggagagttgcccagctcttccttatgcatgcacctgcacttccgac
attccaggagcccctggggaaatgggatcacctgggaaacctggtcctcgtgggcaaaag
ggcgagaaaggagagggaggtcaaaagggtgaaatggggccccctggcaaggctggacca
gagggcggcttgggtcctgtggggtctttgggcccacgtggtataacagtgatgggaaaa
atagggcctccagggattcggggagagaaaggtgaaatgggaatacctgggaagattggt
ttaccaggtccacctggcccaataggtgaaatgggaaatccagggcctaagggaaccaga
ggggtggaaggtaatatgggacccacagggaccacagggccgagaggcttgcagggtata
ccaggccacccagggcctgccggagaaagggggcctctaggacctgtagggccttcagga
ctgcctgggattaaaggtgagaggggagagaagggagagccacagtctcttgccatcatc
tatgaccttgtcactcaggcctgtgaaaaactagtgcacgatgaagtacataagttagat
gaatttctaaatgagattcgccgcaatccggtgcctgttgaagagcctgttggacctcct
ggtgaacctggaatcccaggtggcaaaggacgcccaggacttagaggtcctcctggacga
caaggaaacagaggggagacaggcagaccagggtatcctggagaacagggacgcacaggt
ttggcaggtatgaaaggagatccaggttctactgtccatggaccaccaggaaaaatgggt
tttccaggacctccaggggaaagcaagatggggaacccaggccctcgaggtgtagatggt
aaatcaggtatccctggaatttctggagctgcaggacagcctggtgagcttggcccccct
ggtttgtgtgacagcagcagtgggtgtcatcgcggaggccatccacctgcagatccatac
tatggataccagccttga
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integrated database retrieval system