Clarias gariepinus (North African catfish): 128510245
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Entry
128510245 CDS
T10780
Symbol
cnga1b
Name
(RefSeq) cyclic nucleotide-gated channel rod photoreceptor subunit alpha isoform X1
KO
K04948
cyclic nucleotide gated channel alpha 1
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar04744
Phototransduction
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09150 Organismal Systems
09157 Sensory system
04744 Phototransduction
128510245 (cnga1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cgar04040
]
128510245 (cnga1b)
Ion channels [BR:
cgar04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
128510245 (cnga1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
CLZ
cNMP_binding
ADI
CDC45
PFF1_TM
Sec62
Connexin
Tim54
Piezo_TM1-24
DUF3043
NPR3
Peptidase_U57
Zip
Neur_chan_memb
SLC52_ribofla_tr
Mat89Bb
BSMAP
DUF2828
DUF2126
Menin
Motif
Other DBs
NCBI-GeneID:
128510245
NCBI-ProteinID:
XP_053338363
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All DBs
Position
22:complement(28832346..28837313)
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AA seq
648 aa
AA seq
DB search
MKWLGQSAAMSNSVKPLVPPIILLEGAEEVTVIEAEDTTKRQSSDAGALFNINNSNNNEE
QEQKEKKKKEKKEKKETKEKKEKKKKKEKKKNKEQEEKEKEKEKEKEKAKKEEPKEVYVI
DPAGNTYYNWLFIITCPVMYNWVLIIARACFEELQQDYLVNWFIIDFLADLVYLADMVFR
TRTGYLEQGLLVKDEKKLRERYIESVQFKLDLISMIPTDIFYFFFGLNYPEIRMNKLFRV
NRLFEFFQRTETRTNFPNVFRISNLVMYIVIIIHWNACLYYSFSKAIGFGADRFVYPDTT
DPEFGRLVRKYAYSMYWSTLTLTTIGETPPPEKDSEYFFVVTDFLVGVLIFATIVGNVGS
MITNMNAARADFQARIDAIKQYMSFRNVTKDLEKRVIKWFDYLWTNKKAVDEREVLKYLP
DKLRAEIAINVHLDTLKKVRIFADCEAGLLVELVLKLQPQVYSPGDYICKKGDIGREMYI
IKEGKLAVVADDGVTQFVVLSDGSYFGEISILNIKGSKAGNRRTANIRSIGYSDLFCLSK
DDLMEALTEYPDAKAMLEEKGRQILMKDNLLDLELAKQGPDPKDMEEKVIKIGTVLDDMQ
TRFARLLSQHEATQSRLKRRVARLEGKITTSTGVTFTGATETEPPPEK
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atgaagtggctcggccaatcagctgccatgtcgaatagcgtgaagccgctcgttcctccc
ataatcctcctggagggggcggaggaggtgacggtgatcgaggcagaggacacgacgaag
aggcagtcatctgatgctggtgcactttttaacatcaacaacagcaacaacaatgaggaa
caggagcaaaaagaaaaaaagaagaaggaaaagaaagagaaaaaggagacaaaagaaaag
aaagaaaagaagaaaaagaaggagaagaagaagaacaaagagcaagaggagaaggagaag
gagaaagagaaggagaaggagaaagccaagaaagaggagccgaaggaggtttacgtcatc
gatcctgcgggaaacacctactacaactggctcttcatcatcacctgtcccgtcatgtac
aactgggttctgatcatcgccagagcctgttttgaggagttacagcaagattatttggta
aactggttcatcattgattttctagcagacctcgtttacctggcggacatggtcttcagg
acaaggacagggtatctggagcagggtctgctggttaaagacgaaaaaaagctcagagaa
cggtacatagagagtgtccagttcaagctggacctcatttctatgattcccacagacatt
ttttacttttttttcggcctcaactaccccgagatccgcatgaacaagctcttccgggtc
aaccgactctttgagtttttccagcgcacagaaacgaggaccaactttcccaacgtcttc
cggatctccaaccttgtcatgtacatcgtcatcatcatccactggaacgcctgcctctac
tactccttctccaaagctattggttttggggctgataggttcgtctacccggataccaca
gaccccgaattcggtcgtttggtgagaaaatacgcatacagcatgtactggtccactttg
accttgaccaccattggagaaactccgcctcctgagaaggattctgagtacttctttgta
gttacagacttcctagttggagttttgatctttgctacaattgtaggtaatgttggttcc
atgatcacaaacatgaacgcagctcgagcagattttcaagccagaatcgatgcgatcaag
cagtacatgagttttcggaatgtgaccaaggacctggagaaacgcgtcatcaaatggttt
gattacctttggaccaataagaaggctgtggatgaaagggaagtgctcaagtacctccca
gataagttacgagcagaaatagccatcaatgtgcatctggacactcttaagaaagtcaga
atctttgcagattgtgaagcaggacttttggtcgaacttgtgctaaagctccagccacag
gtttacagtcctggtgattatatttgcaaaaaaggtgacattggccgtgagatgtacatc
attaaagaaggaaagctagctgtggtggctgatgatggcgtcacacaatttgttgtcctc
agcgatggaagctactttggtgagatcagcatcctcaatatcaaaggcagtaaagctgga
aaccgaagaacagccaacatacgcagcatcggatactcggatttgttctgcctttccaag
gacgacttgatggaagcactgaccgagtatccagacgcaaaggctatgctggaggaaaaa
ggacgccagatcctcatgaaggacaacctgctggatcttgagctggcaaaacagggacct
gaccccaaggacatggaggagaaagtgataaagattggcacagtattggacgacatgcag
acacgtttcgctcgtttactttctcaacacgaggccacgcagagccgcctgaagagacgt
gtcgccagactggagggcaaaatcaccacctccactggggtcaccttcaccggggcgact
gagaccgagccgcctcctgagaaatga
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