Clarias gariepinus (North African catfish): 128510584
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Entry
128510584 CDS
T10780
Name
(RefSeq) interferon regulatory factor 7-like
KO
K09447
interferon regulatory factor 7
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar04620
Toll-like receptor signaling pathway
cgar04621
NOD-like receptor signaling pathway
cgar04622
RIG-I-like receptor signaling pathway
cgar04623
Cytosolic DNA-sensing pathway
cgar05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
128510584
04621 NOD-like receptor signaling pathway
128510584
04622 RIG-I-like receptor signaling pathway
128510584
04623 Cytosolic DNA-sensing pathway
128510584
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
128510584
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cgar03000
]
128510584
Transcription factors [BR:
cgar03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters interferon-regulating factors
128510584
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
IRF-3
IRF
DUF4194
Motif
Other DBs
NCBI-GeneID:
128510584
NCBI-ProteinID:
XP_053338961
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All DBs
Position
2:18138486..18145771
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AA seq
426 aa
AA seq
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MSIINSAARPQFGHWLLEQVQSMRYDGLYMIDRDTFRIPWKHNSRKDCGDEDNKIFREWA
VVSGKINEYPNDKAKWKTNFRCALNSLTQFKMIHDNSKDSENPHKIYRIIHSENHQQCSS
NYIEALYSSTNNQCEEMEYDLPNHMGTLHLNQQSTEMQYWPGYQQPIQNLADDPNYCIAQ
MPILQQPCLPNNILVPAPTYAQLPYNTVPQPIILPSVNELEITIHYRRTEMLKVHCASPL
VQLHSQCDQSELRGNSVPFPSTAELTDQKQVQYTKRLLDNIKRGLLLEVCSSGIYGFRQD
KCNVFVSTCDPAEIHNPEPRKLSQNQNELLFSFDKYKKDLMDFKENRRGSPDYTIYLCFG
EKFPDGKPLERKLIVVKVVPLICRELHKAAQLEGASSLHNDNISLQISHNSLYDLIEASF
SPPPAV
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atgtcgataataaacagcgcagcgcgaccgcagtttggacactggctcctggagcaggta
cagtctatgcgctacgatggactttacatgatcgacagagacacattccgcatcccgtgg
aaacacaactcgaggaaagactgcggagacgaagacaacaagatattccgagaatgggct
gtggttagtggtaaaatcaatgagtatcccaatgacaaggcaaagtggaagaccaacttc
cgctgtgctctcaacagcctcacgcagtttaagatgatccatgacaactccaaggactca
gaaaatccccataaaatctatcgcatcatccattctgaaaaccatcagcagtgctcaagc
aattacattgaagccctgtacagctctactaacaatcagtgtgaggaaatggagtatgat
ttgccaaaccacatgggcaccttgcatctaaaccaacagtccacagaaatgcagtattgg
ccaggctatcaacaacctatccaaaacctagcagatgaccctaactactgtatcgctcaa
atgccaatattgcagcagccttgccttccaaataacattcttgttccagcaccaacttat
gcacaactaccctacaatacagtaccccagcctatcatcctgccttctgtcaatgagcta
gagatcaccattcactacaggagaacagagatgctgaaggtgcattgtgcaagtccactt
gttcagctccactcacaatgcgatcagtcagagctaaggggcaactctgtgcccttcccc
agcactgcggagcttactgaccaaaaacaggtccagtacactaagcgcctcctggacaat
atcaagcggggtctgctcctagaggtctgctcttcaggtatctatggattccgccaggac
aagtgtaatgtgtttgtcagcacctgcgatcctgctgagatccacaatccagaacccaga
aagctgtcccagaaccagaatgaactgctgttcagctttgacaaatacaagaaagatctc
atggacttcaaagagaacagacgtggttctcctgattacaccatctatttgtgctttgga
gagaagttcccagatggaaagccactggagagaaagctgatcgttgtgaaggtcgtgccc
ctgatttgtcgtgagttgcataaggcagcacagctggagggagcttcatctctacacaac
gacaacatcagcctacagatctcccacaacagcctgtatgacttgattgaagccagtttc
tcaccacccccagctgtttaa
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