Clarias gariepinus (North African catfish): 128510592
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Entry
128510592 CDS
T10780
Name
(RefSeq) interferon regulatory factor 7-like isoform X1
KO
K09447
interferon regulatory factor 7
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar04620
Toll-like receptor signaling pathway
cgar04621
NOD-like receptor signaling pathway
cgar04622
RIG-I-like receptor signaling pathway
cgar04623
Cytosolic DNA-sensing pathway
cgar05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
128510592
04621 NOD-like receptor signaling pathway
128510592
04622 RIG-I-like receptor signaling pathway
128510592
04623 Cytosolic DNA-sensing pathway
128510592
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
128510592
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cgar03000
]
128510592
Transcription factors [BR:
cgar03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters interferon-regulating factors
128510592
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
IRF-3
IRF
DUF4194
Motif
Other DBs
NCBI-GeneID:
128510592
NCBI-ProteinID:
XP_053338973
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All DBs
Position
2:18182308..18191457
Genome browser
AA seq
426 aa
AA seq
DB search
MSIINSAARPQFGHWLLEQVQSMRYDGLYMIDRDTFRIPWKHNSRKDCGDEDNRIFREWA
VVSGKINEYPNDKAKWKTNFRCALNSLRQFNMIHDNSKNSENPHKIYRIIHPENHQQCST
NHIETLYSSTNNQCEEMMYDLPNHMDTLHLNQQPTEMQYWAGYQQPIQNVADDSTCYMPI
VPQPYLPSNMPVPAQTLAQVPNNAAFSVPQPIILPSVNELEITIHYRRTEMLKVHCASPL
VQLHSQCDHSELRGNSVPFPSTAELTDQKQIQYTKRLLDSIKRGLLLEVCSSGIYGFRQD
ECNVFVSTCDSAEIQDEEPKKLSQNQKELLFSFEKYKKDLIDFKENRSGSPDYTIYLCFG
QKFPDGKPLERKLIIVKVVPLICRELHKAAQLEGASSLHSENISLQISNNSLYDLIEAAF
SPPSAV
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atgtcgataataaacagcgcagcgcgaccgcagtttggacactggctcctggagcaggta
cagtctatgcgctacgatggactttacatgatcgacagagacacattccgcatcccgtgg
aaacacaactcgaggaaagactgcggagacgaagacaacagaatattccgagaatgggct
gtggttagtggtaaaattaatgagtatcccaatgacaaggcaaagtggaagaccaacttc
cgctgtgctctcaacagccttagacagttcaacatgatccatgacaactccaaaaactca
gaaaatccccataaaatctatcgcatcattcatcctgaaaaccatcagcagtgctcaacc
aatcacattgaaaccctgtacagctctactaacaatcagtgtgaggaaatgatgtatgat
ttgccaaaccacatggacaccttgcatctaaaccaacagcccacagaaatgcagtattgg
gcaggctatcaacaacctatccagaacgtagcagatgacagcacttgctatatgccaatt
gtgccgcagccttatcttcctagtaacatgcctgttccagcacaaactttagcacaagtg
cccaacaatgcagccttctcagtgccccagcctattatcctgccttctgtcaatgagcta
gagatcaccattcactacaggagaacagagatgctgaaggtgcattgtgcaagtccactt
gttcagctccattcacaatgcgatcattcagagctaaggggcaactctgtgcccttcccc
agcactgcggagcttactgaccaaaaacagatccagtacactaagcgcctcctggacagt
atcaagcgaggtctgctcctagaggtctgctcttcaggtatctatggattccgccaagat
gagtgcaatgtgtttgtcagcacctgcgattctgccgagatccaggacgaagagcccaaa
aagctgtcccagaaccaaaaagaactgctgttcagctttgagaaatacaagaaagatctc
atagatttcaaagagaacagaagtggatctcctgattacaccatctatttgtgctttggg
cagaagttcccagacggaaagccactggagagaaagctgatcattgtgaaggtcgtgcct
ttgatttgtcgtgagttgcataaggcagcacagctggagggagcttcgtctctgcacagt
gagaacatcagcctgcagatctccaacaacagcctgtatgacttgattgaagccgctttc
tcaccaccctctgctgtttaa
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