Clarias gariepinus (North African catfish): 128510638
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Entry
128510638 CDS
T10780
Symbol
upf2
Name
(RefSeq) regulator of nonsense transcripts 2
KO
K14327
regulator of nonsense transcripts 2
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar03013
Nucleocytoplasmic transport
cgar03015
mRNA surveillance pathway
Brite
Messenger RNA biogenesis [BR:
cgar03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
128510638 (upf2)
mRNA cycle factors
P-body specific factors
128510638 (upf2)
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Gene cluster
GFIT
Other DBs
NCBI-GeneID:
128510638
NCBI-ProteinID:
XP_053339046
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Position
2:complement(33970221..33989659)
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AA seq
1278 aa
AA seq
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MPAERKKSVNADEKETGPFSNKEREKDRDGDRRATFSREKGRDEGKMSGKKEGGKSADEK
KRRIEEEKRRKEEKERKKREEEKLKAEEEQKRKEEEERKQQEEQEKKLLEEEAKRQKEEE
AAQLKEKEEAQQLHQEAWERHQTRKELRVKNQHAQESRPEEAFFSRLDSSLKKNTAFVKK
LRTLTEQQRSSLSHDFDSLNLSKYIGEAVSSLVEAKLKISDVGCAVHLCSLFHQRYSDFA
PQLLAAWKRHFEARKEEKAPNVSKLRTDLRFIAELTIVGLFTDKEGLSLIYEQLKNIIGA
DRETHTHVSVVISFCKHCGDDIAGLVPRRVKSAAEKFSLVFPPSEIINTEKQQPFQNLLR
EYFTSLTKHLKKDHRELQNIERQNRRILHSKGELSEDRHKQYEEFATCYQKLLANTQSLA
DLLDENMPELPQDKTVQEEHGPGIDIFTPGKPGDYELDGGIWEDEDARNFYENLVDLKAF
VPAILFKDNEKTNQSKDKEESKEAKEGQEGKDVSCTEELELELEALDITDDPLELEAADE
AENEELAKKLLDEQEQEDEEASTGSHLKLIVDAFIQQLPNCVNRDLIDKAAMDFCMNMNT
KSNRRKLVRALFTVPRQRLDLLPFYSRLVATLHPCMSDVAEDLCSMLKGDFRFHVRKKDQ
INIETKNKTVRFIGELAKFKMFSKTDTLHCLKMLLSDFSHHHIEMACTLLETCGRFLFRS
PESHLRTSVLLEQMMRKKQAQHLDARYVTMVENAYYYCNPPPMEKTVRKKRPPLQEYIRK
LLYKDLSKVTTEKVLRQMRKLPWHDADLKSYLICCMVNIWNVKYNSIHCVANLLAGLVAY
QEDVGIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLFSFI
SFGVNQDGLPSPLDPPEHLFRIRLVCTLLDTCGQYFDRGSSKKKLDCFLIYFQRYIWWKK
SLEVWTKDHQFPIDIDYMISDMLDLLRPKMHLCCSLEEACHQVAELEREVLIKLGFALDK
DGSCSTTVGEGEALDEEDEDDEDERGAETEEQSGNESEMNEPEEEEGSENEEEEHDEEEE
NTDYLTDSNKENETDEENNEVMIRGGGLKHVACAEDDDFIQALDKMMLENLQQRSGEAVK
VHQLDVAIPLQLKSQLKKGSAPTCTGDADTDIDTMQFVMLTRKGNKQQFKILNVPLSSHL
AANHFNQQQAEQEERMRMKKLTLDINERQEQEDYQEMMQSLAQRPAPANTNRERRPRYQH
PKGAPNADLIFKTGGRRR
NT seq
3837 nt
NT seq
+upstream
nt +downstream
nt
atgccggctgaacgcaagaaatcagtaaatgcggatgagaaagagacaggccccttcagt
aacaaagagagagagaaagaccgagatggcgatagaagagcgacgttctcccgagagaag
ggcagagatgagggcaaaatgagtggaaagaaggagggtggcaaatccgctgacgagaag
aagcgaaggatcgaagaggagaagaggcggaaagaagagaaggagaggaaaaagagggag
gaagaaaaactgaaggctgaagaagagcagaaaaggaaagaagaagaagaacgaaagcag
caagaggaacaggaaaagaaactgctggaggaggaagctaaacgacagaaagaagaggag
gctgctcagctaaaggaaaaggaggaagctcagcagctgcaccaggaggcatgggagaga
caccaaaccaggaaggaactgcgtgtaaagaatcagcacgcgcaagagagccgtcctgaa
gaagcctttttcagccgtctggattccagcctgaagaagaacacagcttttgttaagaag
cttcgcactctcacggagcagcagcgcagttcgctctcgcacgacttcgactccctcaac
ctgagcaagtacatcggggaggcggtcagctctctggtggaggccaagttaaagatctca
gatgtgggctgtgccgtccacctgtgctcacttttccaccagcgctactccgattttgct
ccacagctcctagctgcgtggaagaggcacttcgaggcacgtaaagaagagaaagctccg
aacgtcagcaagctgcgcacagacctgcgcttcatagctgaacttaccattgtggggttg
ttcacggataaagaaggactctctctgatctacgagcagctaaagaacatcatcggggca
gaccgtgaaacgcacacacacgtatcggtagtgatcagcttctgcaaacactgcggagac
gacatcgccgggttggtgcctcgccgcgtgaagagcgcagcagagaagtttagcctggtt
tttcctcccagcgagatcatcaacactgagaagcagcaacccttccagaacttgctccga
gagtatttcacctctcttaccaagcacctcaagaaagatcacagagagctgcagaacatt
gaacggcaaaataggcgaatccttcactccaaaggggagctaagtgaagatagacataag
cagtatgaggagtttgcaacatgctatcagaaactgctggctaacactcagtctctggct
gatctcctggatgagaacatgcctgagctgcctcaggataaaactgttcaagaagaacat
ggtccggggatcgacatcttcaccccagggaaacctggagactacgagctggatggaggg
atctgggaggatgaggatgcacggaacttttacgaaaatctggtggacctgaaggccttt
gttcctgccattctgttcaaggacaatgaaaagaccaaccagagcaaagacaaggaagaa
agcaaagaagctaaagaaggccaggaggggaaagacgtgagctgcacagaggagctagag
ctggagcttgaagccttggatatcacagatgaccctctagagctagaagctgctgatgag
gctgagaatgaagaactggccaagaaacttctcgatgaacaagaacaagaggacgaggaa
gcgagcaccggctctcatcttaaactcatcgtcgacgctttcatccagcagcttcccaac
tgtgtaaacagagacctgatcgacaaggctgccatggacttctgtatgaatatgaacaca
aagtccaatcgcaggaagcttgtccgcgcgcttttcaccgttcccaggcaaaggctggat
ctcttgcccttctattcccggctggtggcaactctgcatccgtgcatgtccgacgtagcg
gaggatctctgctccatgctcaaaggagacttccggttccacgtaagaaagaaggaccaa
ataaacatcgagaccaagaataagacagtgaggtttattggcgagttggccaagttcaaa
atgttttccaaaaccgacacgttgcattgcctgaagatgctgctgtctgatttctctcat
caccacatcgaaatggcctgtactttactggagacgtgcgggcgctttctcttcaggtcc
cccgagtctcacctgcgtaccagcgtcctactggagcaaatgatgcggaaaaagcaggct
cagcacctggacgctcgctatgtgacgatggttgagaacgcttactactactgcaacccg
ccacccatggagaaaaccgtgcgcaagaagaggcctccgctgcaggagtatatccgcaaa
ctgctctacaaagacctgtcgaaggttaccactgagaaggttttaaggcagatgcggaaa
ttgccctggcacgatgcagatttaaagagctacctgatctgctgcatggtgaacatttgg
aacgtgaagtacaacagtattcactgtgtggcaaacttgctggccggtcttgtcgcatat
caggaagatgtcgggatacacgttgtagatggagtcctggaggatatacgtctcggcatg
gaggtcaaccagcccaaatttaaccagcgacgcatcagcagcgcaaagttcctgggcgag
ctgtacaactaccgcatggtggagtcggctgtgatcttccgaacgctgttctccttcatc
tcattcggtgtgaatcaggacggcttacccagtcctctggatcccccggagcacctgttt
cggattcgcttggtgtgcacgctgcttgacacctgtggccagtactttgatcgcggctcc
agtaaaaagaagctagactgcttcctcatctacttccagaggtatatctggtggaaaaag
agtttggaagtgtggactaaagaccaccagtttcccatcgatattgactacatgatcagt
gacatgttggatttgctacgacccaaaatgcacctgtgctgctctctggaggaagcctgc
catcaggtggctgaactggagagagaggtcctcatcaaactgggttttgctttagacaag
gacggaagctgttccaccaccgtaggagaaggtgaggctcttgatgaggaggatgaggat
gacgaagacgaacgtggagcagagacggaagagcagtccggaaatgagagtgaaatgaat
gaacccgaggaggaggaaggctctgaaaacgaggaagaagagcatgacgaggaggaagag
aacactgactacctgaccgattccaataaagagaatgagactgacgaggaaaacaatgag
gtgatgattcgtggtggaggtctaaagcatgtcgcctgcgctgaggatgacgactttatt
caggctctagacaagatgatgctagaaaacttgcagcaacgcagtggcgaggcagtaaaa
gttcatcagcttgacgttgctatcccgctgcagctgaaaagtcagctgaaaaaaggctcc
gcccccacgtgcacaggagacgcagacactgacatcgacaccatgcagtttgtcatgctg
accagaaaaggcaacaaacagcagtttaagatcctgaatgtgccactatcatcacatctg
gccgccaatcacttcaaccagcagcaggcagagcaggaggagcgcatgcgtatgaagaaa
ctcactctagacatcaacgagcggcaggagcaggaagactaccaggagatgatgcagtcg
ctggctcagagacctgcccctgctaacacaaaccgagagcgcagaccacgctaccagcac
ccgaaaggagcaccgaacgcagacctgatattcaagactgggggaaggagacgctga
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