Clarias gariepinus (North African catfish): 128510987
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Entry
128510987 CDS
T10780
Symbol
pdzrn4
Name
(RefSeq) PDZ domain-containing RING finger protein 4
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
cgar Clarias gariepinus (North African catfish)
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cgar04121
]
128510987 (pdzrn4)
Enzymes [BR:
cgar01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
128510987 (pdzrn4)
Ubiquitin system [BR:
cgar04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
128510987 (pdzrn4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
PDZ_Tricorn
Motif
Other DBs
NCBI-GeneID:
128510987
NCBI-ProteinID:
XP_053339554
LinkDB
All DBs
Position
2:complement(28411663..28459921)
Genome browser
AA seq
741 aa
AA seq
DB search
MGCNLCSLQKREEHYKLLYEISQVNGKDLSRASHEEAVEAFRTAKDPIVVQVLRRQPLPL
GQGSSQDVQLVDVCTQTDITFEHIMALAKLRPSSPPVPDICPFLLSDSCHSLHTMGQEYY
EGSEYLSNMPAEAERTDELEYEEVELCRLNSQEKLGLTLCYRTDDEDDVAIYVSEIGPNS
IAARDGRIREGDRILQINGQDVQNREEAVALLSSEDTRNIVLLVARPEMQLEEAWLDDEH
TEFLEELKMEMLEEQRREEEEMERAAREEDEQVRKGEQEDMMGSSACCSTSQEKSCAVGS
MPHGADSSEQSVLAQLQKRLSRCLRQRRDSQESPREEVGRSEGECYQQLLQLKCQIRNSG
EYDLFYSRSSTIECSLTEQGGSNGMERELRLLNEELRNIELECQSIMQAQQLRKRELQQA
GTAKEQGKQSPHRGKLAHISERPEKSDKDSSSAYNTAESSRSTPLLMDRSPEHSVQRLVS
LTNQKNLRSTMLVGRGSAPCHRLKRAPSGSPDHSNPSESEQTPPAEEESLPRKERTLRSR
IPYLSPRHQQTDIPAHATHYQSYMQLIQQSSAVEYSQCQLSLPAQPSEPKLEWKVKVRSD
GTRYITKRPVRDRLLRERALKIKEERSGGMTTDDDAMSEMKMGRYWSKEERKQQLLRAKE
QRRRREFMQRCRLESLKECPQSSGEGRKELSIIELSQRKMMKKRNKKILDNWMTIQELMT
HGAKEPEGAKVHNAFLSVTTV
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
atgggctgcaatctgtgctcactgcagaagagagaggagcattacaaactgctttatgaa
atttcgcaggtgaatgggaaggacttatcaagagccagccatgaggaggcggtggaggct
ttccgcactgccaaagaccccattgtggttcaggtgctccgtcggcaaccgctgcctctg
ggtcaagggtcatctcaggatgtccagctggtggatgtgtgcacacagacagacatcacc
ttcgagcacatcatggctcttgccaaactccggcctagcagcccacctgtgccagacatt
tgccctttcctgctctcagacagctgtcactccctccacaccatgggccaggagtattac
gaggggagtgagtatctctccaacatgccagctgaggctgagaggactgatgagttagag
tatgaggaggtggagctttgccgcctgaacagtcaggagaaactcggcctcacgctttgc
tacaggacagacgatgaggatgatgttgccatctatgtgtcagagatcggacctaatagc
atagcagcccgagatggtcggattcgggaaggggatcgtattttgcagataaatggtcag
gatgtgcagaacagagaggaagcagtggctttactctctagtgaggacactagaaacatt
gtactgcttgtagctagaccagagatgcagctggaggaggcctggttagatgatgagcac
acagagtttttagaagaacttaaaatggaaatgctggaagaacaacgaagagaggaagag
gagatggagagagcagcaagagaagaggatgagcaggtcagaaaaggagagcaggaggat
atgatgggtagcagtgcttgctgctccaccagccaggagaaaagttgtgctgtgggatcc
atgccccatggagctgatagctctgagcagagtgttctagcccagctccagaagagattg
tccaggtgtctgaggcagcgtcgagacagccaagaatcaccaagggaagaggtaggacgt
tctgaaggcgagtgctaccagcagctgttgcagctaaagtgccagatccgtaatagtggc
gagtatgacctgttctatagcaggagtagcacgattgagtgcagcctcactgaacagggt
ggaagcaacggcatggagcgtgagctacgtctcctcaatgaggagttgcgtaacattgag
ctggaatgtcagagcatcatgcaggcacagcagcttcgaaaaagggaacttcagcaggct
gggactgccaaagagcagggaaagcagagtcctcaccgaggcaagctggcccacattagt
gaacgtccagaaaagtcagacaaggacagctcaagtgcttataacacagcagaaagttca
cgcagcacgccactactcatggaccgttcaccagaacattctgtgcagagactagtcagc
ctgaccaatcagaaaaacctgaggagcactatgcttgtgggacgtggctctgctccctgc
catcgtctaaaaagggctccaagtggcagccctgaccacagcaacccatctgaatcggag
cagacacccccagcagaggaagaaagcttacccaggaaagagagaacgttaagatctcgg
attccctacctctccccccggcaccagcaaacggacattcctgcccatgctacacactac
cagagctacatgcagcttattcagcagagctcagctgtagaatactcacagtgtcagctc
agtcttcctgcacagccatctgagccaaaactcgagtggaaggtaaaggtgcgcagtgat
ggcacacgttacatcaccaagcgtccagtgcgagaccggttgctgcgtgagcgagcactg
aagatcaaagaagaacgtagcggtggtatgaccacagatgatgacgccatgagtgagatg
aagatgggccgctactggagcaaggaagagcgcaagcagcagttgctgagggccaaagaa
cagaggcgacgtcgcgagttcatgcagcgctgccggctcgagagtctaaaagagtgccca
cagagcagcggtgagggccgcaaagaactcagcatcatcgaactcagccaacgcaagatg
atgaagaagcgcaacaagaagatcctagacaattggatgaccattcaggagctgatgacg
catggagcgaaagaacccgaaggggccaaagttcacaatgccttcctttcagttacaact
gtatag
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