Clarias gariepinus (North African catfish): 128511002
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Entry
128511002 CDS
T10780
Symbol
csf1a
Name
(RefSeq) macrophage colony-stimulating factor 1a
KO
K05453
macrophage colony-stimulating factor 1
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar04010
MAPK signaling pathway
cgar04060
Cytokine-cytokine receptor interaction
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
128511002 (csf1a)
09133 Signaling molecules and interaction
04060 Cytokine-cytokine receptor interaction
128511002 (csf1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04052 Cytokines and neuropeptides [BR:
cgar04052
]
128511002 (csf1a)
Cytokines and neuropeptides [BR:
cgar04052
]
Cytokines
CSF and other factors
128511002 (csf1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CSF-1
Nmad5
EC042_2821
Motif
Other DBs
NCBI-GeneID:
128511002
NCBI-ProteinID:
XP_053339575
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All DBs
Position
23:complement(16831434..16844905)
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AA seq
506 aa
AA seq
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MNTHTTTHKAKIRHLCSCLVLCLHLASGSVTGLCEHSVTEEHLLILRKLIMNQVQNGCSI
TYWFTERQNLSEICYIKAAFPYILVLLNTHFTYEEGSDNYNYTNTLKDMIYNIYSHECIP
HINEEIEENPQKFARMYTSLSREGLQKTAEVFQMYKRLMSKSDNPVDWNCQDEYAKNFPE
STTATYTQTTGAPDCQCSCQHPLKASSTPTASSTSPSHTQSGAYINKNESFRASEPTVSD
EAQNSTPNQIFATPPALEPFTGLHTKSEHFTEQHSLPVHEESANFIISPTPNLIYNSSNS
SIAEESEQQSITTSSELPSIPTRTVLQSETSQPSEKNNTTLISDRNPVLVLAKRSLGSRE
QETPSVTYSKLLWSWIAETKGIRKNTKVKLLEISSEETEHVEHNSPTQPQMHHHIDKPLP
GFKNISKEPDCKDLRCQKATEDRSDQRSRNLIKRHLGEKEYQFVNIPTYTMFMTSSACLL
LLFTTALFYCRKQIKDLQEEDRTIHL
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atgaacacacacacaacaacccacaaagccaagataaggcatctgtgctcctgccttgtc
ctgtgcttgcacttggcctctggttctgtaactggtttatgtgaacattctgtgactgag
gaacatctcctgattttaagaaaactgattatgaaccaagttcaaaatggatgttctata
acctattggttcaccgagcgccaaaacctgagtgaaatctgttacattaaagcagcattt
ccatacatccttgttcttttgaacactcactttacatatgaagagggttctgataactat
aactacacaaacacactgaaggacatgatctacaacatttattcccatgaatgcatccct
catatcaacgaagagattgaggaaaacccacaaaagtttgcacgaatgtacacatctttg
tccagagagggtctacaaaaaacagcagaggtatttcagatgtacaaaaggctgatgagt
aaaagtgataaccctgtggattggaactgtcaggatgaatatgcaaagaactttccagaa
tccaccactgcaacttacacccaaaccacaggagccccagattgccagtgctcttgtcaa
caccctttgaaggccagctcaactccaactgcatcatccacctctccttcccatacccaa
tcaggagcttacatcaacaagaatgaaagctttagagcatctgagcctacagtctcagat
gaagcacagaactcaaccccaaatcagatttttgcaactccgccagctttggagcctttt
actgggctgcacaccaaatcagaacactttacagaacaacattctctaccagttcatgag
gaatctgcaaatttcataatttcccccactccaaatttgatatataacagcagtaattcc
tccattgcagaggaaagtgagcaacaatcaattacaacttcaagcgaattacctagcatt
ccaacaagaactgttctccaatcagaaacatcacagccctctgaaaaaaataacacaaca
ctaatttcagataggaacccagtgcttgtgctcgccaaaagatctttaggtagcagagag
caagaaacaccatctgttacctattccaaactgctttggagctggattgctgaaaccaaa
ggaattaggaagaatacaaaagtcaaactcttagagatatcttctgaagaaacagaacat
gttgaacacaacagtcctacacaacctcagatgcatcatcacatcgacaagcctttacca
ggttttaaaaacatcagcaaggaaccagactgcaaagatttaagatgtcaaaaagccact
gaggacagatcagatcagagatccagaaatcttataaagagacacttgggggaaaaagag
taccaatttgtaaacatccctacgtacacaatgttcatgacttcatctgcatgcttacta
cttctgttcaccactgccctcttctactgcaggaaacagatcaaggatctacaagaagaa
gacaggactatacatttgtga
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