Clarias gariepinus (North African catfish): 128511330
Help
Entry
128511330 CDS
T10780
Symbol
rbm39a
Name
(RefSeq) RNA-binding protein 39a isoform X1
KO
K13091
RNA-binding protein 23/39
Organism
cgar Clarias gariepinus (North African catfish)
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cgar03041
]
128511330 (rbm39a)
Spliceosome [BR:
cgar03041
]
Common components
Common spliceosomal components
General mRNP proteins
128511330 (rbm39a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RBM39linker
RRM_occluded
RRM_5
PRP38_assoc
RBD_DEAH11
RRM_7
RSRP
Motif
Other DBs
NCBI-GeneID:
128511330
NCBI-ProteinID:
XP_053340109
LinkDB
All DBs
Position
23:16192793..16198871
Genome browser
AA seq
529 aa
AA seq
DB search
MADDFDIEAMLEAPYKKDETKSISSNGHEERSKKKKKSRSRSRSRERKRSKSRERKRSRS
QDKSRERKRSRSRDKKRSRSREKRRSRSKSRERAGRFRPAFSGLKFNGGPRGKTGPPPVI
KLSRKKSRSRSPFKREKSPVRQPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSAVGK
VRDVRMISDRNSRRSKGIAYIEFVDATSVPLAIGLSGQRLLGVPIIVQASQAEKNRAAAM
ANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIDSIQLMMDSETGRSKGYGFITF
ADAECAKKALEQLNGFELAGRPMKVGHVTERTDASTASSFLDNDELERTGIDLGTTGRLQ
LMARLAEGTGLQIPPAAQQALQMSNSMVAMAAATAAMNPGLSFNINVPTNQPLNLPSQPI
ATHCFQLSNMFDPNSENDHGWDVEIQDDVIEECNKHGGVIHIYVDKKSAEGNVYVKCPSI
PAAMAAVSALHGRWFGGKMIKAAYVPLPTYHNLFPESVQATQLLMPTRR
NT seq
1590 nt
NT seq
+upstream
nt +downstream
nt
atggccgacgactttgacatcgaagccatgcttgaggcgccctataagaaggatgagacc
aagtcaataagttccaatgggcatgaagaacggagcaagaagaaaaagaagagcagaagt
cgtagtagaagcagggagagaaagagaagcaagagccgtgagcgcaaaaggagccggagc
caggataagagtcgtgaacgcaagaggagccggagccgggacaagaaacgcagtcgcagc
cgagagaagagacgtagccgttccaagagcagggagcgtgcagggcgcttcagaccagcc
ttttctggcctgaaatttaatggtggtcccagggggaagactggcccaccgcctgtcatc
aaactaagccggaaaaagtctaggagccgcagcccattcaaacgagaaaaaagtcctgtc
agacagcctatagataatctcacaccagaggagagggatgcccgcacagttttttgcatg
cagcttgctgccagaatccggccccgggacctagaggaatttttctctgctgtgggaaaa
gtaagggatgtgaggatgatctcagacagaaactctagaaggtccaaaggcattgcctac
attgaatttgtggatgccacctctgtaccactagcaattggtctgtctgggcaaaggctg
cttggggtaccaatcattgtgcaggcttcacaggctgaaaagaacagagctgctgcaatg
gccaacaaccttcagaaaggcagtgctggacccatgagactgtacgttggctcattgcat
ttcaacatcacagaagacatgctcagagggatctttgaaccatttggccgaattgacagt
attcagcttatgatggatagtgaaacagggagatccaagggatacggctttatcacgttt
gctgatgccgaatgtgcgaagaaggcattggaacagctaaatggctttgaactggctggc
aggcccatgaaagtaggccatgtgactgaacgcacagatgcctctacagccagctctttc
ctcgataacgatgagctggaaaggactggcattgacctgggcaccactgggaggctgcag
ctgatggccaggctggctgaaggcactggtctgcagatccctccagctgcacagcaggct
cttcagatgagcaactcgatggtggcaatggcagcagctacagcggctatgaatcctgga
ttaagtttcaatattaatgtgcccacaaatcaacctctcaatctaccatctcagccaatt
gccacacactgcttccagctgtccaacatgtttgatccaaattcggagaatgatcatgga
tgggatgttgaaatccaagatgatgtaattgaagaatgtaacaaacacggtggagtgatt
catatatatgtggacaagaaatctgctgagggaaatgtatatgtaaagtgcccaagcatc
cctgctgcaatggctgctgttagtgcattacatggacgctggtttggaggtaaaatgatc
aaagcagcatatgtccctctgccaacgtaccacaatctttttcccgagtcagtgcaagct
acacagcttcttatgcctactcgccggtga
DBGET
integrated database retrieval system
