Clarias gariepinus (North African catfish): 128511551
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Entry
128511551 CDS
T10780
Symbol
cspg4
Name
(RefSeq) chondroitin sulfate proteoglycan 4
KO
K08115
chondroitin sulfate proteoglycan 4
Organism
cgar Clarias gariepinus (North African catfish)
Brite
Proteoglycans [BR:
cgar00535
]
Cell surface proteoglycans
Others
128511551 (cspg4)
Lectins [BR:
cgar04091
]
C-Type lectins
Others
128511551 (cspg4)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-GeneID:
128511551
NCBI-ProteinID:
XP_053340441
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Position
2:complement(32692587..32738913)
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AA seq
2303 aa
AA seq
DB search
MRVLHLALCAVLTLLSLPQASHGVSYFGDSYCRIDVVQDLLSFHLSLQFKTSRRSGLLLL
AAGNRDYLSLELVNGRLQTKMDMGSGEVVLSSSSGVQLNNLIDHHVSLTLQENKLTMTVD
SLFSTFVNLQAGEEHLSIDMGVFLGGVRDLDVEYLSTAVPFLRGCMSDIKFESHQFNILS
SAATHCHDTKDTCSSEFEAGGGEATSFISPDSFVSFPTWTQANTGSRNLEFLMKTTIEDA
MLLFHPGHSADFIALGMTGGFLTGVADLGGGMVILNNDKVKLDDDQWHRIRMQVDPNTFD
ITVDSQSVSVPLGGSEKLDLVGNLYLGGIQGKMKDVFRDDFLNRMEDEITSESFIGCLGE
IKVNQKDRSLQDALITKDVHVKCEGEDYDYSAYYDAEPTTASPTIVSITPAERHCLPTGD
MPEIFRNVSKLLEVTPLLVPEGGEASIDISNLNPTFNLEAAGIRQSQIIFTLQSDPWYGL
VDMNINTRRTKKFTLLDVVNKKIKYLHDGNEKFADQIQLEVVAHGSNLPECLKTPRLYIL
PVEIVPVNDIPQLSGEDIALTENGLTRLSPNLVKIADSDKRCDKLIITVTSDPNPHGYLE
NSEHPGRNLREFTCRQLKDGLIYYVHRGGSVDGLTLEVSDGNQIIHSATLRLTITQSQIS
LIRNTELHLIQGTNSTIGIQNLAVSATPQNGDIIFNVTQPLRFGELQIIGQDGVPKRVSQ
FYQSDLEQNRLMYTTTTLADLEDTETEYIHFNAQLGQATLPNNTFIIKIMPAQDVMVKIV
PLEIVAMEPGVIKKSELESMIKGKNIDLGFIRYIIWKSPTMGALMLRDRDLSDTESFTQQ
DIEAGHISYRPTIRKAFDAEDNFQFKVLAGDQYSQVYTYPISIKADSNIPVLTNERLLVL
EGNESTLSKEHLWVQSPQSTDFVYRIIQDPINGHLIRDSPPGVPRFEGAVRVFSNEDILL
NRLIYKHDGSEVSHDQFSFLVFEVNTGRSNVQMEGEEVIKGTFHIAIQSRNDYVPQRVIN
KPFHVVRNGQRLLTTDDILFKDDDFGFNDTQLVYVRVGILSGNIVSSGDTSQPLYRFTQA
DLRDGNVLFVHHGADRDLFQLQVSDGLHKTTALLEVQAGESYLHVVNNSMVVIDYGSTKT
LDTSVLGAESNMDIRSASEIIYDVNTPPKDGRIIVSGVEATRFTQEDLKKGVVSYEHNDQ
SLRSTDSFTFTVRAKDMSEKGTFRIKIFKQGYLFEPQVTANTGIIAYEGEHTVIDQDNLR
VEQADISPSEIVFSIKEHPHSGFVVKLTNDTESAVSPVLEYIQTFTQDDINMGTVLYVSA
SLQGQDMFSLDVSNGFTTVEDLKVQVDIMPQLIPVHVGNLTVKEGNAVTLSEDILNITHP
FYRSIHIEFLMEEAPQHGDMRYLDRDDDGLVAFTWDDVQQGIVSYLHDSSETTEDSFTFL
ATAFELNRRSLPIVLNITVIPVNDEAPQIRHNTGLELLVGEETEITNKALSAEDTDTPAD
KLVYNIEATKSGIIALKESPDYSIENFTQAQIDNSEVIFIHKGSESGGFSFTVTDGDHTS
PLHRFVVAVRQLTISMDVQKELLVFPGSRQVINSDILRAVTSEDGDEITYSLVRPPRLGR
VIKPNQSGQFEEISQFTQTELDAGAVYYEHQMPSESFWEVKDAVELELTSLPAAKLQHVL
PVTVSYNVTQRNESSQLWKNKGMSVVQGQSMAFKLSILDASNLLGSVPQEKRIDQDIVFE
VRQFPVHGRLTLGGDDLPRDAPYFLQDDISQGKLEYYHDDSGASSDRFSFRVWLNRRGHP
PQAVPGAVVLEGVFLISIRRRDSSPPELVSLDLLLEALQGSTTVLSKQHINTIDQDSTPD
EVRFTIIKSPTNGHIIYKDTGDRIKQFTQEEVNMGQVAFMSDGSLSEGFMEFTISDGKHR
SEPHIMHIGILAKKLVLNKVEEIQVKQADDETPITEAMLKASTGGPIEEEVLYKITNVPK
YAVVMVDRQPTSAFTQKQIREGRVSVRFTKATSSNDSFSFVARSRAANVSSSLNIIVKPL
INVAKDPLLPRGTIVLVDRKLLDATPLANKTKITPTFILTQQPKGARFIERGGSADGQPV
KSFTQRDLDEGRVALEVLNSTRDSTDKGQDQDEARFLLQARGVPPAECTLSFQTVPYDPK
GIYGATVLKVPPSVPNSDTSKADGNWPYEAGPTTTSPSSHKSPVSRRNSLWAILIPILVI
LLLLLVAGLIAYYLVRRNKTGKHNVQNAAINPKNGEVAQETFRKTDPANNIPMSTMESKD
TDPELLQHCRTTNPALKKNQYWV
NT seq
6912 nt
NT seq
+upstream
nt +downstream
nt
atgagagtgcttcatttagccctgtgtgctgtactgaccctgctaagtctgcctcaggca
agccatggagtttcatactttggggatagctactgccggatagatgtggtgcaggatctg
ttaagttttcatctgtcacttcagttcaagacaagcaggcgcagcggacttctccttcta
gccgctggaaacagagactacctgtctctagagctcgtcaatggcaggttacagacaaaa
atggatatgggctcaggggaagtggtgctgagctcctcatctggtgtgcagcttaacaat
cttatagatcatcatgtttcccttactctacaagaaaataaactcaccatgactgtggac
agtcttttttcaacatttgttaatttgcaagcaggggaggaacacctcagtattgacatg
ggtgtgttccttggaggtgtaagagacttggatgttgagtacctcagcacagctgttccc
tttctccgtggctgtatgagtgacataaagtttgagtctcatcagtttaatattttgtcg
tcagctgcaactcactgccatgacactaaagatacctgtagtagtgagtttgaagctgga
ggtggggaagccaccagctttatcagtccagactcctttgtatccttcccaacctggacc
caagccaacactggttctcgcaatttggaattcctgatgaaaactacaatcgaagatgct
atgcttctctttcatccaggtcacagtgctgattttattgccttgggcatgacaggagga
tttcttacaggtgtggcagatctgggcggaggcatggtaattctaaacaatgacaaagta
aagctggacgatgatcagtggcacaggataagaatgcaggttgatcccaacacttttgat
ataacggtggatagtcagtctgtctctgttcctctaggtggttcagaaaaactggatctt
gtgggaaatctttacttaggaggtatccagggcaaaatgaaagatgtattccgtgacgac
ttcctgaatcgtatggaagatgagataacatctgagtctttcattggctgcttaggagaa
atcaaagtgaatcagaaagacagaagtctacaggacgctctgataaccaaagatgttcat
gttaaatgtgaaggagaagattatgactattccgcctattatgatgcggaaccaactaca
gcttcaccaacaattgtgagtataacgccagctgaaagacactgtttaccaactggtgat
atgccggagatctttagaaatgtctctaagctcttggaagtcacacctctgctggttcca
gaggggggagaggcttcaattgatataagcaacctgaacccaactttcaatttagaggct
gcaggaatacgacagtcacaaataatcttcacccttcagagtgacccttggtatgggctt
gtagacatgaacataaacactaggcgcactaagaagtttactctcctagatgtggtgaac
aagaagattaaatatcttcatgatggaaatgaaaagtttgctgatcaaatccaactagaa
gtggttgcacatggctccaacctcccagagtgtttgaaaactccccgcctttacatcctc
ccagtggaaattgttcctgtcaatgacataccccagctcagtggtgaagatattgcactt
acagaaaatggactcactcgcttaagccctaatcttgtcaaaattgctgattctgataag
cggtgtgacaagttgatcatcactgttacctcagatccaaaccctcatggttacttagag
aattcagagcatcctggaaggaacctaagagagttcacttgcagacagctcaaggatgga
ctgatttactatgtccacagaggaggctcagtagatggactcaccttagaagtttcagat
ggtaatcaaattatccattcagccaccttaagactcacaataactcaatcacagataagc
ctcataagaaacactgaactacacctcattcagggcaccaactccaccatagggatacag
aacctggctgtgtctgccactccccaaaatggtgatatcatattcaatgtcacacagccc
ctgagatttggagaactgcaaattatcgggcaagatggtgtgccaaaaagagtgtcacaa
ttttatcaatctgatctggagcagaatagactaatgtacactacgacaacgttagctgat
ctcgaggacacagaaacggagtatattcattttaatgcgcagcttggacaggccactctt
ccaaacaatacattcataattaagatcatgcctgctcaggacgtaatggtaaaaattgtc
cctcttgaaattgtagcaatggaaccaggagttatcaaaaagtctgagttagaatctatg
ataaaaggaaagaatattgatttgggttttatcagatacataatttggaagagtccaaca
atgggtgccttgatgttgcgtgatagagatctgtcagatactgagagcttcacccaacag
gatattgaggctggacatatcagttacagaccaacaattcgcaaggcttttgatgctgag
gacaattttcaatttaaggttttagcaggggatcaatactctcaagtatatacttaccca
atcagcatcaaagctgactctaatatccctgtactaaccaatgagagactgttggtatta
gaaggaaatgaaagtaccctaagtaaagaacacctctgggtgcaaagcccacagtctaca
gactttgtgtacaggattatacaagaccctatcaatggacatctcattcgggactcccct
cctggtgtgcccaggttcgaaggtgcagttcgagtcttcagtaatgaagatatactctta
aacaggctcatctataaacatgatggctcagaggtcagtcatgaccaattcagctttctt
gtctttgaagtaaatacaggtagaagtaatgtccagatggaaggagaggaggtgatcaaa
ggaacattccacatagcaattcaatccagaaatgattatgtacctcagagggtcattaat
aagcccttccatgtggtaagaaatggtcagcgtttactgaccactgatgacattctattc
aaggatgacgactttggcttcaatgacacccaattggtttacgtccgagtgggaattctg
tcaggaaacattgtgtcctctggagacacttcacaacccctataccgttttacacaggca
gacctaagggatgggaacgttctatttgtccatcacggtgctgaccgggatttgttccag
cttcaagtttccgatgggttgcacaagaccacagcactgctagaggtgcaggcaggtgaa
tcatacctgcatgtagtcaacaacagcatggttgttatagactatggaagtaccaagaca
ctggatacaagtgttctgggtgcagagtccaacatggacattaggagcgcttcagaaatt
atttatgatgtaaacacccctcctaaggatggcaggataatagtcagtggtgttgaggct
actcgcttcactcaggaagacctcaagaaaggtgtggtttcctatgagcacaatgatcaa
agcctcaggtctacggactcgttcacctttactgtgcgtgcaaaagacatgtctgagaaa
ggcacttttagaattaagatcttcaagcaaggctatttgtttgagcctcaagtaaccgct
aatacagggatcattgcatatgagggtgagcatactgtcatcgatcaggataatctcagg
gtggagcaggctgacatctcacctagtgagatagtgtttagcattaaagaacatccacat
tctggcttcgtggtcaaactgaccaatgatactgagagcgcagtgtctcctgtgctggaa
tatatccagacttttacacaagatgacataaatatgggcacagtcttatatgtctcagcc
tcactacagggtcaagacatgttctcactagatgtcagtaatggctttacaacagtcgag
gatctaaaggtacaggtggacatcatgccccagctcattcctgtccatgtggggaacctc
acagtgaaggaaggaaatgccgtgactctttccgaggacattctcaacatcactcaccca
ttttatcggtccattcatattgaattcctcatggaggaagcacctcaacatggagatatg
agatatctggacagggatgatgacgggcttgtggcattcacctgggacgatgtgcagcag
ggaatagtctcctatcttcatgacagctcagagaccacagaggacagcttcactttctta
gccactgctttcgagctaaaccgccgcagcctccccatcgtcctcaacatcacggtgatc
cctgttaacgacgaggcaccgcagataagacacaacacgggcctggagcttcttgttggg
gaagaaacagaaatcactaacaaagccttaagtgcagaagatacggacacccctgcagac
aagctggtttacaacatcgaggcgaccaagagtggaatcattgctctgaaagagtcacct
gattacagcattgaaaatttcacccaagctcagatcgacaacagcgaggtcattttcatc
cataaaggatctgaatctggtggttttagtttcacagtgacagatggagaccacacatca
cctctccatcgcttcgtcgttgctgtccgacagctgacaatctccatggatgtacagaaa
gagcttttggtctttcctggctccagacaagtcatcaatagtgatatcctgcgagcagtg
accagtgaagatggagatgagatcacatattctctagtgaggcctccacgtctaggacgg
gtcattaagcccaatcagagtggacaatttgaggaaatcagccaattcacacaaaccgag
ttggatgctggtgcagtgtattatgaacaccagatgccatcagagtccttctgggaagta
aaagatgctgtagaacttgagctcacatcactaccagcagcaaagctccaacacgttctc
cctgttacagtgtcgtataatgtcacccagcgcaatgagtcttcacagctatggaaaaac
aaaggtatgtcagtggtgcagggacaatctatggcatttaaactctccattctggatgca
tccaacttattaggcagtgtaccacaagaaaaacggatagaccaggacatcgtttttgag
gtacgacagttccctgttcatggccgactcacacttgggggtgatgatcttccccgggat
gcaccctatttcctgcaagatgacatcagtcaaggaaagctggagtactaccacgatgac
tcaggagcatcatcagacagattctctttccgtgtttggctgaaccgccgtggtcaccca
cctcaggcagtaccaggtgccgtggtgttagagggggtctttttgatctcaatcagaaga
agggactccagccctcccgagctggtcagcctggacctgctgctggaggcactgcaagga
tctactactgtactgtccaagcagcacatcaacactatagaccaagacagtacaccagat
gaggtcagattcacaatcataaagagtcctactaatggacacatcatctacaaagatact
ggagacaggatcaagcagtttacacaagaggaggtaaacatgggccaggtggcattcatg
agcgatggtagcttgtctgaaggttttatggagttcactatctccgatggaaaacaccgg
tcagaaccacacatcatgcatattggcatcctagctaagaaacttgtgcttaataaggtg
gaggagatacaagtcaagcaggcagatgatgagactcctattacagaggccatgttgaaa
gcatccacaggaggcccaatagaggaagaagtgctttataaaattacaaatgttcccaag
tatgcggtagtaatggtggacaggcaacccacttctgcctttacccaaaaacagattagg
gaaggaagagtgagtgttcgcttcaccaaggctacttcatcaaatgacagtttttcattt
gtagcccgcagcagagcagctaatgtttcctccagcctcaacatcatagtaaagccctta
ataaatgtggccaaggatcccttacttccacgaggcactatagttctggtggatagaaag
ctattagatgctaccccacttgccaacaagaccaaaattacaccaaccttcattttgacc
cagcagccaaaaggggcacggttcattgaaagaggaggatcagcagacggccagcctgtg
aaatcctttacccagagagatctagatgagggacgagtggctcttgaggtcttgaactcc
actagagattcaacagataaaggtcaggatcaggatgaggctcgcttcctcctccaggca
cgtggagttcctccagcagagtgcacactttccttccagactgtgccttatgaccctaaa
ggaatctatggtgctaccgtacttaaggtccccccatctgtgcccaactctgacacaagt
aaagcggatggaaactggccatatgaagcaggtcccaccacaacctcccccagctcccat
aaatcccctgtctctagacggaattcactatgggccatccttatccccatattagttatc
ctccttcttctacttgtagccggtctgatagcatactatctagtgcgtcgcaacaaaaca
ggaaagcacaatgtccagaatgctgccatcaatccaaaaaatggggaggtcgctcaggaa
accttcagaaaaaccgatccagcgaataacatccccatgtccactatggagtcgaaagac
acagatcctgaattactgcagcactgtcggacaacaaacccagccttgaaaaagaaccag
tactgggtatga
DBGET
integrated database retrieval system
