Clarias gariepinus (North African catfish): 128511664
Help
Entry
128511664 CDS
T10780
Name
(RefSeq) collagen alpha-3(IX) chain-like
KO
K08131
collagen type IX alpha
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar04510
Focal adhesion
cgar04512
ECM-receptor interaction
cgar04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
128511664
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
128511664
09142 Cell motility
04820 Cytoskeleton in muscle cells
128511664
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
cgar00535
]
128511664
Proteoglycans [BR:
cgar00535
]
Extracellular matrix (ECM) proteoglycans
Others
128511664
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Laminin_G_3
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
128511664
NCBI-ProteinID:
XP_053340595
LinkDB
All DBs
Position
2:7995122..8035732
Genome browser
AA seq
942 aa
AA seq
DB search
MRSFSATRRWAWQRMMAECMTRLVLLAMLCAPALTQLDLNRLDGDTVCPPMQNGQDDLPG
FDLITQLQLDATSLKGVRKVEGSTSSQLAYRLDREANFQVPTRPTFPRGFPTEYSFMTTF
RMIKNTVNKVWNLWQVVDEDGVKQVGMRLNGDQQALEFFLTTLDGDLQTVTFPGLSVLFN
TKWHKIMIAVESEMVTLYVDCQPVDQKPIKDKGYVSTDGETLFGRLDTDPSSSVVFEVQW
MLIHCDPKRPQRESCTELPVAEMYANAEPDPKPIPGPAGPPGPAGPRGPTGEDGRDGRDG
IPGTPGTPGATGSKGEKGEIGLPGQRGLQGLPGPSGPMGPMGPRGPIGERGLQGFPGPAG
PPGPETTGAPGPPGKPGIPGNEGNIGPEGQPGPRGSNGLPGPPGPPGPPGPPGTGGNPEG
SGETCQTVCPTGPQGLPGLPGIKGHRGLPGADGLPGIAGEKGDRGSVGEPGPPGRPGEDG
QRGPIGYPGEHGDKGDRGPPGFNGIPGPTGPPGSPGVEGIRGRDGPQGPKGDEGAAGSQG
PTGATGPKGETGNPGRNGQDGEPGLNGEKGEPGLPGASGLRGIVGIPGLPGKQGIVGPVG
QKGEIGVEGPLGPIGLPGKPGEQGVPGDDGLPGAKGSTGEPGKPGAIGPTGLQGDPGEKG
DRGVMGPHGIKGHKGHKGDQGAVGPVGQKGSEGAPGIPGSTGGKGDQGPSGIPGIKGDRG
EKGQRGATGAEGRPGQPGHEGLMGPQGPPGLEGDRGIQGPPGPRGLPGPKLNDEKIRQIC
SAVVEEHLDAYKKELAKKPSPLGAPGTPGPAGPPGPPGPAGAAGASGTMGPPGPQGPPGF
YGLPGKQGPKGDSGPKGDKGDNGVGVQGAPGEPGVQGPPGKPGIGKDGQNGARGEAGTPG
IPGTPGSRGPAGPPGMCDPSDCFRPQPLYMMSGKKPISVKGP
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atgcgcagcttcagcgctacacggaggtgggcgtggcagcgaatgatggcggagtgtatg
actcgtcttgttctcctcgccatgctgtgtgctcctgctctcacacagctggatttaaac
agacttgatggcgacaccgtgtgcccaccaatgcagaacggacaagatgaccttccaggc
tttgacctgatcacacagttgcagttggacgccacatcgctgaagggtgtgagaaaggtg
gaaggctccacgtccagtcagttggcatacagacttgaccgtgaggctaacttccaggtc
cccaccagaccgacattccccagaggctttccgacagagtactcgttcatgactacattc
cgcatgatcaagaacaccgtgaacaaagtgtggaacctgtggcaggtagtggatgaggat
ggcgtgaagcaggtggggatgcgtctgaatggagaccagcaggcccttgagttcttcctc
accaccttggatggagacctacagactgtcaccttccccggcctctctgtcctcttcaac
accaaatggcacaaaatcatgatagccgtagagagcgagatggttacactgtacgtggac
tgccagcctgtcgaccagaagcctattaaggacaagggctacgtcagcacagatggagag
acgctcttcgggagactggacacagatcccagcagctctgtggtgtttgaggttcagtgg
atgctgattcactgcgacccaaagagacctcagagagagagctgcactgaacttcctgtg
gccgagatgtatgccaatgctgagcccgaccccaaaccgatccctgggcctgctggacca
ccaggtcccgcaggacctcggggacctactggagaagacggtcgcgatggtagagatggt
attccaggaactccaggcactcctggtgcaactggcagcaaaggggaaaagggtgaaatt
ggtttgcccggtcagagaggactacaaggacttccaggacccagtgggccaatggggccg
atgggaccgagaggaccgattggggaaagaggtctgcaaggtttcccaggtccagctgga
ccccctggacccgagaccaccggagcgcctggacctcctggtaagcccggtatcccagga
aacgagggcaacattgggcccgagggccaacctggacccagaggatccaatgggcttcca
ggacctcctggcccacccggaccccccggcccacctgggaccggtgggaatccagaagga
agcggggagacttgtcagactgtatgcccgaccggacctcagggtctcccaggccttcca
ggaatcaagggacacaggggtctcccgggagcagatggacttccaggtattgccggtgaa
aagggtgatcgaggatcagtaggagagcccggtcctccgggacgtccaggagaagatggt
cagagagggccgatcggataccctggagaacacggtgataaaggagatcggggtccccca
ggttttaacggcattcccggacctacaggacctcctggatctccgggtgtcgaaggtatc
cgaggacgcgatggacctcaggggcctaaaggtgatgagggtgcagcaggttctcaaggt
cctacaggtgccaccggtcctaaaggagagactggtaacccaggcagaaatggacaggat
ggagaaccgggtcttaatggagaaaaaggagaaccgggactgcctggagctagtggactc
agaggcattgtaggaattccaggtttaccaggaaagcaggggattgtgggaccagtgggt
cagaagggtgagattggagttgaaggtccactgggtcccattggtcttcctgggaaacca
ggggaacagggagttcctggagatgacgggctgccgggagctaaaggatccacgggggaa
ccaggaaagccgggtgcgatcgggccgacgggtcttcagggagacccgggagagaaagga
gaccgtggggtcatgggtcctcatgggatcaaaggtcacaaaggtcacaaaggagatcag
ggtgctgtaggtccagttggtcaaaaaggaagtgagggagctccaggtatcccgggcagt
acaggaggtaaaggtgaccagggtccttcaggcattcctggaatcaagggagatcgagga
gagaaaggacagagaggagcgaccggtgctgaaggccgtccaggacaaccaggacacgag
ggactcatgggacctcagggacccccaggcctggagggggacagaggaatacagggacca
ccgggacctcgaggacttcctggtcctaaactgaacgatgagaagattcgtcagatctgt
tccgctgtggttgaagaacatctggatgcttataagaaagagctggcgaagaagccttca
cccctcggtgccccgggtacccccgggcctgcgggtccacccggaccacctggacctgct
ggggctgctggagcctctggaaccatgggacctccgggccctcaggggcctccagggttc
tacgggttacccggaaaacaaggacccaaaggtgactctgggccaaaaggagacaaagga
gataatggtgttggagttcaaggggctcctggagagccaggtgttcaaggacctcccggg
aagcccggcatcggtaaagacggccagaacggcgcccgaggagaagcgggcactccgggt
atcccaggcacgccgggcagcagaggacctgcaggtccacccggcatgtgtgacccctca
gactgcttcagaccccagcctctttacatgatgagcgggaagaagcccatcagcgttaaa
gggccgtga
DBGET
integrated database retrieval system
