Clarias gariepinus (North African catfish): 128511776
Help
Entry
128511776 CDS
T10780
Name
(RefSeq) E3 ubiquitin-protein ligase RNF43
KO
K15694
E3 ubiquitin-protein ligase RNF43 [EC:
2.3.2.27
]
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
128511776
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cgar04121
]
128511776
Enzymes [BR:
cgar01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
128511776
Ubiquitin system [BR:
cgar04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
128511776
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ZNRF_3_ecto
zf-RING_2
zf-RING_11
zf-C3HC4_2
zf-C3HC4
zf-rbx1
zf-RING_5
zf-RING_UBOX
ABC2_membrane_2
zf-ANAPC11
Motif
Other DBs
NCBI-GeneID:
128511776
NCBI-ProteinID:
XP_053340732
LinkDB
All DBs
Position
24:7973048..8069422
Genome browser
AA seq
798 aa
AA seq
DB search
MRLAAQRLAGLWPWLFTAVLQVALGHAGLEVAATRALIKVTLLNPKATVITLEGVFAGKI
SGFAEGKLMQSHPLSLCNTSEDERQESYFISIVKLESPESKVPQCMPLRDKAQLALKRGA
QAVIFDISDDVKAANELNYDFLKPVVMVKAADADELMGLVNKNEEAKVEINIMMEAPKWS
HYEVGILLTVVLVVLAIIMIFAFRARCRSNRTWDSVHQQTMRAISRLETRTYSSQGCSGG
SHHPRVGRGSNSSSSSGPMCAICLEEFLDGQDLRIISCAHEFHKDCVDPWLLQHRTCPLC
MHNIMAGAEASGRQPQRVRGHPPPEHSQAFLHSHPQHYLASQSFPQHPIPFSLRPHYPRT
LSGPYPQLGTYSSSPPYHTRLVNASCSYHLAPDGHRARPRHSCRNIGHHYTSPRRPCHHC
HTNRTRHQNHHQNPRHGGSQGLQDEGSCSGASYGTERSGYFPDGPGSDSSSGPCHGSSSD
SVLNCTDVSLQGVYGSFSTFRSSLSSEYDPFVYHSAGSEGPTGSTRPRSLDSGVNQTSGG
LGFEEPQQQQAVFSHVHYHRHRHHYYEEGDPGQGPGRGSDEEQGTSGVAAGNSPMGKDST
LCQGAHVACHCPKTDPINRCGPPGGMENQDAAPSSSNSSLPGTSLPTSAPACCHPGHSHC
RKTTSCSLEASTPAMPAVHFHQRVDLQDDCSIHIHYGQSPTGYCCPPPLGATSTLLPVPV
ILDSSGLAEWPCCRGAQRGWQKQVQQAHSEPQLMVTGPLLDTPLCRGHHSAGHELPTEIC
LYCQSVRNNQGSEEESGV
NT seq
2397 nt
NT seq
+upstream
nt +downstream
nt
atgaggctcgccgcacagcgcctggccgggctctggccgtggctgttcacggccgtcctg
caggtggcgctgggccatgcgggccttgaagtggcagcgacccgcgccctcatcaaggtc
acgctgctcaatcccaaagccacggtcatcaccctggaaggggtgttcgctggaaaaatc
agcggattcgctgagggtaaactcatgcagtctcacccgctgtctctgtgtaacaccagc
gaggatgagaggcaagaaagctacttcatcagcattgttaagctggagagtccggagagc
aaagtgccccagtgcatgccacttcgggataaggctcagctggccctaaagaggggagct
caggctgttatttttgacatcagtgatgatgttaaagctgctaatgagctgaattatgac
ttcctgaagccggtagtgatggtgaaggcagcggacgctgatgagctaatgggactggtt
aataagaacgaggaggccaaggtcgagatcaacatcatgatggaggcaccgaaatggtcc
cattatgaagtgggaatcctcttgactgttgtcttggttgtgctggcaatcattatgatc
tttgccttccgcgctcgctgcaggtccaacagaacttgggactcggtgcaccagcagacc
atgcgagccattagcaggctggagacacgtacctacagctctcagggctgctcaggagga
tcccatcatccacgtgttggccgagggtcaaacagcagctccagttctggtcctatgtgt
gccatctgccttgaggagttcctggatggacaggacctaaggatcatctcatgtgcacat
gagttccataaggattgtgtggacccttggctgcttcagcaccggacctgtccgctttgc
atgcacaacataatggcaggtgcagaggcaagtggccgtcagcctcagcgagttcgtgga
catccgcccccagagcacagccaggcttttcttcactcccacccacagcattacctggct
tctcagtctttcccccagcaccctattcctttctctcttagacctcattacccccgaaca
ctctcggggccctatccccagctgggaacctatagtagctcccctccttaccacactcgc
ttagtgaacgctagctgcagctatcatcttgcccctgatggtcaccgtgcccgacctcga
cacagctgccgcaacatcgggcaccactacacatcgccacgtcgaccatgccaccactgc
cataccaacaggacgaggcatcaaaaccaccatcaaaacccacgccacggaggctctcag
gggctccaggatgaaggcagctgctcaggggccagctatggcaccgaacgtagtggctac
ttccctgatggacccggcagtgactcaagctcaggcccatgccacggctcatccagtgac
tcggtactcaactgcacggacgtgagcctgcagggtgtctacggtagcttttccactttt
cgtagttcgctcagcagcgagtacgacccatttgtctaccacagtgccggttctgaaggt
ccgacaggtagtaccaggccccgatctctagattcaggagttaatcagactagtggaggg
cttgggtttgaagaaccacagcagcaacaggctgtattcagccatgtgcactaccataga
cacagacaccactattacgaagagggcgatcccggccaaggaccaggaagaggctctgat
gaggagcaagggacttcaggagtagcagcaggcaattctcccatgggtaaggactcaact
ttgtgtcagggggcacatgttgcctgccattgccccaaaacggaccctataaacaggtgc
ggacctcctggtggaatggagaatcaggacgcagctccttcatcctccaattcttcctta
cctggcacctcactgccgacctctgcaccagcctgctgccacccagggcattcgcactgc
cgaaaaaccaccagctgcagtctagaggcttccactccagccatgccagctgtgcacttc
catcagcgagtggatctacaggacgattgcagcattcacatccattatggacaaagtcct
acaggttactgctgcccccctcctttgggtgcaacgtccacactgctgcctgtacctgta
atcctggactcgagtgggctggcagagtggccctgctgcaggggggcacaaagggggtgg
cagaagcaggtgcagcaggctcactctgagccacagcttatggtgacagggcctctcctg
gacacacctctatgcagagggcatcacagtgccgggcatgagttgcccacagaaatttgt
ctctactgccaaagtgtacgcaataatcagggatcagaggaagagtctggtgtttaa
DBGET
integrated database retrieval system
