Clarias gariepinus (North African catfish): 128512011
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Entry
128512011 CDS
T10780
Symbol
ythdc1
Name
(RefSeq) YTH domain-containing protein 1 isoform X1
KO
K20100
YTH domain-containing protein 1
Organism
cgar Clarias gariepinus (North African catfish)
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cgar03041
]
128512011 (ythdc1)
Spliceosome [BR:
cgar03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
128512011 (ythdc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
Motif
Other DBs
NCBI-GeneID:
128512011
NCBI-ProteinID:
XP_053341080
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All DBs
Position
24:4658974..4673388
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AA seq
714 aa
AA seq
DB search
MADRRDDKDGELNVLEDILTDAPDQDDELYNPESEHDLNEKKGSKRKNERGDSHDTKRLR
SSGHSTRQPVKRSLSSGRAIGKKMTSLRGRHHPDDFYEDRKNHSGRGRAPRADLSKGHSR
EHQRRIKPLMPELNEKLRRTSEESAGRVSRSSKEDEEEEVRSEEYASEQDTGSSAGSSEG
NRSDAEEEEVMEDEDEEGETGPDDDEEEDEEEEVEGEEGEEEDEDYELEDGDQQDGNEQN
DYDTRSEASDSQSESVSFSDGKSVYSGSGSEASDKERKEKKHARGISPIVFDRSGSSASE
SCTGSEKKHEKLPSSVRAVSKDQTSKLKYVLREARYFLIKSNNHENVSLAKAKGVWSTLP
VNERKLNAAFRAARSVILIFSVRESGKFQGFARLSSESHHGGSPIHWVLPAGMNAKMLGG
VFKIDWICRRELPFTKSAHLTNSWNEHKPVKIGRDGQEIETNCGLQLCMLFPPDESIDLY
QVIHKMRHKRRTHSEPRSRGRPPHREPAPRDLGRRRPEEYDMHNRKRPRIDYPPEFQQRP
GFMQDPRNQPVDRRFSGVRRDVFLNGSYNDYMREFHHSIGPPPPWQGMAPYPGMDQPPHH
PYYQHHPPPPQTHPQYSGHHPMPHDARFREKRVVRSFSSSVHDYDMRVDDFLRRTQAVVS
GRRSRPRERERQRERERPRDARRERERERGRERDRDRDRIRDRDREKERGRYRR
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atggccgacaggcgagacgacaaagatggagagcttaacgttctggaagatattttaact
gatgctccagatcaagatgatgagctttacaaccctgaaagtgaacatgacctgaacgaa
aagaaaggttcaaagcgaaagaacgagcgtggagacagccacgacacaaagcgcctacga
tcttctggccactccacaaggcagccggttaaaaggtccctatcttccggcagagccatt
gggaaaaagatgaccagtctgaggggcagacatcaccctgatgacttttatgaagacagg
aaaaaccactctggcagaggcagagcgcccagggctgatctctccaaagggcacagcaga
gaacaccagaggaggatcaaaccactgatgccggagctgaatgagaagctgaggaggaca
agtgaagagagcgcaggccgtgtcagtcgctcctccaaagaagatgaagaagaagaagta
cggtcggaggagtacgcttccgagcaggatacgggaagttccgcgggctcctctgaaggc
aaccgttctgacgctgaggaagaggaggtgatggaggatgaggacgaggaaggagagacg
ggcccggatgatgatgaggaagaggatgaggaagaggaagttgagggggaagaaggagaa
gaggaagacgaagactatgagttggaggacggcgaccagcaggatggaaacgagcagaac
gattacgacacacgcagcgaagccagcgactctcagtcagaatccgtgtccttctctgat
ggcaagtcggtgtactctggctcaggctccgaagcctcagataaggaaagaaaagagaag
aagcacgctagagggatatcaccaatcgtttttgatagaagtggaagctcagcttcagaa
tcatgcacaggctcggaaaagaagcacgaaaagctgccatcgtccgtccgtgcagtaagt
aaagatcaaaccagcaagctgaagtatgtcctcagagaagctagatacttcctgattaag
agcaacaaccatgaaaatgtttctcttgctaaagcaaagggggtgtggtcgaccctgccc
gtgaacgagaggaagttgaacgcggcatttcgcgcggctagaagtgtcatacttatattt
tccgtccgggagagtgggaaatttcaaggttttgctcgactctcgtctgaatctcatcac
ggaggttctcctatccactgggttctgcctgcgggcatgaacgccaagatgcttggagga
gtttttaaaatcgactggatttgcaggcgggagttaccttttacaaagtcagcacacctt
accaactcctggaatgaacacaagcctgtaaagatcggacgtgatggacaggagatcgag
accaactgtggcctgcagctgtgcatgctcttccctccagacgagagcattgacttgtat
caggttattcataaaatgcgccacaagaggaggacgcactcggagcctcgttcccggggc
cgccccccacacagggagcccgccccccgagacctgggaaggcgtcgtccagaggaatat
gacatgcacaacaggaagcgacccaggattgactatcctcccgagttccagcagagacca
ggttttatgcaggacccacgcaatcaacctgtggacaggcgcttctcaggtgtaaggaga
gatgtgttcctcaatggctcttacaatgattacatgagagagttccatcacagcattgga
cctccacctccatggcaagggatggcaccatatccgggtatggatcagcctcctcatcat
ccctattaccaacaccatcctcccccgccccagactcacccacagtactcaggtcatcat
cccatgccccatgatgcccgctttagggagaaaagggttgttcgttccttttcctccagt
gtgcacgactatgacatgcgcgtggacgacttcctgaggcgcacccaggcagtggtgagc
ggtcgccgaagccggcccagagaacgcgagcgtcagagagaacgcgaacgaccacgagat
gcacggagagagcgtgagagagagcgaggccgcgagcgtgatcgtgacagagaccgtatc
agagaccgtgaccgagagaaagaacgaggtcgctatcgcagataa
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