Clarias gariepinus (North African catfish): 128512310
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Entry
128512310 CDS
T10780
Name
(RefSeq) transcriptional regulator ATRX-like
KO
K10779
transcriptional regulator ATRX
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar04110
Cell cycle
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
128512310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cgar03000
]
128512310
03036 Chromosome and associated proteins [BR:
cgar03036
]
128512310
Transcription factors [BR:
cgar03000
]
Eukaryotic type
Zinc finger
Cys4 GATA-factors
128512310
Chromosome and associated proteins [BR:
cgar03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
128512310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
ADD_ATRX
Helicase_C
ATRX_C
HDA2-3
Motif
Other DBs
NCBI-GeneID:
128512310
NCBI-ProteinID:
XP_053341494
LinkDB
All DBs
Position
24:24564241..24588175
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AA seq
1792 aa
AA seq
DB search
MSAEVLRPEPVAGGSRGSGGKLGLLINKLHTFLAVSAEQGSEHSLPGHWSGAMAKEFIEQ
QQAVARAAEEASEARTSAARSRRKPLVVTKHSGLNESDASSESGMEDVLSVNSSEPDSTC
LPKGTVFVLPEPVANEVRDEFRGPEFRSKRVKQNKDFSDKRRGGCDIERVNCTACGQQVN
HFQRDSVYQHPALKVLICKSCFKYYMSDDISKDAEGMDEQCRWCAEGGSLIGCDYCSNAF
CKKCVLRNLGRRELSAILEEERKWYCYVCSPEPLMDLVLACDSVLQNLEKIWARKRANVG
GGARGKQRGGRGGAGAGCPLSTAPSRGLCDRMQRVVDMTTSLNRSFVDFMQSEKDEEASE
EEDVDRAKRLMMFRTILQDLRQAHTALQEALDRELYGGKRETQRQRAKPRQRKPRAPRGS
AVTKELVVKLTPVPMETSVSHDTNDGASSVSATSVNMTEENTQMKEEEEKEEKAETMEGR
ADGMVEKDEVKVEEEHEGKGGAPIEEENTEDEDEDDDEPEMAEENKRSPRVKTTPRRRRS
DATHAGLEEEEEEDSDSDEVPAVLLQTATAATSEDEGGVDSDGGGADTNQEVRKQCLFGL
VKTTPPCQDRTSRKRKLKERSSSSSSSSSSSATEATKSGSKVRRSVGLPHKVAKTTVDSE
SSSSDQETNSSDSDESDQKIKPLSDVTLMGSVAFQQSSGDEVDVCPAPVVLDEDDVENRI
AKKILLAKIQADFTSSSDQDDTSDGDDDESEDEEGVTKSSRTKEDEEKNDDEAEETEVTD
NSSDSDDPAKPTQSRHHLLRCRLTPSEPAPKDDADKPVNRLRRRRKTPTSKMIVDSSESS
SSEESALSETISQSEDEDGSAVKQKVTVSDAEPHTPPRKNGADGHSDADGLNAEECTSPT
KGRKKIRRILGVGQLAKETQEALREEEERRKRLAERERQRRQEEEEEEESREQARDDSEV
MIVAETPAPRPVPLVLELDDATRECLVQVDTHLLRKLKPHQRKGVQFMWDSCCESIAKVK
SSPGSGCLLAHCMGLGKTLQTITFLHTVLTCQWVELKTALVVCPLNTALNWRAEFDKWQR
GITGKKVEVMELVTVKAVCSRVNALTSWYRRGGVMILSYELYRTLTHRDQAKYGKQQESL
RRLLQDPGPDIVVCDEGHVLKNETTGICKAMRSIRTRRRIVLTGTPLQNNLSEYHCMVSF
VKQNLLGSLREFRNRFINPIQNGQCADSTPSDVRLMKKRVHVLHALLAGCVQRQDYSVLT
SFLPPKREYVLSVRMTPLQCRMYRHYLQNYTAEGRGVNSLFQDYQILSLIWTHPWCLQLS
DLNKGNKAKGEEPTSETMVTGQKSKETKQQNHNERGTNLVETTPEEERSVLSGPPAGWYK
EFVSNVDAEVLGHSGKLMLLMEILRCAEQLQDKVLVFSQSLVSLDLIETFLELADRAKKE
GKARVYNGQRSWERHKDYYRLDGSTTATARKKWAQEFNNVRNTRCRLFLISTRAGSLGIN
LVAANRVVVFDASWNPTYDIQSMFRVYRFGQKKLVYVYRLLAQGTMEQKIYERQVAKQSL
SSRVVDQQQIQRHFTQSQLSELYRFQPDVRGKNHTVEPPDKVLATLLQQCGRSIVSFHEH
DSLLDHRVEEELSVEERKEAWEEYKLEETTQTHSRASIDGELWKKSRQELEVMLKKGRLE
VQKAAQNIKQRSLDYFEKEVMKQHPLVDTDVIRQRAAQAYERFEQERKFRIENYQHMLNT
QQKLILSIQQILAERQGTRAPPAPSTPFVSSRLKVGGSSSASPSAPPAAPLH
NT seq
5379 nt
NT seq
+upstream
nt +downstream
nt
atgtccgccgaggtgctcaggcctgagcccgtggccgggggaagcaggggcagcgggggt
aaacttggactcctgatcaataagctgcacacattcctggcggtttcggcggagcagggc
agcgaacacagcttacccgggcactggagcggtgcgatggccaaagagtttatcgagcag
cagcaagctgtagcgcgagccgctgaagaggcctcagaggctcggacctccgcagctcgc
tccagaaggaagcccttggtggtgacgaagcacagcggcctaaacgagtcggatgcttcc
tctgagagcggaatggaggacgtgctgtctgtcaactccagtgaaccggactcaacctgc
ctgcctaaaggtacagtgttcgtgctcccggagccggtggctaacgaagtccgtgacgag
ttcagaggtccagaatttcgcagcaaacgagtgaaacaaaacaaagacttctcagacaaa
cggagaggaggctgtgatatcgagcgagtaaactgtacggcctgcggtcagcaggtgaac
cacttccagagagactcggtgtaccagcatcctgcactcaaagtgctcatctgcaagtcc
tgttttaagtactacatgagtgatgacatcagcaaagacgcagagggaatggacgagcag
tgcaggtggtgtgcggagggaggcagtttgattggctgcgactactgcagcaacgctttc
tgtaagaaatgcgtgctgcggaacctcgggcggcgcgagctgtcggccatcttggaggag
gagcgcaaatggtactgttacgtgtgcagccccgagcccctcatggacctggtgctggcc
tgcgactcggtgctccagaacctggagaagatctgggctcgcaaacgggccaacgtaggg
ggcggggctcgcgggaagcagcgaggcgggcggggtggtgcgggggcggggtgtcccctc
agcaccgcgccctcgcggggtctgtgtgaccggatgcagcgtgtggtggacatgacgacg
tcgctgaaccgctcgttcgtggacttcatgcagagcgagaaggacgaggaggcaagcgag
gaggaggacgtggaccgagccaagagactcatgatgttccggaccatcctgcaggacctg
cgccaggcacacaccgccctgcaggaagcgctggatcgggagttgtatggggggaaacgg
gagactcagaggcagcgcgcgaaacctcgtcagcggaaaccccgggctccgaggggctcg
gccgtcacgaaggaactggtggtgaagctgacccccgtccccatggagacctctgtgagt
cacgacactaacgacggcgctagctccgtcagcgccacgtctgtaaatatgacggaggag
aatacacaaatgaaggaggaggaggagaaagaggagaaggcggagacaatggaaggacgg
gctgatgggatggtagaaaaagacgaggtgaaggtggaggaggagcacgaggggaaagga
ggggcgccgatagaggaggagaacaccgaggacgaagacgaggacgacgacgagccggag
atggcggaggagaacaagcgatctcctcgcgtcaagacgacgcctcgacgtcgacgctcg
gacgccacgcacgccggcctggaggaggaagaggaggaggattccgactcggacgaagta
cccgccgtgctcctgcagaccgccaccgccgccaccagcgaagacgagggtggggtcgac
agtgatgggggaggggccgacaccaaccaggaggtcagaaagcagtgcctcttcggcttg
gtcaaaaccacgcccccttgccaagaccgaacatcacgcaagaggaaactgaaggagagg
tcctcgtcttcgtcgtcttcttcgtcctcttcggccactgaagcgacaaagtccgggtcg
aaggtcagaaggagcgtggggcttcctcacaaggtcgccaagacgacggtggacagcgag
agctcgtcgagcgatcaggaaacgaacagcagcgactcggacgagtcggaccagaagatt
aaaccgctgagtgatgtcacactgatgggttcagtggcgttccagcagtcttctggagac
gaggtggacgtgtgccccgccccggtggtgctggacgaggatgatgtggagaatagaata
gctaaaaagatcctgttggccaagatccaagccgactttacgtccagctctgatcaggac
gacacctcggacggcgacgatgatgaatccgaagatgaggagggtgtgacgaagagcagt
aggacgaaggaagatgaggagaaaaacgatgacgaagctgaagaaaccgaggttacagat
aacagctccgactcggacgatccggctaaaccgacgcaatcgcgtcaccacctgctgcgc
tgccgtctgaccccgtcggagccggcgccgaaagacgacgcggataaacctgtcaatcgg
ctgcgaaggaggagaaaaacacccacgagcaagatgatagtcgatagcagcgagtcatcc
agtagcgaggagtcggcactgagtgaaaccatcagccaatcagaagatgaggacggcagc
gccgtgaagcagaaggtcacggtctctgacgctgaacctcacacgcctcccagaaagaat
ggcgcggacggtcactccgatgcggacggtttaaacgcggaggagtgcacgagcccgacg
aagggccgcaaaaagatccggaggatcctgggtgtgggtcagctggcgaaggagacgcag
gaggcgctgagggaggaggaggagaggaggaagaggctggcggagagagagagacagaga
agacaggaggaggaggaagaggaggagagcagagaacaagcacgcgacgactcggaggta
atgatcgtagctgagacccctgctcccagacccgttcctctggtgctggagctcgacgat
gcaacacgggaatgtctggtgcaggtggacacacacctgctgaggaaactcaaacctcac
caacggaaaggtgtgcagttcatgtgggacagctgctgtgagtccatcgccaaggtcaag
tcgtctcctggttctggctgcctcctcgcgcactgcatgggcctcgggaagactctgcag
acaatcacgttcctgcacacggttttgacgtgccagtgggtggagctgaagacggcgctg
gtggtctgtcctctaaatacagcgctcaactggagagccgagttcgacaagtggcagcgt
ggcatcaccgggaagaaagtggaggtgatggagttggtgacggtgaaggcggtgtgttct
cgagttaacgctctgaccagttggtacaggagaggaggagtgatgatcctgagttatgaa
ctgtaccgcactcttacacacagagaccaggccaaatacggcaaacagcaagagagccta
cgccgattgctgcaggacccggggccagacatagtcgtgtgtgacgaaggtcacgtcctg
aaaaacgagactactgggatctgtaaagcgatgcgctccatccgcacgcggcggcgaatc
gtcctgacgggaacgccgctccagaacaatctttcagagtaccactgcatggtgagtttt
gtgaagcagaacctcctgggttccctgcgtgagtttcggaaccggttcattaaccccatc
cagaacggccagtgcgccgactccacgccgtctgacgtccgactcatgaagaagagagtc
cacgtcctccacgcacttctcgccgggtgtgttcagagacaggattattctgtcctgacg
tctttcctgccccccaagcgagagtacgtgctgtcggtcaggatgacgccgctacagtgt
cgaatgtacagacactacctgcagaactacaccgctgaaggacggggtgtgaacagttta
tttcaggattatcagatcctaagtctgatctggacgcatccttggtgcctgcagctctct
gaccttaataaaggaaacaaggctaaaggggaggagccaacttctgaaaccatggtgact
ggtcagaaatccaaagagacaaaacaacagaaccataatgaacgtggaaccaacttagtg
gaaactacaccagaagaggagcgcagtgtgttgagcggacccccagcaggttggtacaag
gagtttgtgtccaacgtcgatgctgaggtcctggggcattctgggaaattaatgctgctg
atggagatcctgcgctgcgctgaacaactgcaggacaaagtgttggtgtttagtcagtct
cttgtttcactggacctgattgaaaccttcctggagttggctgatagggcaaagaaggag
gggaaggcacgtgtttataacgggcagcgctcatgggagcgacataaagactattatcgc
ctggacggctccactactgcaacagcacgcaagaagtgggctcaggagttcaacaacgtc
agaaacacacgctgcaggttgttcctgatctccactcgagccgggtctttagggattaac
ctggtggcggcgaatcgagtcgtggtgttcgatgcatcctggaacccgacctatgacatt
cagagcatgtttagagtctatcgcttcggccagaagaagctcgtgtacgtctaccgcctc
cttgcccagggaacgatggagcagaagatatacgagcgtcaggtggcgaagcagtctctg
tcgtcccgtgtggtggaccagcagcagattcagcggcacttcacacagagccaactgagc
gagctgtaccgctttcaacctgacgtccgcggcaagaaccacaccgtggagcctccggac
aaagtgctggcgacgctcctgcagcagtgtgggcggagcatagtgtcgttccacgaacac
gattcgctgctagatcacagggtggaggaggagcttagcgtggaggagaggaaggaggcg
tgggaggagtacaagctcgaggagacgacgcaaacacactcacgtgcctcgatcgacggc
gagctgtggaagaaaagcaggcaggagttggaggtgatgttaaaaaaaggtcgtttggaa
gtgcagaaagcagcgcaaaacatcaaacaacgaagtctagactactttgagaaggaagtg
atgaaacagcaccctctggtggacacagatgtaataaggcagagggctgctcaggcctac
gagagattcgaacaagagagaaagttcaggatcgagaattaccagcacatgctcaacact
cagcagaagctcattctgtccatacagcagattttagctgaacgtcaaggcaccagagct
cctcctgctccatccacaccgttcgtcagttcgagattaaaagtgggtggatcgtcctca
gcctcgcccagtgctccgcccgccgctccgctgcattag
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integrated database retrieval system
