Clarias gariepinus (North African catfish): 128512328
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Entry
128512328 CDS
T10780
Symbol
prpf4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128512328 (prpf4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cgar03041
]
128512328 (prpf4)
Spliceosome [BR:
cgar03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
128512328 (prpf4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40_Prp19
WD40
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40_CDC20-Fz
Beta-prop_WDR3_2nd
WD40_Gbeta
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
Beta-prop_WDR36-Utp21_2nd
Beta-prop_CAF1B_HIR1
WDR55
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR75_1st
Beta-prop_WDR36-Utp21_1st
PRP4
WD40_MABP1-WDR62_1st
Beta-prop_Aladin
Beta-prop_EML
WDR90_beta-prop_4th
ANAPC4_WD40
Beta-prop_DCAF4
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_EIPR1
Beta-prop_SCAP
Beta-prop_WDR41
Beta-prop_Vps41
Beta-prop_IFT140_1st
WD40_like
WD_LRWD1
Beta-prop_Nup120_160
Beta-prop_WDR11_1st
Beta-prop_WDR35_TULP_N
Tricorn_2nd
Motif
Other DBs
NCBI-GeneID:
128512328
NCBI-ProteinID:
XP_053341532
LinkDB
All DBs
Position
24:4748260..4755844
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AA seq
507 aa
AA seq
DB search
MSDEDEAPLVKKTRIFYGSLEEKEKERLSRDGGISSAKDAIKAGIEAGNINISSGESLEL
EERVSERQAEVLAEFERRKRARQITVSTDDTEVKACLRALGEPITLFGEGPAERRERLRN
ILSVVGPDALKKSKKDEEKAKRSQEDSQQTWYHEGPETLKEARIWLAKYSLPRAVNRLDA
AHAQREIPESTRTVRQQELHKSLRNLNNFCSQIGDDRPISYCQFSPNSKLLVTASWSGLC
KLWNVPDCSLVRTLRGHNTNVGAVSFHPQATLTLDESDVNLASCAADGSVKLWSLDSDEP
VADIEGHFMRVARVSWHPSGRFLGTTCYDNSWRLWDLEAQEEILHQEGHSKGVHDLDFHP
DGSLAGTGGLDSFGRVWDLRTGRCVMFLEGHLKEVYAINFSPNGFHVATGSGDHTCKVWD
LRRRRCIYTIPAHQNLLSSVKFQPTDGHYLLTGAYDNLAKVWTHPGWSPLKTLAGHEGKV
MGLDLSPDGQLIATCSFDRTFKLWVAD
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
atgtcggatgaggacgaagcccctttggtgaaaaaaactcgaatcttctatggaagtctt
gaagagaaagaaaaggagcgtctttcccgtgatggaggaatttcatctgccaaagatgcg
atcaaggctggaattgaagctggaaatattaacatctccagtggtgagtccctggagctg
gaggagcgcgtaagtgagcggcaggctgaggtcctggctgaatttgagcgcaggaaacga
gccagacaaatcacagtgtctaccgatgacaccgaagtcaaagcatgtctccgtgccctt
ggagaaccaatcacactgttcggcgagggccctgctgaaagacgagagaggttgaggaat
attttgtcagtagtgggtccggatgctttaaagaaatcaaaaaaggatgaagagaaagcg
aagcgctcccaagaggactctcagcagacgtggtaccacgagggtcctgagacgctgaag
gaggcacgtatttggttggctaaatattcactgcccagagctgtgaatagactggatgct
gctcatgctcagagagagattcctgaatctacacgcaccgtacgacaacaagagcttcac
aagtcactcaggaacctgaataacttctgtagtcagatcggagacgatcgtccgatctcc
tactgccagttcagcccgaactccaaactgttagtcactgcatcatggagcggtctgtgc
aaactctggaacgttccagactgtagtctcgttcgcacattaagaggtcacaacaccaac
gttggagcagtcagcttccatccacaagccacactcactctagacgagtcagacgtcaat
ctggcctcctgtgctgcagacggatctgttaagctgtggagtctcgacagtgatgagcct
gttgcagacatcgagggtcatttcatgagggtggctcgcgtatcatggcatccttccggt
cgctttctgggcacaacctgctatgataactcatggcgtctgtgggatctggaggcccag
gaggagattcttcaccaggaaggccacagtaaaggcgtacatgacttggatttccatccc
gatggatccttagcaggaactggtggtctggattcattcggccgcgtgtgggacctgagg
accggtcgctgtgtcatgttcctggagggtcatcttaaagaagtttacgccatcaatttc
tccccaaatggttttcacgtggctactgggagcggtgaccacacatgtaaagtgtgggac
ctgcggaggaggaggtgtatctacaccatccctgctcatcagaacctgctgtcctccgtc
aagttccagcctacagacggtcattacttgctaacgggtgcttacgacaacttggctaaa
gtgtggacccaccctggatggtctcctctgaagaccctggcaggacatgaaggcaaagtg
atgggactcgacctgtctccggacggccagctcattgccacctgctcgtttgatcgcacc
tttaaactctgggtggccgactga
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