Clarias gariepinus (North African catfish): 128512442
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Entry
128512442 CDS
T10780
Name
(RefSeq) 3'-5' RNA helicase YTHDC2 isoform X1
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
cgar Clarias gariepinus (North African catfish)
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cgar03041
]
128512442
Enzymes [BR:
cgar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
128512442
Spliceosome [BR:
cgar03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
128512442
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
OB_NTP_bind
HA2_C
Helicase_C
R3H
DEAD
HA2_N
Ank_2
AAA_19
Ank
AAA_22
ATPase
nSTAND3
PhoH
AAA_16
Ank_4
AAA_7
ABC_tran
AAA_29
AAA_30
Motif
Other DBs
NCBI-GeneID:
128512442
NCBI-ProteinID:
XP_053341689
LinkDB
All DBs
Position
24:3348203..3377776
Genome browser
AA seq
1426 aa
AA seq
DB search
MYRSNSGSSRRASMNSSKMSGPRKAKGLKDIRISEEVKIAVNLALERFQYSDEREMEFPS
SLTSTERAFVHRLAQSLGYISKSKGKGLQRFLTLWKKDRPESSQSVMTFSLTQNSKHVIQ
NLLQGFPITSKERTDLLQGSERDLAVSPEAHGNGRDKNRTSGRLSNGIPQVPECRSPSEL
DYFRRTLPVYERQDEIVTTISENQVVLVVGETGSGKTTQIPQFLLDDCNRRGIPCRIFCT
QPRRLATIAVAERVVAERGERLGQTVGYHIRLESKVSPKTLLTFCTSGVLLRTLMAGDSV
LSKVTHIIVDEVHERDGLTDFLLTKLRDILQKMPSLRLILSSAALDVNLFIRYFGHCPII
YIKGRPFDVKPLFLEDILRTTGYTNKEMAKYKADMQKEVKQQTSLTEWCKVQADVSPPAS
QKNRQSAGIQQEADLLDSGGDSVYSQMGEKDVASLEPWLLKEMDACISSIFLQQDADAFM
QLFNLIVSENISVDYMHSETSATPLMVAAGRGFISQMEQLLSMGANVKAKSSNGWTALDW
AKHFNQTEAVDLLESHISSREAGQLDESSLVQAASGELSTQDRELLKAYHHSFDDEKVDL
DLIIHLLFSICQSSDEGAVLIFLPGYDEIVGLRDRILYDDKRFAENQHRYQVFMLHSNMQ
TSDQRKVLRPSPSGVRKIILSTNIAETSITVNDVVFVIDSGKVKEKAFDSLNNVTMLKMV
WISKASALQRKGRAGRCRPGICFHLFSRLRFNNMLEFQVPQLLRMPLQELCLHTKLLAPI
TCTIAEFLAKAPEPPHLITVKNAVQMLKTIDAMDPSEDLTELGYHLADLPVEPHLGKMVL
CAVVLKCLDPILTIACMLSYREPFVLPAQASQKRAAMLCRRSFAANTFSDHMALLRAFQA
WQKAHSDSWERSFCEKNFLSQATMEIIIKMRTHLLGQLRAIGFVRARGCSDIRDVNLNSE
NWAVVKAALVAGMYPNLIHMDKDKQTLRGAKEKKVRFHPTSVLSQPQYKKIPPANGQAAA
VQALPTDWLIYDEMTRAHRIASVRCCTAVTPLTVAVFGGRAKLPSSALLEPSPPSTADNF
QFESSDSESEVGYTDQLAEMKIDEWLNFKLDHDMASMVFQLRQRWHSLFLRRIRCPSKPW
SQLDEATLRAVVSVLSAEEQTAGLQQPTGVGQRPRAITPDEPQHQSDSWRSNSGNRSVRE
HETSTNRSPKVSSSVPQSKGQKDKGAIHSKRSTDDHLPVKSDSASFSSPCASPSSSSSIK
VLARSPLSVKKNGSQSPSQKQKSSVRYFIMKSCTMRNIELSQQRGIWSTTPNNEHKLNRA
FQECSTIFLIFSVQGSGHFQGYARMTSEIGSERCKDWGAAGLGGIFSVEWICKKSLSFHV
THQILNPWNDNKKVQISRDGQELETKAGAQLLQLCDRFPIKQEHED
NT seq
4281 nt
NT seq
+upstream
nt +downstream
nt
atgtatcggtcaaactccggctcctctcggagagcaagtatgaattcatcgaagatgtct
ggtccacgtaaagccaaaggcctgaaggacatcaggatcagtgaagaagttaaaattgcg
gtgaaccttgcgctcgagaggtttcagtacagcgacgagagagaaatggagtttccttct
tcgctgacgagcacagagagagcgttcgtacatcgcctcgcacaatccctggggtacatt
tcaaaaagcaaaggtaaagggttacagcgcttcctcaccttatggaagaaggaccgtcca
gaatcgtcacagtccgttatgactttcagtcttacccaaaattccaagcatgtgattcaa
aacctgctgcaagggttcccgattactagtaaagagcgcactgatctgctccagggctct
gagagagacctcgccgtttcgccggaggctcacggtaacgggcgagacaagaacaggaca
agcgggcgtctgagtaacggcatccctcaggtccctgagtgtagaagtccatctgagctg
gattattttcggagaacactgcctgtctacgagcggcaggatgagattgtgacgaccatc
agtgagaaccaggtggtgcttgtagtgggtgaaacgggttcaggaaaaaccactcagatt
ccccagttcctcctggacgactgcaaccgaaggggaattccctgtcgcatcttctgtacg
cagcccaggaggctggcgaccatcgctgtggcggagagagtagtggcagagagaggagag
cgcctgggccagaccgtcggctaccacatccgcctggagagcaaagtttctccgaagacc
ttactgactttttgcacaagcggcgtgctgctcagaacactgatggctggtgattctgtc
ctctccaaggtcacacacatcatcgtggacgaggtccacgagcgggacggcctgactgat
ttcctcctgaccaagttacgggacatactgcagaagatgccttctttgaggcttattctc
tccagcgccgccctcgatgtaaatctcttcatcagatacttcggccattgcccgattatt
tacatcaagggacgtccctttgatgtcaaaccacttttcctggaggacattctgcggacc
actggttacacaaacaaggagatggccaaatataaggcggacatgcaaaaagaagttaag
cagcagacgtctctaacagagtggtgcaaggtccaagcagacgtatccccgccagcgtct
cagaagaaccggcagtctgccggcatccagcaggaagctgaccttctagacagcggaggg
gacagtgtctatagccagatgggtgagaaagacgtggcctcgctggagccgtggctgctg
aaggaaatggatgcgtgcatctcgagcatctttttgcagcaggacgccgatgcgtttatg
cagctttttaacctaattgtcagcgagaacatcagcgtggactacatgcacagcgaaacg
agcgccacgcccctgatggtggccgcaggaagaggcttcatcagccagatggagcagctc
ctcagcatgggggccaatgtgaaggctaaatcttctaatggctggactgctcttgactgg
gccaaacactttaaccagaccgaagctgtagatctgctggagtctcacatctcgtcgcgc
gaggcggggcagctggacgagtcgtccctggtgcaggcagccagcggggagctcagcact
caggaccgggagctgctcaaggcttaccaccacagttttgacgatgagaaggtggacctg
gacctcatcattcacctcctcttcagcatctgtcagagctctgatgaaggtgccgtcttg
atatttttgccaggatatgatgagatagtcggactgcgagatcgcattctttatgatgat
aaaagatttgcagagaatcagcacaggtaccaggtgttcatgcttcactccaacatgcag
acctcggatcagaggaaagttctgaggccgagtccaagcggggtccgcaaaattattctt
tcaaccaacattgctgaaaccagcatcaccgtcaacgatgtcgtgtttgtaattgactct
gggaaagttaaagagaaagctttcgactccctgaataatgtgaccatgcttaagatggtg
tggatatcaaaagcaagcgcattgcagcggaaaggaagagctggacgttgcaggccggga
atctgtttccatctgttcagccggctgcgcttcaataacatgctggagtttcaggttcct
cagctgttgcgtatgcctctgcaggaactttgtcttcacactaaacttttggcccccatt
acctgcaccattgctgagtttcttgccaaagccccagagccaccacacctgatcactgtc
aaaaacgctgtacaaatgctcaagaccatagacgccatggacccgtcagaagacctgacc
gagctgggctaccacctagctgacctgcctgtggagccacacctggggaagatggtatta
tgtgcagtggtgcttaaatgcctggacccgatccttaccatagcgtgcatgctgtcctac
agagaaccgtttgtgttaccagctcaggcttcacaaaaacgagccgccatgctgtgcagg
agaagctttgctgccaacaccttcagtgaccacatggcattgctccgggcctttcaggca
tggcaaaaggcccacagtgacagctgggagaggtctttctgtgagaagaacttcctgtca
caggcaactatggaaatcatcatcaagatgcgcacccacctgttaggccagctccgtgcc
ataggttttgttcgagcccgtggttgcagcgatatccgggatgttaatctgaactccgag
aactgggctgtggtgaaggcggctctcgtggcaggcatgtaccctaacctgatccacatg
gacaaagacaaacaaacactccgaggcgccaaagagaagaaggttcgcttccaccctacc
tccgtcctgagccaaccccaatacaagaagatccctccggcgaacggccaagccgcagca
gttcaggccctgcctacagactggctgatctatgacgagatgactcgcgcacacaggata
gccagcgtgcgctgttgcactgccgtcactccgctcaccgtggctgtgtttggagggcgg
gctaaactgcccagctctgcgcttctggaaccttctccaccttctacagccgataatttc
cagttcgagagcagtgacagtgaaagtgaggttggctatacagatcagctggctgagatg
aagatcgacgagtggcttaacttcaaattggatcacgatatggcgtcaatggtgttccag
ctgagacagcgctggcacagcctgttcctgaggagaatccggtgcccctctaagccgtgg
tcccagctggatgaggcaacgctccgcgccgtagtgtcggtgctgagcgccgaagagcaa
acagctggcctgcaacagcccacgggtgtcggccagagacccagagccattactccagat
gagccacaacatcagtcagacagctggaggagtaatagcgggaacaggagtgtcagggag
catgagacgtctacaaacaggtctccaaaagtctcatcatctgtccctcagtctaagggc
caaaaagataaaggtgccatccattccaaacgttcaactgatgaccatctcccggtaaag
tcagacagcgccagcttctccagtccctgtgctagtccctcttcctcttcctcaataaaa
gtactagctaggtcacctttatctgtgaagaagaatggttcccaatcaccatcacaaaag
caaaaatcttcagtgcgttacttcatcatgaagagctgtaccatgaggaacatcgaactc
tctcagcagcggggaatctggtccactacgcccaacaacgagcacaaactcaaccgagcc
ttccaggagtgcagcaccatcttccttatcttctccgttcaaggctccggacacttccag
ggttatgctcggatgacttcggagattggctcagagcgctgtaaagactggggtgctgcc
ggtctagggggaatcttcagtgtagaatggatctgtaaaaagagtctctcttttcatgtc
actcatcagatcctaaacccctggaacgacaacaagaaagtgcagatcagccgggatggc
caggagctggagactaaggctggagcacaactgttgcaactctgcgatcgcttcccaatc
aaacaggagcatgaggattga
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integrated database retrieval system
