Clarias gariepinus (North African catfish): 128512458
Help
Entry
128512458 CDS
T10780
Name
(RefSeq) transient receptor potential cation channel subfamily V member 1-like
KO
K05222
transient receptor potential cation channel subfamily V member 1
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar04080
Neuroactive ligand-receptor interaction
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
128512458
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cgar04040
]
128512458
Ion channels [BR:
cgar04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
128512458
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ank_2
Ank
Ion_trans
Ank_3
Ank_4
Ank_5
DNA_circ_N
Motif
Other DBs
NCBI-GeneID:
128512458
NCBI-ProteinID:
XP_053341718
LinkDB
All DBs
Position
24:7247150..7266364
Genome browser
AA seq
743 aa
AA seq
DB search
MEKFSLEIDDRTAEEKKEDKKRQRQAAKNDKPLMDTHLHEDVGEVRPQIRIRAGFSDEIQ
GKKHEPNQQERFDFERIADAVSSGDVSRLEGLEEYLRKYNKTLTSMDYCHKGKTVLMKAL
LNLKNGEIVERLLSIAERNNNLLELVNTARTDDCYKGQTALHIAIERRNKALVNLLIQKG
ANVHAQACGTFFQPVGENCFYFGELPLSLAACTNQKDIVDLLMEKADVKRTDTLGNTVLH
ALVMVADNSAENTKFVISMYDYILTKDAVKNSSPKKLEDIENSQGLTPIKLAAKLGKIRL
LEHILNREFQEEECRHLSRRFTEWGYGPVSGALYDLNSIDTCDPKSVLEIIIYGPEIPNR
LEMLQIELLSKLLEDKWDRFAKWIFLFKFIAYTIYLTFFTAVSYHRQDGTPPFPIRKGGL
GSLLLLGQIVMVTGSFYFICIAVVDLYKKRPGLQTLLIDGYCDLLFLLQAVLFIVCAVLY
FAGKKEYLTFLVFSVALCWVNLLYFSRGSRHMGIYNIMIQRIFLSDIFRFLYVYLVFLIG
FSAAVVILLKDPDNGSSSNTGNQNETKTYKSITLTTLELFKFTIGMGDLEFTEDYEYKDV
FYVLLILYLVLTYILLFNMLIALMSKTVDDMSDESASIWKLQRAITILDIERFAWFMKAR
LRSGVKKDLGKKKDEDCRWCFRVQDVDWENWNRNLCIISEDPGNYQTVLQTEPDTEPDAS
RHRFIRHTSKEGPETEPLASSQV
NT seq
2232 nt
NT seq
+upstream
nt +downstream
nt
atggaaaagttttctttggagatagatgacaggacggctgaggagaagaaagaggacaaa
aagagacaacgtcaagcagctaaaaatgacaaaccactaatggacactcacctccatgag
gatgttggtgaggtccgtccccaaatcagaataagggctggattctctgacgaaatacaa
ggaaaaaaacatgaacccaatcagcaagaacggttcgactttgagaggattgctgatgct
gtgtccagtggtgacgtctcacgactggagggcctggaggagtatctgcgaaaatataac
aagacactgacaagcatggattattgtcacaaaggaaagacagtcctgatgaaggccctg
ctaaacctgaaaaatggagaaatagtggagcgcttgctgagcattgcagagagaaataat
aatcttcttgagttagtgaacacagcacgcacagatgactgctataaaggacagacagct
cttcacatagccatcgagaggagaaacaaggccttggttaacctgcttattcagaaaggg
gctaacgtccatgcacaggcctgtggtacattcttccaaccagtaggcgaaaattgtttc
tactttggtgagttaccgctttctctggctgcgtgcactaatcagaaagacatagtggat
ctgctgatggaaaaagcagatgtgaagcgtacagacactctgggcaacacggttctccat
gctcttgtcatggttgcagacaatagtgctgaaaatacaaaatttgtcatttccatgtac
gactacattctaaccaaagatgctgttaagaattccagtccaaagaaactggaggacatt
gagaacagtcagggacttactcccatcaagctggctgcgaaactaggaaagattaggctg
cttgaacacattctgaatcgtgagttccaggaggaagagtgcaggcacctgtcccgaagg
ttcacagagtggggatatggcccagtgtctggtgcattgtacgacctgaactctattgac
acctgtgacccaaaatctgttctagagataatcatttatggcccagagattcctaatcgt
cttgagatgctccaaattgagctgcttagcaaactcctggaagacaaatgggacagattt
gccaaatggatattcctctttaagtttattgcttataccatatatcttaccttcttcaca
gctgtttcatatcaccgtcaagacggtacacccccgtttccgatcaggaagggtggcctt
ggttccctgttgcttttaggtcaaatcgttatggtaactggatcattctacttcatatgt
attgcggtggtggatttatataaaaagcggccaggtctgcaaacgctgttgatagatgga
tactgtgacctcctttttctattacaggctgtgttgtttatagtctgtgcggtgctgtat
ttcgctgggaagaaggaatatcttacctttctggtgtttagtgtggctctgtgctgggtt
aatctgctctacttctccagagggagtcgacacatggggatctacaacatcatgattcag
aggattttcctttctgacatcttccgcttcctctacgtctacttggttttcctcattgga
ttttcagcagctgtggtgattctactcaaggatcctgacaatggaagttcctcaaacacg
ggcaatcaaaatgagacaaaaacctataaaagcatcactctcaccactctggagctgttt
aaattcactataggcatgggcgacttggagtttacagaagattatgagtacaaagatgta
ttttatgtgctgctcatattgtaccttgtgctcacgtacattttgctgttcaacatgtta
attgctctgatgagcaagactgtggatgacatgtctgatgagagcgccagcatttggaag
ctacagcgtgccatcaccatcttggatatagagagatttgcttggtttatgaaggcaagg
ttgcgctcaggagttaaaaaggacctgggcaaaaaaaaagatgaggactgccgctggtgt
ttcagggtgcaagatgtggactgggaaaattggaaccgcaacctttgcatcatcagtgag
gatcctggaaattaccaaacagtcctgcaaactgaacctgacacagagcctgatgccagt
cgacatagattcatacggcatacatccaaggaagggccggagacagaacccctggcctcc
agccaagtgtaa
DBGET
integrated database retrieval system
