Clarias gariepinus (North African catfish): 128512557
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Entry
128512557 CDS
T10780
Symbol
tdrd12
Name
(RefSeq) putative ATP-dependent RNA helicase TDRD12
KO
K18409
ATP-dependent RNA helicase TDRD12 [EC:
5.6.2.5
]
Organism
cgar Clarias gariepinus (North African catfish)
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cgar03036
]
128512557 (tdrd12)
Enzymes [BR:
cgar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
128512557 (tdrd12)
Chromosome and associated proteins [BR:
cgar03036
]
Eukaryotic type
Gene silencing
piRNA pathway
128512557 (tdrd12)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TUDOR
DEAD
CS
Helicase_C
Cupin_7
Motif
Other DBs
NCBI-GeneID:
128512557
NCBI-ProteinID:
XP_053341877
LinkDB
All DBs
Position
2:27052353..27080772
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AA seq
1387 aa
AA seq
DB search
MDVGAVLELAVIKVENPGCIWGRPVKRPGVQVESPPDYENLQVKMNLFYHSVTLDVQKVK
LSSLEKGQVCVVFWPVIKSWCRARVESLFLGSASSQATCILVDHGEHIVVSTDDVRAPLD
KFLQLPFRVRRFGLARIHPLKLKVPLCNKTAELVPSPHWDSSATKYLHNLLQASELVEAV
ICGTHDDCTAIELYLTIRSVKICVNDDLVVKRFACFTSEKAVGDQGKGVHHAPVCLTWDI
FSNPQHILKMNGGWKVMSAPSHLLTRKSKRETVCVDPPVTAVKSDIPTETISASNGQGVC
GGHDTNEVPKSPEEGYIKTGDFEESCTENMLAKQLSEKLNLYRCLKFLNPCSDSNLSTKH
DVHEDNQKDLRTSDETAEVQKDLSSTSVIPTVQKESAFTQEKSIKDQFACARLLQLLNPD
PIGPDSESLGDNVACCDSSKTGVLVHSVIPINPCSTLMQAPITEHFHKFLLRRKYKGPSL
SGSYCWPSVALGFDTVLICHSGEDLLSYIPPLLSQLQLASLVNASPAHNGPIAVIVCPGR
EKVASVLELLKESKAALHLHPAAVLVGVGKDEAKQTNIQNNCRLLVTTSFSLVRLLEVQL
FFFQRLCHLILDEAHELFSRAPEQMIIILQHYQKVVSRPERMCVQQLVAVGSRWCRELET
VVQNYMFNPCIIITVPEEAALYGGVQQTILMCLDCNKTSVLLGSLDFSPSVPQKTLLITN
SAEEVEHVYKALSNTAAFSLKVHEGLTYQFDFVIGQWRKDIGPGTQIILVTTNECLKALG
IRDATCVVHYGFPSSPKLFGSRMFCMVENFKNLSYKNHSEGLSPAARSVLLLSEQNVRHV
FGVLRYLKRTDTPLPPELLQTAQKVQQAKEQRKADRALCSYMKSLGFCRDSTGCPDRHVV
NKILDSPQHLDSGTILVLPLYIKTASVYYGRIVDQKENCFEKLAAEMKSHYAKGRPLTTE
VVEGGFYAVQEGDIHHRVCVTMVPDKGDRLFNSVTVRFVDEGRVQEMKSHQLLQLPLEFQ
NLPGQAVEIILCRAQPIDGEIDWNPKVTRAISQKIKGKIHHAKVVMCLGNTIWVDPMVRM
TRMPGLKILINEYNVHAEIAATGMGTTNPQHLELLKSLCQKEKTSAVVEFSESNGCESEV
VSLEQRIHAVGEVLARKVKAGMQIAESTDTELCEPLQNFQNTNQVTESNRGQSQISVEGR
NDAEHLVRSADLTCLPQDWTPALSNGSVKADHEFNNEVLHTGCRQDIAAPKSFHPQIKWY
QEENSVTLKIKLTNPMMQTCEFFSDRVLYSAYLNRQRYCANLELHSDISTEQCSWKMTCS
EPVIKLVKKKKGEWKSLLKYKSAFVSYDFDHIEVEEISLLNGTWFVGDTGEEGYYKSSEE
QSLSDSD
NT seq
4164 nt
NT seq
+upstream
nt +downstream
nt
atggacgttggagccgtgctagagctggcagtaattaaggttgagaatccaggatgtatt
tgggggcgacctgtaaaaagacctggtgtacaggttgaaagtcctccagactatgagaac
ctgcaggttaaaatgaatctcttttatcatagtgtcaccctggatgtccagaaagtaaag
ctatcatcactggagaagggacaggtgtgtgttgtgttttggccagtgataaagagctgg
tgtcgggccagagtggagtctctgttcctggggtcagcaagcagtcaggccacctgcatc
ttagttgaccacggagagcatattgttgtcagcacagatgatgtaagggctcctcttgac
aagttcctgcaactgccctttcgtgtgcgaaggttcggactggcccggattcacccgcta
aaactcaaagttcccctctgcaataaaacggcagagctagttccatcccctcactgggat
agctctgctacaaaatacctccacaatctcctacaagcatctgaattggttgaggctgtt
atttgtggaacccatgatgattgcacagctattgagctttacctgactatcagaagcgtg
aagatctgtgtaaatgatgatttggtggtgaaaaggtttgcgtgtttcacaagtgagaag
gctgtgggagatcagggtaaaggtgtccatcacgcccctgtctgcttgacctgggatatt
ttcagcaatcctcaacatattctcaaaatgaatggtggctggaaagtgatgtctgctcct
tcacatctcctaaccaggaagagtaagagagaaacggtgtgtgtggatcctccagtgact
gcagtgaagtcagatattcccactgaaaccatatctgcctccaatggacagggggtatgt
ggaggacatgacacaaatgaggtgcccaagagccctgaggaaggttacataaagactgga
gactttgaagagtcatgtacagagaatatgcttgcaaagcagttgtctgaaaagctaaac
ttgtatagatgtctcaagtttttgaacccctgctcagattcaaacttaagtaccaaacat
gatgtccatgaagataatcaaaaggatttaagaacttctgatgaaacagcagaggtacag
aaggacctcagtagtacaagtgtcatccccacggtgcaaaaggagtcagctttcactcaa
gaaaaaagtatcaaggaccaatttgcctgtgccagattgctacagttgctgaacccagat
ccaataggtccagactcagaatctcttggtgataatgttgcatgctgtgattccagcaaa
actggagttttggtccactcagttatccctataaacccctgtagcaccctgatgcaggct
cccatcaccgaacatttccataaattcctgttaaggaggaagtataaaggaccgagtctg
tctgggagttactgctggccctccgtggcactaggttttgacacagtgctgatatgtcac
agtggagaagatcttctctcctacatcccacctctgctttctcagctgcagttagcctct
ttggtcaatgcctcccctgcacacaatgggccaatagcagtgattgtttgtcctggaagg
gagaaggtagcgtcagtgctggagctactaaaggagagcaaggctgcactacacctacat
cctgctgctgtgctggttggagtaggcaaggatgaggccaaacaaaccaacattcagaac
aactgtcggttgctggttaccacctcgttcagcctggtcagattgctggaggtgcagtta
ttcttctttcaaaggctctgccacctgattctggatgaggctcatgagctcttctcaaga
gctcctgaacagatgatcatcatcttacaacattaccagaaagtggtgtccaggccagag
agaatgtgtgtgcagcagcttgttgctgtaggcagtcgttggtgtcgggagctggagact
gtggtccaaaattacatgtttaacccctgcatcattatcacagtgccagaggaggcagct
ttatatggtggggttcagcagacaatactgatgtgtctggactgcaataagacctcagtg
ctactcggttctttggacttcagcccctctgtcccacagaaaacccttctcatcactaac
tcagcagaggaggtggagcatgtatacaaggctctcagcaacacagcagcattctctcta
aaagttcacgagggccttacctatcagtttgattttgtgattgggcagtggaggaaagac
attggtccaggcactcagattattttagttaccaccaatgagtgcttaaaggctcttggt
atcagggatgccacgtgcgttgtgcattatggtttccccagctctcctaaattgtttggt
agccggatgttctgcatggttgagaactttaagaatctctcctataagaatcattccgag
ggcttgtctcctgcagcacgttctgtgttgctgctgtcagagcagaatgttcgtcatgta
ttcggtgtcctgcgctacctgaagcgtacagacactccactgccaccagagctcctgcag
actgcccagaaagttcagcaggccaaggaacagcgtaaagctgaccgtgctctttgcagc
tatatgaagagcctgggcttctgcagggacagcacaggctgcccagacagacacgtagtc
aacaaaattcttgattctccccaacacctggactctgggactattttggtgctgcccctt
tacatcaagactgcgagtgtgtattatgggcgtattgtggaccagaaggagaactgtttt
gagaaacttgctgctgagatgaagtcacactacgctaaagggaggcctcttacaacagag
gtggtagagggaggcttttatgcggtgcaggaaggggatatacatcatagggtgtgtgtg
accatggtgccagacaagggagacaggctgttcaacagcgtcaccgttcgatttgtggat
gaaggacgtgtacaggaaatgaaatcgcatcagttactgcagcttcctctggagtttcag
aacttaccgggtcaggctgtggaaatcattctgtgtagggcccaacccattgatggagag
atcgactggaacccaaaggttactagagctatcagtcagaaaatcaaaggaaaaatacat
catgccaaggtggtgatgtgtttgggaaatactatatgggttgatcctatggtacgcatg
acacgcatgcctggtctgaagatcttaataaacgaatataatgtccatgcagagattgca
gccactgggatgggcactacaaaccctcagcatctggagctactaaagtcgctgtgccag
aaagagaagacatctgctgtggtggagttcagtgagagtaatggatgtgagagtgaggtg
gtgtctctggaacagaggattcatgcagttggggaagttcttgccagaaaggtgaaggct
ggaatgcaaattgctgagtctacagatactgaactttgtgaacccttacagaactttcaa
aacacaaaccaggtcactgaatctaacagaggacaaagtcagatctctgtggaaggcaga
aatgatgctgaacacctggtgaggtctgctgatctaacatgtttacctcaagactggact
cctgctctttctaatggctcagttaaagctgaccatgaatttaacaatgaagtcttacac
actggctgtagacaggatattgctgcaccaaaaagtttccatccacaaatcaagtggtat
caagaagaaaactcagtcactcttaagataaagcttaccaaccccatgatgcagacgtgt
gagtttttctctgatagagtcctttacagtgcatatttaaacagacagcggtattgtgcc
aatctggagctgcacagtgacatcagcacagagcagtgctcatggaaaatgacatgcagc
gaaccagtaatcaaactggtgaagaaaaagaaaggcgagtggaaatcactgcttaaatac
aagagtgcttttgtaagctatgattttgaccacattgaagttgaagaaatttctctctta
aatggtacttggtttgtgggtgacacaggagaagagggctactacaagagctcagaagaa
cagagtctgagtgatagtgactaa
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