Clarias gariepinus (North African catfish): 128512867
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Entry
128512867 CDS
T10780
Symbol
wdr33
Name
(RefSeq) pre-mRNA 3' end processing protein WDR33 isoform X1
KO
K15542
polyadenylation factor subunit 2
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
128512867 (wdr33)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgar03019
]
128512867 (wdr33)
Messenger RNA biogenesis [BR:
cgar03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
128512867 (wdr33)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_THOC3
WD40
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
Beta-prop_EML
Beta-prop_CAF1B_HIR1
WDR55
WD40_Gbeta
Beta-prop_IFT140_1st
EIF3I
Beta-prop_Aladin
Beta-prop_WDR36-Utp21_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR19_1st
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_RIG_2nd
Beta-prop_EIPR1
WDR90_beta-prop_4th
Beta-prop_WDR75_1st
Beta-prop_IFT122_1st
eIF2A
Beta-prop_Vps41
WD40_RFWD3
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
Beta-prop_WDR35_TULP_N
Beta-prop_HPS5
Beta-prop_WDR11_2nd
Beta-prop_DCAF4
Beta-prop_WDR41
Ge1_WD40
PEP5_VPS11_N
Motif
Other DBs
NCBI-GeneID:
128512867
NCBI-ProteinID:
XP_053342317
LinkDB
All DBs
Position
25:complement(23078775..23105103)
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AA seq
1100 aa
AA seq
DB search
MATDIGSPPRFFHMPRFQHQAPRQLFYKRPDFAQQQAMQQLTFDGKRMRKAVNRKTIDYN
PSVIRYLENRLWQRDHRDLRAVQPDAGCFNDLVPPVGMLNNPMNAVTTKFVRTSTNKVKC
PVFVVRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDSPVRAMTWSHNDMWMLTAD
HGGYVKYWQSNMNNVKMFQAHKEAIREASFSPTDNKFATCSDDGTVRIWDFLRCHEERIL
RGHGADVKCVDWHPTKGLVVSGSKDSQQPIKFWDPKTGQSLATLHAHKNTVMEVKWNLNG
NWLLTASRDHLCKLFDIRNLKEELQVFRGHKKEATAVAWHPIHEGLFASGGSDGSLLFWN
AGVEKEVGGMEMAHEGMIWSLAWHPLGHILCSGSNDHTSKFWTRNRPGDKMRDRYNLNLL
PGMSEDGVEYDDNEPNNLATIPGMGIPEQLKAAMEQEQTNKETVPETEMSIPGLDWGMDE
VMQKDLKKPPTKKVPYAKPIPAQFQQAWAENKVPTMVPGEPPKERKDEKVDGKKKTQAEI
EQEMAALQYTNPMLLEQLKIERMAQLQDQTMPPPGGQPGPMQSFPGQGAPIAPPPQGFPQ
SGPPQQMPPNMGPPPPMGQGNMPGPGPGPFIPPNTMGPPGPLPHQGPPPQGMMGPPDLHG
PPRYPGPHRNMGPHGMPQGPRGMQGPPPGPMNSGPPTGGMMGPPPRGQGPPQGGMMHQEM
RGPAPHGNMMGAPPPGGMMGPPPRNHNMGNMHGMGPPPGGMHGPPNNMQGPPGNMQGPPP
YMQQGKPPHMGEGNRGQFNQGQNSGPQSMMHGPGAKDGPRGPPNHHMGPPPDHQGSDGGS
QYWPEDGGYQEGWRRPGQDFHGDHRGHRGGSGGQWENQERFPSHDDDYERFDDGYEGDGY
EQRPRRPPHSDDSFRRGGMSGRGGRGGYQDEYGGDENFDSQDEMGQGWGNGGRGRPRGGP
PRGGGVGRKGLLPTPEEFTSHYEGGRNQEGWEGGQDSGHDGYRDGQRGDHSMHDSPSTVN
RERSSSLQGMDMASLPPRKRPWHDGPGTGDMDSPGAGPDERGAGRPPPRDDVGYGPPPPS
RGGRGGWVRGGRGLRGGRGR
NT seq
3303 nt
NT seq
+upstream
nt +downstream
nt
atggcgacggacatcggctctccgccgcgcttcttccacatgcctcggttccagcaccag
gcgccccggcaactcttctacaagaggccggactttgcgcagcagcaagccatgcagcag
ctcaccttcgacggcaaacgcatgaggaaagctgtgaaccgcaagaccatcgactacaac
ccgtccgtcatcagatacctcgagaaccgtctgtggcagcgggatcatcgagatctgcgt
gccgtccaacctgatgccggttgcttcaacgaccttgttcctcccgtcgggatgcttaat
aaccccatgaacgccgtcaccacaaagtttgtcagaacgtccacaaataaagtgaaatgc
ccggtgtttgtagtgaggtggacccctgaaggcaggcgactcgtaactggtgcctcaagc
ggcgagttcactttgtggaacggcctaacctttaactttgagactattttacaggctcac
gacagcccggtgcgagcgatgacgtggtctcacaacgacatgtggatgctgactgccgac
cacggcggctacgtgaagtactggcagtccaacatgaacaacgtcaagatgttccaggcg
cacaaggaggcgattagagaggccagtttctctcctacggataataaatttgccacttgc
tcagatgatggaactgtgcgcatctgggactttctgcgctgccacgaggagagaatactc
agaggtcacggagcagatgtcaagtgtgtcgactggcatcccactaaaggcctggtggtc
tcgggcagcaaagacagccagcagcccatcaagttctgggatccaaaaactggccagagt
ctggcaacattacacgcccataaaaacacagtgatggaagtgaagtggaacctgaacgga
aactggctgctgacggcgtcgcgcgaccatttatgcaaactcttcgacatccgcaacctg
aaagaagagctgcaggtgttcaggggccacaaaaaggaggcgacagctgtcgcctggcac
ccaatccatgagggtctttttgctagtggaggctctgatggatctctgctgttctggaac
gcaggggtggagaaggaggtcggcggaatggagatggcccatgagggtatgatctggagc
ttggcctggcatcctcttggccacattttgtgctcggggtctaacgaccacaccagcaaa
ttctggacccggaatcgacccggagacaagatgcgcgaccggtacaacctgaatctccta
ccaggaatgtcggaggacggagtcgagtacgatgacaatgagcccaacaacctggccacc
attcctggcatggggatcccagagcagctcaaagcagccatggagcaggaacaaaccaat
aaagagactgtaccggagactgaaatgagcatcccggggctggactggggcatggatgag
gtgatgcaaaaggacctgaagaaacctccaacaaagaaggttccctacgcaaaacccatt
cctgctcagttccagcaagcctgggcggagaacaaggtgccaaccatggtcccaggagag
ccacctaaggagaggaaggatgagaaggtggatggaaagaagaagacccaggctgagatc
gagcaggagatggctgcgctgcagtacacgaaccccatgctgttagagcaactgaagatt
gagcgaatggcccagctccaggatcagaccatgccacctcctggaggccaaccaggcccc
atgcaatccttccctgggcaaggcgcccccattgcaccgcctcctcagggcttccctcag
tcagggccaccccagcagatgcctcccaacatggggccgcctcctccaatgggtcaaggc
aacatgcccggccccggcccgggcccctttatccccccaaatacgatgggccccccaggt
cctcttcctcaccagggtcctcctcctcagggcatgatggggcctccggatcttcacgga
cctccccgctaccccgggccccacagaaacatggggccacatggcatgccacaagggccc
aggggcatgcagggtcctccaccaggcccgatgaattcaggcccgccaacaggaggcatg
atgggacctccacctcgaggtcaggggccaccccaggggggaatgatgcatcaggaaatg
cgaggtccagcacctcatgggaatatgatgggggcacctcctccaggaggaatgatgggg
cctccaccaaggaatcacaacatggggaacatgcatggaatggggcctcctcctggagga
atgcacgggcccccgaacaatatgcaagggccaccaggtaacatgcaaggacctcctccg
tatatgcagcagggcaagccgccacacatgggtgaaggaaacagaggacagttcaaccag
ggacagaattcgggcccgcagtcgatgatgcacggccctggtgccaaagacggacccaga
gggcctccgaaccaccacatggggcctccacctgatcaccagggctcggacggaggttct
cagtactggcctgaggacggggggtaccaagagggctggaggagaccgggacaggacttt
cacggagatcacaggggccaccgaggaggttctggagggcagtgggaaaaccaggaaagg
tttccttctcacgacgatgactatgaaaggtttgacgacgggtatgaaggtgatggatac
gagcagaggccgaggcgaccaccacattcagacgattcttttaggcgaggcggaatgagc
ggacgcggaggccgaggtggttatcaggacgagtacggaggagacgagaacttcgactct
caggacgagatgggacagggctgggggaacgggggaagagggaggccgcgcggaggacca
ccgcgtggaggtggtgtaggaagaaaggggcttctgccaactcctgaggagtttacatct
cactacgaaggaggaagaaaccaggagggttgggagggagggcaagactcaggtcacgac
ggctaccgggacggtcagagaggcgaccacagcatgcacgacagcccgtctacggtcaat
agggagcgctcttcctccctacagggcatggacatggcctcgcttccaccacgcaagcgt
ccctggcacgacggcccgggcacaggagacatggattcgcccggagccggacccgatgaa
cgaggggcaggtcgacctcctccacgtgacgacgtcgggtacggtcctcctcctccatcc
aggggcggtagaggagggtgggttcgaggtggtcgtggactcagagggggccggggccgg
tag
DBGET
integrated database retrieval system
