Clarias gariepinus (North African catfish): 128512967
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Entry
128512967 CDS
T10780
Symbol
vcpip1
Name
(RefSeq) deubiquitinating protein VCPIP1
KO
K11861
deubiquitinating protein VCIP135 [EC:
3.4.19.12
]
Organism
cgar Clarias gariepinus (North African catfish)
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
cgar01002
]
128512967 (vcpip1)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cgar04121
]
128512967 (vcpip1)
Enzymes [BR:
cgar01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
128512967 (vcpip1)
Peptidases and inhibitors [BR:
cgar01002
]
Cysteine peptidases
Family C64
128512967 (vcpip1)
Ubiquitin system [BR:
cgar04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
OTU
128512967 (vcpip1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VCIP135_N
OTU
OTU1_UBXL
ubiquitin
Motif
Other DBs
NCBI-GeneID:
128512967
NCBI-ProteinID:
XP_053342499
LinkDB
All DBs
Position
25:10791607..10801578
Genome browser
AA seq
1106 aa
AA seq
DB search
MSSAQGTKKRDKRILSGICPDFKCQARLFFPAYSSVSIECTECGQRHEQKNLLNVEEVTD
PDVVLHNLLRNALLDVTGAPKKSTELVKVMGLSNYHCKLLSPILTRYGMDKQTGKAKLLR
EINQGELFDCSLLGARAFLIEQEHVSTVGYGKDRSGSLIYLHDTLEEIKKANNNKECLIP
IHVDGDGHCLVHAVSRALVGRELFWHALRENLKLSFKQNLDRYKALFQDFIDTAEWEDII
NECDPLFVPPEGVPLGLRNIHIFGLANVLHRPIILLDSLSGMRSSGDYSATFLPGLVPEE
QCRGKDGFLNKPICIAWSSSGRNHYLPLVGIKGMSLPKLPAALIPKAWGVPQELINRYVS
LEPCGGCVIGGDRSLQEKYLLRLVGAMEDVFIEKHAIHPALVADVHQYVYRRTGVIGIQP
EEVTEAAKKLVQENRLHRCLMCNALSELHVPPDWLVPGGKLYNLAKSTHGTLRGDKNYTF
PLNNLVCSYCPERDALVPDYKLSSLSTCTWCHRNSARHVRGDGSIVYLDGDRTNTRSQGG
KCGCGFKHYWEGKEYDNLPEAFPITLEWNGRVVHETVYWFQYEVDPALNSNVYNVAMRLV
TKHFPGEFGSEILVQKVVNTVLHHTAKKNPEEYHPVAVEGAHMQGQEQGGGQVVEWDANP
PQKIILTGQKGRTLHKEELVMSQAERNLQHKISEQAAVSQRRRSQRQRLQDQSAEPRSAS
PAPFSSAPPTPTKGLAPSGQKKIRVTTSDGRQATLQLQAHNTYAELQEAITQAFNLQPHQ
QCIRHGFPPRELPPPPPEHQDLPVALQHGDRITVEVLKESVPDPETNIHTPMEPWLGRTS
SREIQDSVDLEMSSLCLLATLMGEDVWSYAKKLPHLFQQGGVFYNIVKKDMGLLDGKHCT
LPHLTGKTFVFNAAEDRLELCVDAAGHFPVGPNVEEVIQEALSQLCSEPPSRNREGSPSH
GLKLGSGGVVRKKEQTVTAFQGKGHSLGSTSHEHPPIRREHSNGVDLSGSVEGDGLARSR
EELVRVAPGMLTLREGCREVELEPTAIEAQRRRLQEMVSNIQASMDKHLRQQTPPNTITN
QDEKEENLEEQDKIKSQGAEPMDQSL
NT seq
3321 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcagcacaaggtacaaagaaaagggacaagcgcattttatcaggtatttgtcca
gatttcaaatgtcaggcgagactgttcttccctgcttacagctcagttagcattgaatgc
acggagtgtggacagcgccacgaacagaagaatctgttaaatgtggaggaagtaaccgac
ccagatgttgttcttcataatttactgagaaacgccttgctcgatgttacgggagcgccg
aagaaaagcacagagctggtcaaagtcatgggtctgtccaactaccactgcaaactgctg
tcccccatccttacccgttacggaatggacaaacagacgggaaaagccaaactgctgcgg
gagataaatcaaggtgagctctttgactgctcgctgctcggtgccagagcctttcttatt
gaacaggagcacgtatctacagtcggctatggtaaggacagatctggcagcctcatatac
ctccacgacacattggaggagatcaagaaagccaacaacaacaaagaatgtctcattcct
atacatgtggacggagatggtcattgcctggtccatgctgtgtccagggctttagtgggt
cgtgagcttttttggcatgcgctaagagagaacctcaaactcagtttcaaacaaaatctc
gatcgctataaggctctctttcaagattttattgacactgcagaatgggaggacatcatc
aatgagtgtgaccctttgttcgtgcctccagaaggtgtcccacttggactgaggaacatt
catattttcggcctagccaatgtcctgcaccgtcccataatcctgctggactctctgagt
ggcatgaggagctcaggtgactactcggccacatttctgccaggcctggtgcctgaggag
caatgcagaggaaaggatggcttccttaataagcctatctgcatcgcctggagcagctca
ggcaggaatcattatcttcctttagtgggtattaagggaatgtcacttcccaagctgcct
gccgctctgatccccaaagcttggggagttccacaggagcttatcaatagatatgtcagt
ctggaaccctgtggaggctgtgttattggaggagatcgaagcctgcaggagaaataccta
cttcgtttagtcggtgccatggaggatgtttttatagaaaaacatgccatccaccctgca
ctggtagctgatgttcatcagtatgtttaccgccgaacaggggtgattggcatccaacct
gaagaggtgacagaggcagcaaaaaaattggttcaggagaatcgtctgcatcgctgtctg
atgtgcaatgcactgtctgaacttcatgttcccccagattggttagtacctggtggaaaa
ctctacaaccttgctaagtctactcatggcactctccgaggagacaaaaactacacattt
ccattaaataacttggtatgttcttactgccctgagagggatgcactggttcctgactac
aaactcagttccttgtccacctgcacctggtgccacagaaactctgcacgacatgtccgt
ggtgatgggtctatagtgtacctagatggagaccgtacaaacacacgatcacagggtggt
aagtgtggttgtggttttaaacattactgggaaggaaaggagtatgacaacttgcctgag
gccttccctattacccttgagtggaatggccgtgtagtccatgaaaccgtctattggttc
cagtatgaagttgatccagcactgaacagtaatgtctacaatgtagcaatgcgccttgtc
acgaaacacttcccaggagagtttggcagtgagattttagtgcagaaggtggtaaacact
gttctgcaccatacagcaaagaagaacccagaggagtaccacccagtggctgtagagggt
gcacacatgcagggtcaagagcaaggaggtggacaggtggtggagtgggatgcaaaccct
ccccaaaaaattatattgactggtcaaaagggccgtaccttacataaagaagagctggtg
atgagtcaagcagagaggaatctgcaacataagattagtgagcaggcagctgtgtcccaa
cgcagacgctcacagcgccagcggctgcaagaccagagtgcagagcctcgctctgcctcc
cctgcccccttctcctcagctccacccacacccactaaaggcctggcccctagtgggcag
aagaagatccgagtgacaaccagtgatgggcggcaggcgacactgcagctgcaagcccat
aatacctatgcagagctgcaggaagccatcacccaagccttcaacttacagccccaccaa
cagtgcatccggcatggctttcctcctcgggaattgcccccaccaccccctgagcatcag
gacttgcctgtggccctgcagcatggagaccgcatcactgtggaagtgcttaaagagagt
gtcccagaccctgaaacaaatatccatactccaatggaaccttggcttggcagaaccagc
agccgagagatacaggacagtgttgacctggagatgtcatcactgtgtctccttgcaaca
cttatgggtgaggatgtgtggtcatatgctaagaagctacctcatctgtttcaacaagga
ggagttttctataacattgtaaagaaagatatgggtctgttggatgggaagcactgcact
ctgccacacctgactggtaagacattcgtgttcaacgcagcagaggatcgtttggagctg
tgtgtggatgctgccggacactttccagtgggccctaatgtggaagaagttatccaagag
gcactgtcccaactgtgttctgagcctccctcacgcaatcgtgagggaagcccttctcat
ggcctaaaactgggcagtggaggggtggtgcgcaagaaagagcagactgttactgctttc
cagggcaagggtcactcactgggctccacctcacatgagcacccgccaatcaggcgagag
cacagcaatggagtggacctgagtggcagcgtagagggagacggtctagcacggtcaaga
gaagagctggtacgtgtcgctccaggcatgctcactctgcgtgaagggtgtcgagaagta
gaattggagcccacagcaattgaggctcagcggcgccgtctacaggaaatggtgtcaaat
atacaggcctctatggacaaacacttacggcagcagacgccacctaacaccattactaat
caggatgagaaggaggaaaatctagaggagcaagataagataaagagccagggtgctgag
cccatggaccagtccttatga
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