Clarias gariepinus (North African catfish): 128513145
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Entry
128513145 CDS
T10780
Symbol
shhb
Name
(RefSeq) tiggy-winkle hedgehog protein
KO
K11988
sonic hedgehog
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
128513145 (shhb)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
cgar01002
]
128513145 (shhb)
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cgar00536
]
128513145 (shhb)
Peptidases and inhibitors [BR:
cgar01002
]
Cysteine peptidases
Family C46: hedgehog family
128513145 (shhb)
Glycosaminoglycan binding proteins [BR:
cgar00536
]
Heparan sulfate / Heparin
Morphogens
128513145 (shhb)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HH_signal
Hint
Peptidase_M15_3
Vint
VldE
Motif
Other DBs
NCBI-GeneID:
128513145
NCBI-ProteinID:
XP_053342778
LinkDB
All DBs
Position
25
Genome browser
AA seq
424 aa
AA seq
DB search
MDLALLLRKLALGPSVRALLLLLLLLAGCARACGPGRGYGKRRLPKRLTPLGYKQFIPNV
AEKTLGASGKYEGKITRNSERFKELTPNYNPDIIFKDEENTNADRLMTQRCKDKLNSLAI
SVMNQWPGVKLRVTEAWDEDGNHFEESLHYEGRAVDITTSDRDKRKYGMLSRLAVEAGFD
WVYYESKAHIHCSVKAENSVAAKSGGCFPGSALVYLSDGSTKQVEDLTEGDRVLAADELG
NIVYSDFIGYLDRDANTHRTFLVLETSELNVTLRLTSGHLVFIRDDSAASGMVAKFASSV
KPGQDVFVWEGWGRLRSARVKRVYAVEDRGSYAPLTTHGTIVVDGVLASCYAAVEEHRLA
HWAFAPLRLSHTLTPTSWWRWIVPNSNATSQQDGIHWYPKMLLQVGMWLLDRDSFHPLGI
PSSS
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atggacctggcgctgctgctccggaagctcgcgctcggcccgtccgtgcgcgcgctgctg
ctgctgctgctgctgcttgccggctgcgcgcgcgcctgcggtccgggccggggctacggg
aagcgcagactcccgaagagactcacaccgctcggctacaagcagttcatccccaacgtg
gcggagaagacgctcggggccagcgggaagtacgagggcaagatcacgcgcaactcggag
cgcttcaaggagctgacccccaactacaaccccgacatcatcttcaaggacgaggagaac
accaacgcggaccggctcatgacccagcgatgtaaagacaagctgaactcgctggcgatc
tcggtgatgaaccagtggcccggggtgaagctgcgcgtgacggaggcctgggacgaggac
ggcaaccattttgaagagtctttacactacgagggccgagcggtggacatcacgacctcg
gacagggacaagagaaagtacgggatgctgtcgagactcgccgtggaggccggattcgac
tgggtttattacgaatccaaagcacacatacactgctccgtcaaagcagaaaactctgtc
gccgctaaatccggcggctgcttccccggatctgcactggtttacctctcggatggaagc
acgaagcaggtggaggatctgacagaaggcgatagggttctcgcagcagatgagctggga
aacatagtgtacagtgatttcatcggctacctggaccgagacgcgaacacacaccggaca
ttcctcgtacttgagacatcggaactgaacgtgaccctgcggctcacttcggggcacctg
gtcttcattcgggatgactcggctgcctctgggatggtcgcaaagtttgcaagcagcgtg
aaacccggacaggacgtgtttgtttgggaagggtggggacgtctgaggagtgcacgtgta
aagcgtgtttacgcggtggaggacaggggctcgtacgcgccgctcaccacacacgggacc
attgtggtggacggtgtgctagcttcgtgctacgctgcagtggaggagcaccgcttggcg
cactgggcttttgcgccgctccgtctgagtcacacactcacgccgacctcatggtggcgc
tggattgtaccaaattcaaatgctacttcgcaacaggacgggattcactggtatcccaag
atgctgctgcaggtcggaatgtggctgctggaccgggactcttttcacccactcgggatt
ccgagctccagctga
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