KEGG   Clarias gariepinus (North African catfish): 128513394
Entry
128513394         CDS       T10780                                 
Symbol
lig1
Name
(RefSeq) DNA ligase 1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
cgar  Clarias gariepinus (North African catfish)
Pathway
cgar03030  DNA replication
cgar03410  Base excision repair
cgar03420  Nucleotide excision repair
cgar03430  Mismatch repair
Brite
Enzymes [BR:cgar01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     128513394 (lig1)
    6.5.1.6  DNA ligase (ATP or NAD+)
     128513394 (lig1)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     128513394 (lig1)
DNA replication proteins [BR:cgar03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    128513394 (lig1)
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     128513394 (lig1)
DNA repair and recombination proteins [BR:cgar03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     128513394 (lig1)
   NER (nucleotide excision repair)
    Other NER factors
     128513394 (lig1)
   MMR (mismatch excision repair)
    Other MMR factors
     128513394 (lig1)
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C
Other DBs
NCBI-GeneID: 128513394
NCBI-ProteinID: XP_053343120
LinkDB
Position
25:complement(13280762..13305255)
AA seq 978 aa
MQRSIASFFQPVKCKEKDGMTKGKSESVKSPLKPQNIDQDCDSPVKMRKRTRAVIDSDDE
EPQVLKEVPKQNGKQTATPGKEKVALVEDTASPLSPNPLLTPTTPAVSEKSGTPEMPVTP
NSTSPSGIPKRRTARKQFPKRKLDSRSDEEREKEEKGKETEGGQKNKRAKIESSPEKMGN
DEEDMEVAQKDRSPVEKEEKAKDEGNITNAKEKNKIQSEDKAAEKEGEKHDLKEKDKEIK
KVTDEGKCSPERVIKKEKDAEEKREGSAKKKPINSFFAPRKAAVKLEKSEEKSDIEKKNG
EKPLAAPASDEKLKKGEKDAEPANQSQFDPSKAHYHPIDDACWKRGQKVPYLAVARTFEK
IEEDSGRLRNIETLSNLLRSVILLSPDDLLCCVYLCLNQLGPAYQGLELGIGETVLMKAV
AQATGRQLDKIKAEAQEKGDLGLVAESSRSNQRMMFAPANLTAMGVFSKLKEIGNMSGNS
AMNKKIDIIKGLFVACRFSEARYIVRSLAGKLRIGLAEQSVLAALSQAVCLTPPGQEFPP
AAIDAGKGMSAESRRAWLEEKGLILKQTYCEMPNFDVLIPVMLKFGIDELPNHCKLTPGV
PLRPMLAHPTKGVGEVMKRFDEAAFTCEYKYDGERAQIHILESGEVRIFSRNQEDNTTKY
PDIISRITQIKKESVVCCVLDTEAVAWDREKKQIQPFQVLTTRKRKDVDASEIKVQVCVY
AFDLLYLNGESLVREPLSKRRALLRESFIEKEGEFVFARSLDSNNTETIAEFLEQSIRDS
CEGLMVKTLEKDATYEIAKRSHNWLKLKKDYLEGVGDTMDLCVIGAYLGKGKRAGSYGGF
LLACYDDENEEFQSVCKIGTGFKDEDLEQHYNFLKEHILPKPRPYYRVDQSAEPDVWLDA
VQVWEVKCADLSLSPVYKAAMGLVDPDKGISLRFPRFLRIRDDKKPEDATTGAQIADLYK
KQQQIQNQAEKADVEDYY
NT seq 2937 nt   +upstreamnt  +downstreamnt
atgcagcgaagtatagcgtccttctttcagccagtgaagtgtaaggagaaggatggcatg
accaaggggaaatctgagtcagttaaaagccccctcaagcctcaaaacatcgatcaggat
tgtgattcaccagtgaaaatgagaaagcggacccgagcagtcattgacagtgatgacgaa
gagccacaggttttaaaagaagtccccaaacaaaatggaaagcaaacggccacaccagga
aaagaaaaggttgcccttgttgaggacacagcgagcccactctcaccaaaccctcttctt
accccaacaacccctgctgtttcggaaaagtctggcactcctgaaatgcctgttacccca
aattccacttcaccctcaggcatcccaaaacgcagaactgcccgtaagcagtttcccaag
aggaaactggacagcaggagtgatgaagagcgagaaaaggaggagaaaggaaaagaaaca
gagggaggacagaagaataaacgagcaaaaatagaatcatctcctgaaaagatggggaac
gatgaagaggatatggaggtggcgcagaaggacagaagtccagtggagaaagaagagaaa
gcaaaagatgaggggaacatcactaatgctaaagaaaagaataaaatacaaagtgaggac
aaggctgctgaaaaggaaggagagaaacatgatttaaaagagaaggataaagaaattaaa
aaggtaacggatgagggaaaatgcagtcccgaaagagtgatcaaaaaagagaaagatgca
gaggagaaacgagagggatctgcaaagaaaaaacccattaacagtttctttgcacccaga
aaagctgcagtgaagctagaaaaatcagaagagaaaagtgatatagagaagaagaatggc
gagaagcctttggctgctcctgcttctgatgagaaattaaagaagggtgagaaggatgcg
gaacctgcaaaccagagtcaatttgacccttctaaagctcactaccatcccattgatgat
gcttgctggaaaagggggcagaaagttccttatctggctgtcgctcggacctttgagaag
attgaagaagattcgggcaggttgagaaacatcgagactctatcgaaccttctgcgctct
gttatcctgctctctccagatgaccttttgtgctgtgtgtacctgtgtctgaatcagctt
ggccctgcctaccaggggctagagctaggaattggggaaacagtactgatgaaagctgtt
gcccaggcaactgggcgtcagctggacaaaattaaggctgaggctcaggaaaagggtgac
ttgggattggtagcagagagttcccgtagcaaccagagaatgatgtttgcaccagcaaat
ctgactgcaatgggcgtgtttagcaaactaaaggagattggcaacatgagtggaaactct
gcaatgaataaaaaaattgacatcattaagggtctgtttgtggcttgtcgtttctcagag
gccagatacatcgtaaggtcattggcaggaaagctgaggattgggttggctgagcagagt
gttttagcagctctgagtcaagcagtatgtctgactccaccaggtcaagaattccctcct
gctgcgattgatgctggaaaggggatgagtgcagagagcagaagagcgtggcttgaggaa
aaaggactcatccttaagcagacttactgtgaaatgccgaattttgatgtccttattcct
gtgatgctgaagttcggcatagacgaacttcccaatcactgcaaacttaccccaggtgtg
ccactgcgtcccatgctggctcacccaactaaaggtgtaggggaggtgatgaaacgattt
gacgaggctgctttcacctgtgaatacaagtatgatggcgaaagagcacagattcacatt
cttgagagtggcgaggttcgcatctttagccgaaaccaagaggacaacaccaccaaatac
cctgacatcatttcacggatcacgcagataaagaaagaatctgtggtttgctgtgtgttg
gacaccgaggcagttgcatgggacagagagaaaaagcagattcagccctttcaagttctt
acaacacgcaaaaggaaggatgtggatgcatctgagattaaggtgcaggtttgtgtgtac
gcctttgacctgctgtacttaaatggagagtctttggtacgggagccactgagtaagcga
cgagcgttgttaagggagagtttcatcgagaaggagggagagtttgtctttgctcgttct
ctcgactctaacaacactgaaactattgcagaattcctggagcagtctatacgagactcc
tgcgagggcttgatggtgaagaccctggagaaagatgccacttatgaaattgccaaacgc
tcccataactggcttaagctgaagaaggattatctggaaggtgtgggggacacaatggat
ctgtgtgtgattggtgcatatctagggaaaggcaagagagctggtagctatgggggtttt
cttcttgcctgctacgatgatgagaatgaggagtttcagtcagtctgtaagataggaaca
ggttttaaagatgaagatctggagcagcattataacttcttaaaggagcacatccttcct
aagccccgcccctactacagagtggatcaatcagcagagccagacgtttggctagatgct
gtacaagtatgggaagtgaaatgtgctgatctgtcgctatcaccggtttacaaggcagca
atgggattggtggacccagataaagggatttcccttcgctttcctcgattccttcgtatc
agggatgacaagaaaccagaggatgctacaacaggagcacagattgctgatctctacaaa
aagcagcagcagattcagaatcaagcagaaaaggctgatgtagaggattattactga

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