Clarias gariepinus (North African catfish): 128514351
Help
Entry
128514351 CDS
T10780
Name
(RefSeq) E3 ubiquitin-protein ligase NHLRC1-like
KO
K10602
E3 ubiquitin-protein ligase NHLRC1 [EC:
2.3.2.27
]
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
128514351
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cgar04121
]
128514351
Enzymes [BR:
cgar01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
128514351
Ubiquitin system [BR:
cgar04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
128514351
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NHL
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
zf-C3HC4_4
zf-C3HC4
WD40_WDHD1_1st
Baculo_IE-1
Prok-RING_4
Motif
Other DBs
NCBI-GeneID:
128514351
NCBI-ProteinID:
XP_053344141
LinkDB
All DBs
Position
26:complement(1138273..1139594)
Genome browser
AA seq
402 aa
AA seq
DB search
MSKSFANPTRRAEDVLDEIHSDLLECKVCFEPFSSDPRARRPRNLPCGHVICLGCVCSLS
HSVSRRLECPFCRKQCDQGGTYECQVLVDLQEMIRSYFPHKTPRDLDGDPGSGVMHLRCA
FGGWGPLINPTGVAVHGESQDVVVAHGGHERVTVLGSRGQYVRSFGRHGHKNFEICHPLD
VAVTPGGHVIVTDAGDRSVKVFSSTGSPVVTVSDLFQLPWGVDVDLSGNILVTDAEAGTL
WQIDMDFERGLVSQKKKTVEDLTTPRAVACCRASGRVAVVEHLQNRESPIGGSRWTRVKV
FSRDYVALEQLDGFSLHPMSLSISSVSFNRNGDLIVADVQQGSVWSLRDVHKAAEVTPLV
REGLVRPVGLAVTNEDALIVLDAGDHTVKTYAPETEDLYSDK
NT seq
1209 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaatcctttgcgaatcccaccagaagagccgaagacgtcctagacgagatccac
tccgacctgctcgagtgtaaagtgtgtttcgaaccgttttcctctgaccccagagcccgg
aggccgcgcaacctcccctgtggtcacgtgatctgtctggggtgcgtctgctccctgtct
cactccgtgtcacgccgcctcgagtgcccgttctgcaggaagcaatgcgatcaaggtggc
acctacgaatgccaggtcctcgtcgaccttcaggagatgatcaggtcgtatttcccacat
aaaaccccccgagatctggatggagatccggggtcaggggtcatgcacctgcgctgcgcc
ttcggagggtggggtccgctcatcaacccgaccggggtggcggtgcacggagaatcgcag
gatgtcgtggtggcgcacggggggcatgagagagtgaccgtgctcgggtctcgtggtcag
tacgtgcgcagctttgggcgccacggtcacaaaaacttcgaaatctgccatcctttagat
gttgccgtgactcccggcggccatgtcatcgtaacagatgcaggagatcgctcggtcaag
gtgttctcgtcgacaggaagtcccgtggtcacggtctcggacctgttccagcttccatgg
ggcgtcgacgtggacctctcggggaacatcctagtgacggacgccgaagctggaaccctt
tggcagatcgacatggacttcgaacgtggcttggtttcgcaaaagaagaagacggtggaa
gatcttacgactccgcgagctgtcgcttgctgcagagcgtctggacgcgtcgccgtggtg
gaacatctccaaaatcgagaaagtcccattggaggctccaggtggacgcgggtgaaggtg
ttcagcagagattacgtcgcccttgagcagctggacgggttcagtttgcacccgatgagt
ctgagcatctcgtccgtaagctttaacagaaacggtgatttgatcgtagctgatgtgcag
cagggaagcgtgtggagtttgagagacgtccataaagcagcagaggtaactccgctcgtc
agggagggactggtgcgtcccgtgggactggcggtgaccaacgaagacgcgctgatcgtc
ctggatgccggagatcacaccgtgaagacgtacgcgcctgaaactgaggacttgtacagc
gataaataa
DBGET
integrated database retrieval system
