Clarias gariepinus (North African catfish): 128514356
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Entry
128514356 CDS
T10780
Symbol
arfgef1
Name
(RefSeq) brefeldin A-inhibited guanine nucleotide-exchange protein 1 isoform X1
KO
K18442
brefeldin A-inhibited guanine nucleotide-exchange protein
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
128514356 (arfgef1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cgar04131
]
128514356 (arfgef1)
Membrane trafficking [BR:
cgar04131
]
Endosome - Golgi transport
Arf GTPases and associated proteins
Arf GTPase associated proteins
128514356 (arfgef1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec7
BIG2_C
Sec7-like_HUS
DCB
Sec7-like_HDS
Type_ISP_C
Motif
Other DBs
NCBI-GeneID:
128514356
NCBI-ProteinID:
XP_053344144
LinkDB
All DBs
Position
26:complement(20145389..20209549)
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AA seq
1863 aa
AA seq
DB search
MYEGKKTKNMFLTRALEKILADKEVKKAHHSQLRKACEVALEEIKAESEKLSSPAGDSKS
SSSTLPPIKSKTTFIEADKYFLPFELACQSKCPRIVSTSLDCLQKLIAYGHLTGSAPDNT
APGKKLIDRIIETICGCFQGPQTDEGVQLQIIKALLTAVTSQHIEIHEGTVLQAVRTCYN
IYLASKNLINQTTAKATLTQMLNVIFARMENQALTNHKISWSMASRKRDRQLQEAKQMER
ERHRQHSPLSQQEPESPQLQQLPDTPAKNQSPSGQEVNGGSGVEGGTAERESPLYESPEP
ENGSDFGPVENEQTEADQATAAEQSAAERGSQAPGEEESLNYEEKAQEIVQSILQEVVSS
VTGDAKESRGVEVEPVATPTSLEEEGGLSSDSENVHANGIPGTPISASFTPSLPDDRLSV
SSSDTQESGAPTGPAPGAKFSHILQKDAFLVFRSLCKLSMKPLSDGPPDPKSHELRSKVL
SLQLLLSILQNAGPIFKTNEMFINAIKQYLCVALSKNGVSSVPEVFELSLSIFLTLLSNF
KTHLKMQIEVFFKEIFLYILETSTSSYDHKWMVIQTLTRICADAQSVVDIYVNYDCDLNA
ANIFERLVNDLSKIAQGRGGHELGTTPLQELTLRKKGLECLVSILKCMVEWSKDQYVNPN
SQTSLGQEKPSEQEANESKHPETINRYGSINSLDSTASSGIGSYSTQMSGTDNPEQFEVL
KQQKEIIEQGIDLFNKKPKRGIQYLQEQGMLGTTPEDIAQFLHQEERLDSVQAGEFLGDN
DRFNKEVMYAYVDQMDFQGKDFVSALRLFLEGFRLPGEAQKIDRLMEKFAARYLECNQRQ
TLFASADTAYVLAYSIIMLTTDLHSPQVKNKMTKEQYIMMNRGINDSKDLPEDYLSSIYD
EIAGKKISMKETKELPLKSNKQSVASEKQRRLLYNVEMEQMAKTAKALMEAVSHVQAPFT
SATHLEHVRPMFKLAWTPFLAAFSVGLQDCDDTEVASLCLEGIRCAIRIACIFSIQLERD
AYVQALARFTLLTASSGITEMKQKNIDTIKTLITVAHTDGNYLGNSWHEIMKCISQLELA
QLIGTGVKARYISGTVRGKEGFITSTKEQSSDEYLGIVGGTVDRKQIASIQESIGETSSQ
SVVVAVDRIFTGSTRLDGNAIVDFVRWLCAVSMDELASPTHPRMFSLQKIVEISYYNMGR
IRLQWSRIWEVIGDHFNKVGCNPNEDVAIFAVDSLRQLSMKFLEKGELANFRFQKDFLRP
FEHIMKKNRSPTIRDMVVRCIAQMVNSQAGNIRSGWKNIFSVFHLAASDQDESIVELAFQ
TTGHIVTNVFEKHFPATIDSFQDAVKCLSEFACNASFPDTSMEAIRLIRHCAKYVSDRPQ
AFKDYTSDDMNVAPEDRVWVRGWFPILFELSCIINRCKLDVRTRGLTVMFEVMKTYGHTY
EKHWWQDLFRIVFRIFDNMKLPEQQTEKAEWMTTTCNHALYAICDVFTQYFESLSHVLLD
NILSQLYWCVQQDNEQLARSGTNCLENVVILNGEKFTAEIWDKTCNCMLDIFKTTIPHAL
LTWKPAGADSAHPTHLDSDKQPDSVSQKSVDIQSRAEDQHSVSSMEKALAENRRQSQFSL
SSEVQEQRLFAALLIKCVVQLELIQTIDNIVFFPATSKKEDAENFAAAQRDSLDTDVHVE
TQDQGMYCYLTSEQLFKLLDCLLESHRFAKAFNSNNEQRTALWKAGFKGKSKPNLLKQET
SSLACGLRILFRMYTDPNRQDAWEDVQRRLLNVCSDAVAYFLTLTSESHREAWTNLLLLF
LTKVLKISDDRFKAHATRYYPLLCEIMQFDLIPELRAVLRKFFLRIGLVFHIAQALEPRE
QEA
NT seq
5592 nt
NT seq
+upstream
nt +downstream
nt
atgtatgaaggcaaaaagacgaaaaacatgtttttaacccgagctctggagaagatcttg
gccgataaggaggtgaagaaggcgcatcactcccagctgcgcaaagcctgcgaggtggca
ctggaggaaataaaagcagagtcggagaaattaagctcccctgctggagatagcaagtcg
agttccagtaccctgcctcccataaaatccaagaccacgttcatcgaagcggataagtac
ttcctgccgtttgagttagcctgtcagtccaaatgtccccgcatcgtcagcacatcgcta
gattgtttacagaaactcatagcttatggtcacctgacgggcagcgccccagataacacc
gccccggggaagaaactcatcgaccggatcatcgagaccatctgtggctgtttccaggga
ccgcagaccgacgagggagtccagcttcagatcataaaggctttgctgacagcggtgacg
tcccagcacatcgagatccatgagggcacggtgctgcaggctgtccggacgtgctacaac
atctacctggccagcaagaacctcatcaaccagacgacggccaaagccaccctcacccag
atgcttaacgtcatcttcgcccgcatggagaaccaggcacttacaaatcacaagatcagt
tggtctatggcatccagaaagcgtgaccgtcagctccaggaggcgaagcagatggagagg
gaaaggcacaggcagcattctccgctcagccagcaggagcctgagtctccacagctccag
cagctcccagacaccccagctaagaaccagagcccgtcaggtcaggaggtcaacggaggg
tcaggggtagagggcggtacagcagagagggaatcccccctctatgagagcccggagccc
gagaacggctctgactttggtcctgtggagaacgaacagacggaggcggaccaggccacc
gccgcagaacagagcgcggccgagcgaggctcacaagctcctggagaagaggagagcctg
aattacgaggagaaagctcaggaaattgtgcagagcatactgcaggaagtggtcagctct
gtgactggtgatgccaaggagagcagaggggtagaggtggagccagtggccacacctaca
tctctggaggaggaaggcggcctgagcagcgacagtgaaaacgttcatgctaatggcatc
ccaggcacgcccatctctgccagcttcaccccgtccctgcctgacgacagactgtctgtc
tcctccagcgacactcaggaatctggtgcaccaacgggacctgcaccgggtgcgaaattc
tcgcacattttgcaaaaagacgccttcctggtgttccgctccctctgcaaactatccatg
aagcctctttcagacggtccacctgatccaaaatcccacgagttgcgttccaaggtgctc
tctctgcagctgctgctctccatcctgcagaacgcaggccccatcttcaagaccaacgag
atgttcatcaacgccatcaagcagtacctgtgcgtggcgctgtccaaaaacggcgtctcg
tccgtccccgaggtcttcgagctgtccctgtcaatctttctcacgcttctgtccaacttc
aaaacccacctcaagatgcagatcgaggtctttttcaaagagatcttcctgtacatcctc
gagacgtctacaagctcatatgaccacaaatggatggtcattcagacgctcacaagaata
tgtgcagatgcccagagcgtggtggacatctacgtgaattacgactgcgacctgaacgct
gctaatatttttgagaggctggtgaacgacctgtcgaagatcgcgcagggccgaggaggc
cacgagctcggcacgacaccgctacaggagctgacattaagaaagaagggtctggagtgc
ctcgtctcaatcctcaagtgcatggtggagtggagtaaggatcagtacgtcaaccctaac
tctcagaccagtctcggccaggagaagccttctgagcaggaggccaacgagtccaagcat
ccagagaccattaatcgctatggcagcattaactctctggactccacagcttcctcgggc
atcggcagctacagcacgcagatgtccggcaccgataatcctgagcagttcgaagtgctc
aaacagcagaaggaaatcatcgagcaaggcattgacctgttcaacaaaaaaccaaagagg
ggcattcagtatctgcaggagcaaggcatgctgggaacaacgccagaggacatcgctcag
ttcttacatcaagaagagaggctggattccgtccaagccggagagtttctgggagacaac
gatcgtttcaacaaggaagtgatgtatgcctatgttgaccaaatggacttccaagggaag
gactttgtgtccgccctgcgtctgttcctggagggcttccggctccctggagaagcccag
aaaatcgatcgtctcatggaaaaatttgctgctagatatttagagtgcaaccagcggcaa
accctgtttgcatctgcagacacagcatatgtcctcgcttattcaatcatcatgttaact
acagaccttcatagtccacaagtgaagaataaaatgacaaaagagcaatacataatgatg
aacagagggatcaacgacagtaaagatttgccggaggactacttgtcatccatttacgat
gaaatcgcagggaagaagatatctatgaaggagacaaaggaattgccactcaaatctaat
aaacaaagtgtggccagtgagaaacagcgacggctgctgtacaatgtggagatggagcag
atggcgaagacagctaaggctctgatggaggcagtgagccacgttcaagccccatttacc
agcgccacccatctggaacacgtcaggcctatgtttaagctggcctggactccgttcctg
gcagcctttagcgtgggtctgcaggactgcgatgacaccgaggtagcgtctctgtgtctg
gagggtatccgctgcgccatccgaatagcctgcatcttctccatacagttggagagagac
gcatacgtgcaggccctggctcgcttcaccttgctcacagccagctcggggattacagag
atgaagcagaagaacatcgatactatcaagacgcttatcacggtggctcacactgatggg
aattacttggggaactcgtggcatgagattatgaagtgcattagtcagttggagctggcc
cagctgatcggcacaggggtgaaggctcgctacatatccgggactgttcggggcaaagag
ggcttcataactagcaccaaagagcagagttcagacgagtacctgggtatcgttggtggg
accgtagatcggaagcagattgctagcatccaagaatccatcggcgagaccagctctcaa
agcgttgtggttgccgtggacaggatatttacaggatccactcgactagatggcaacgct
atagtcgattttgtgcgttggctgtgtgccgtttccatggacgagctggcctctccaacc
cacccgcgcatgttcagcctgcagaagatcgtagagatctcttactacaacatgggccgc
atcaggctccagtggtccaggatctgggaggttataggagatcatttcaacaaggtcggc
tgtaatcccaatgaggatgtagccatctttgccgtggattcactcaggcagttatccatg
aagtttttggagaagggggaactggccaactttagatttcagaaggatttcttgaggccg
tttgagcacatcatgaagaagaacagatcgcccactatcagagacatggtggtgcgctgc
atagctcagatggtaaactcgcaggcgggaaacatccgctcaggctggaagaacattttc
tcagtgttccacctggcagcctcggatcaggacgagagcatcgtcgagctcgccttccag
accactggacacatcgtcacgaatgtatttgagaagcactttcccgccaccatcgactcc
tttcaagacgccgtcaagtgtctgtcagagttcgcctgcaacgcttcgttccctgacacc
agcatggaggccatccgtctgattcgccactgcgccaaatacgtctccgacaggcctcag
gcgtttaaagactacactagtgacgatatgaatgtagccccagaggaccgggtgtgggta
cgaggctggttccccatcctgttcgagctctcctgtatcatcaacaggtgcaagctggac
gtcagaaccaggggtctgacggtgatgtttgaggtgatgaagacttacggtcacacgtac
gagaaacactggtggcaagacctgttccggatcgtcttcaggattttcgacaacatgaag
ctcccggagcagcagaccgagaaagcagagtggatgaccacaacctgcaaccacgcactt
tacgcaatctgtgacgtcttcacgcagtacttcgagtctctcagtcacgtcctgctagac
aacattctctcacagctctactggtgtgtgcagcaagataacgagcagctggcgaggtct
ggaaccaactgcttggagaacgtagtgatcctgaacggagagaagttcacagccgagatc
tgggacaagacctgcaactgcatgctggacatctttaagaccaccatcccacacgcgttg
ctcacgtggaagccggccggtgcggacagcgctcacccgactcacctagactcggataaa
caaccggactccgtgtcccagaagtctgtagacatccagagccgggcagaggaccagcac
tcggtgagcagtatggagaaggcgctggcggagaatcggagacagagtcagttcagtttg
tcttcagaagtccaggagcagaggctgttcgcagcgcttctcatcaagtgtgtggtgcag
ctggagctcatacagaccatcgacaacatcgttttctttccggccaccagcaagaaggag
gacgcagagaacttcgcggcagcacagagagatagcctggataccgacgtccacgtggag
acgcaggatcaggggatgtactgctatctgacctcggagcagctgtttaaactgctggac
tgcctgctggagtcgcaccgttttgctaaagccttcaactccaacaacgagcagaggacg
gcgctgtggaaggccggttttaaagggaagtccaaacccaacctgctgaaacaggagacc
agcagtctggcctgtggcctgcgcatcctgttccgcatgtacacggacccgaacagacag
gacgcctgggaggacgtgcagagacgcctgctcaacgtgtgcagcgacgccgtggcttat
ttcctgacgctgacgtcagagtctcaccgcgaggcctggaccaacctgttgctcctcttc
ctcaccaaagtgctaaagatcagtgatgaccggttcaaagcccatgccacccgttactac
ccgctgctgtgcgagatcatgcagttcgacctgatccctgagctgagagccgtgctgagg
aagtttttcctgcgcatcgggctcgtgttccacatcgctcaggcgctggaaccgcgcgag
caagaggcctag
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