Clarias gariepinus (North African catfish): 128514413
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Entry
128514413 CDS
T10780
Symbol
rnf6
Name
(RefSeq) E3 ubiquitin-protein ligase RNF6
KO
K22753
E3 ubiquitin-protein ligase RNF6 [EC:
2.3.2.27
]
Organism
cgar Clarias gariepinus (North African catfish)
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cgar04121
]
128514413 (rnf6)
Enzymes [BR:
cgar01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
128514413 (rnf6)
Ubiquitin system [BR:
cgar04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
128514413 (rnf6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNF6_N
zf-RING_2
zf-rbx1
zf-C3HC4_2
zf-C3HC4
zf-RING_11
zf-ANAPC11
zf-C3HC4_3
zf-RING_5
zf-RING_UBOX
zf-RING_4
zf-RING-like
zf-P11
Prok-RING_4
zf_RING_Vps8_fungal
Motif
Other DBs
NCBI-GeneID:
128514413
NCBI-ProteinID:
XP_053344233
LinkDB
All DBs
Position
26:21773630..21779985
Genome browser
AA seq
686 aa
AA seq
DB search
MDPPGGRDERRRQAERLRREEAYYHFINELSEEEYRLMRDSNLLGTPGEVTAEELRQRLD
GAKERVSSQPRAEPRPQNSEAGQEGSSAAAEPGAESTNGDSLLEWLNTFRRTGNATRSGQ
SGNQTWRAVSRTNPNSGEFRFSLEININHEQPEPGEHSDASDAIELPVSQRASATIRTPP
RPAPYFTQHPAPYPTTRPTLGRRAQARRTRSSTTPPITPPLISQAPYTSLRRSLALSQPA
PLPPPPPPPPPPPPPPPPPSQTMSTSLPQEQDSTNSVQGQVQPHPPSLGNEEEQEANDAP
DCPEAASQSGAQGAPAGREARRTRSRGRVRRIALSRSSRRSRSPLDRNPARSSSPTPSNS
APAIESTGNTAAVEMVEIPAESAAPVESAPEASTEEGETPASGSAGGVRRHPTIMLDLQV
RRIRPGENRDRDSIASRTRSRARAAENTVTFESDSGGFRRTISRSERAGIRTYVSTIRIP
LRRISETGLGEPSSTALRSILRQIMTGFGELSSLMETEADPESSTPGQNAGTNTAAQTQR
AQGSESTTGNAVPDSGRESGVVGGAGQARVGTNGRDTNNLVENGTLPILRLAHFFLLNDE
EDDEHPRGLTKEQIDNLATRTYGQASLEGEQGRACSVCINEYAQGNKLRSLPCAHEFHIH
CIDRWLSENNTCPICRQPILSSSHQD
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atggaccctcccggcgggcgagacgagcgtcgtcgtcaggccgagcgtcttcggcgggag
gaggcgtactaccacttcatcaacgagttaagcgaggaagagtatcggctcatgagagac
agcaatctattgggcacaccaggtgaagtaacagctgaagagctgagacagcgtctggac
ggagcgaaggagcgtgtgtcctcacagcctcgcgctgaaccacgtccgcagaacagtgag
gcaggacaggagggcagcagcgctgccgctgagcctggtgccgagagcactaacggagac
tcgctgctggagtggctcaacacgttccggcgcacaggcaacgccactcgcagcggccag
agcggcaaccagacgtggcgcgccgtcagtcgcaccaatccgaacagtggcgagtttcgc
ttcagcctggagatcaacatcaatcacgagcagcccgagccgggcgaacatagcgacgcc
tcagatgccatcgaacttcctgtctcgcagcgagcctctgcgactatacgtaccccgccg
aggcccgcgccctatttcacgcagcaccctgcgccttatcctacaaccaggcccaccctg
gggaggcgtgctcaagcccggcgcactcgcagtagcaccacgccacccataaccccgcct
ctcatttctcaggcgccgtatacaagtttaagaaggagccttgctttgtctcagccagca
ccgcttcccccacctcctcctcccccacctcctcctcctcctcctcctccccctccttca
cagaccatgtctacgtccctgcctcaggagcaggacagtactaacagcgtgcagggtcaa
gtacagccgcaccctccttcgcttggcaacgaggaggagcaggaagctaacgatgctcca
gactgtccggaagctgcttctcagtccggtgcgcagggggcgccagccggccgtgaggct
cggagaactcgttcacgtggccgggtccgccggatagctctgtcccggtcctcacgtcgt
agccgctctcctttggataggaaccccgcccgaagctccagccccacccctagcaatagt
gctcccgccatagagtccaccggaaacactgcagctgtagagatggtggaaattccagct
gagtcggcagcaccggtggaatctgcccccgaggcgagtactgaggagggcgaaacgcct
gcctcgggctcagcgggaggcgttcgccgacaccccaccatcatgttggatttacaggtg
cgcagaatccgaccaggcgaaaaccgagaccgggatagcatcgctagccgcacgcggtct
cgtgcccgtgctgctgaaaatacggtcacctttgagagcgacagtggaggcttcagacgg
accatctcgcgctcggaacgcgccggaatccgcacctacgtgagcactatccgcatccct
ctgcgccgcatctcagagacgggtttgggcgagccgagctccacggcgctgcgctccatc
ctgcggcagatcatgaccggcttcggagagctcagctctttaatggagaccgaggccgac
ccggaaagctccacccctggacagaacgcgggcaccaacacggctgctcagacacagcgt
gcgcaggggagcgaatccacgacggggaacgccgtgcctgattcggggcgagagagcgga
gtagtcggtggggccggccaggcgcgggtgggcaccaatggaagggacacgaataacctt
gtggagaacggcaccttgcccatcctgcggctggcgcacttcttcttgctgaatgacgag
gaggacgacgagcatccgcgcggtctcaccaaagagcagatcgacaatctagccacgcgc
acctacggccaggcgagcctggagggcgagcaggggcgcgcgtgcagcgtgtgcatcaac
gagtatgcgcagggcaacaagctgcgcagcctcccctgcgcacacgagttccacatccac
tgcatcgaccgctggctctcagagaacaacacgtgtcccatctgcaggcagcccattctg
tccagtagccatcaggactga
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