Clarias gariepinus (North African catfish): 128514651
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Entry
128514651 CDS
T10780
Symbol
taf1b
Name
(RefSeq) TATA box-binding protein-associated factor RNA polymerase I subunit B
KO
K15213
TATA box-binding protein-associated factor RNA polymerase I subunit B
Organism
cgar Clarias gariepinus (North African catfish)
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cgar03021
]
128514651 (taf1b)
Transcription machinery [BR:
cgar03021
]
Eukaryotic type
RNA polymerase I system
Basal transcription factors
SL1/TIF-1B
128514651 (taf1b)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Rrn7_cyclin_C
Rrn7_cyclin_N
Zn_ribbon_RRN7
DUF3099
Motif
Other DBs
NCBI-GeneID:
128514651
NCBI-ProteinID:
XP_053344419
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All DBs
Position
27:complement(10853196..10864328)
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AA seq
569 aa
AA seq
DB search
MDEEITDGYSEPCGLCGLVCWGVSDGGQLFCKNCHNVIERTREVEDMNTLLFNHRISTFS
SGKRKRGGREGARDWMVCEGFQLILKHQAEALVDLGVCPQFKTDVLWIFWKRYLQKTKQA
YTRNPVNSDRSLVEWTSDSGAVSSVAFSEASWHDETASVKGDHKVSGYSSDGRSSVCSGS
MDAEHYFRRRERKYLMSMSRTLALCHLALLWVREAITLADLLRLVSKGHIPYINAHELFP
EEMRFFGKDALIFRVESIPSYRKVHRETVELAALIELPTFPPVSQDCLLHPALLSLRYLM
DANLPDKLHELVCKVIQATSMGNESFLTFDPTGRKPKLLCYDLQAAALIVVTMKLLFRLD
DKMEWKLARKACDKGNKMDQGWKKKKKGKGGKMFSLRTWFMILQPALERAREKEKHAKAM
QQWKSKKTIIQSMKNKTIVLKRRRVVEQLQSTFQALSGSAPEQEPSSSSTFFFLWGDEDG
ADGPSFRNKCLDCLMIKRQKIWHLVNRKYWHTDLRKCLSWCKEHFSDLGPTLPRMYVWLL
GLFSFMLGVEDAQLHSAVVQVEQRLLTKS
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atggacgaagagataacagacggttacagtgagccatgtggactttgtggcttggtgtgt
tggggtgtttcagacggagggcaattattctgtaaaaactgccataatgtgattgagaga
acaagggaagttgaggatatgaacacattgctgttcaaccacaggatctccactttctca
tcaggcaaacggaagcggggtggaagagaaggtgcacgagactggatggtatgtgaaggc
tttcagctgatcctcaaacatcaagctgaagctttggttgatctgggtgtctgccctcag
tttaagacagatgtgttatggattttctggaagcgatacctgcagaagaccaaacaggca
tacacaagaaatccagtgaacagtgacagaagtttagtggaatggaccagcgacagtggg
gcagtatcatctgttgctttcagtgaagcatcatggcatgatgagactgcctcagtgaag
ggagaccacaaagtctcgggatactctagtgatgggagatcttcagtgtgttcaggctct
atggatgccgaacactactttagaaggagagaaagaaagtacctgatgagcatgtcccga
acactggcactctgccatctggctctgctttgggttcgggaggctattactctggcggac
ttgctcaggttggtatccaagggccacatcccttatattaatgctcatgaactttttcca
gaagagatgaggttctttggtaaagatgccctgatttttagagtcgagtctatcccctct
tacagaaaggttcatagggagacagtggaactggctgcactaatcgagctgcccactttc
cctccggtgtctcaggattgcctccttcatccagctctgctcagtctacgctatttgatg
gatgctaaccttcctgacaaactccatgaattggtttgtaaagtaatacaggcaacatct
atggggaacgaatcctttctgacatttgatcctactgggagaaagcctaaacttctgtgc
tatgatcttcaggctgcagccttaattgttgtgaccatgaagcttctgttcaggctggac
gataagatggagtggaagttggctaggaaagcatgcgacaaaggaaataaaatggaccag
ggctggaaaaagaaaaaaaaaggcaaaggtggaaagatgtttagcctaaggacgtggttt
atgattttacagccggcactggaacgagccagggaaaaagaaaagcatgccaaggccatg
caacagtggaaatctaagaagaccatcattcaatctatgaaaaataaaaccatcgtacta
aaacggagacgtgtggtagaacagctgcagagcacttttcaagctctttctggctcagct
ccagagcaggagccttcctcctcatccactttcttctttctctggggagacgaagatgga
gctgatggacccagttttcgtaacaagtgcctggactgtttgatgattaaaaggcaaaaa
atctggcaccttgtcaaccgtaaatattggcacactgacttgaggaagtgcctttcatgg
tgtaaagaacacttctctgacctagggcctactttgcccaggatgtatgtgtggttgctg
ggcctcttctctttcatgctgggtgttgaagatgcgcagttgcacagtgcggttgtccag
gtggagcaacgactgctgacaaaatcttga
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