Clarias gariepinus (North African catfish): 128514895
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Entry
128514895 CDS
T10780
Symbol
cpsf3
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
128514895 (cpsf3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cgar03021
]
128514895 (cpsf3)
03019 Messenger RNA biogenesis [BR:
cgar03019
]
128514895 (cpsf3)
Transcription machinery [BR:
cgar03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
128514895 (cpsf3)
Messenger RNA biogenesis [BR:
cgar03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
128514895 (cpsf3)
U7-dependent histone pre-mRNA processing factors
128514895 (cpsf3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
PAP-OAS1
Gp58
Motif
Other DBs
NCBI-GeneID:
128514895
NCBI-ProteinID:
XP_053344774
LinkDB
All DBs
Position
27:complement(10924847..10938918)
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AA seq
690 aa
AA seq
DB search
MATKRKSDVAVPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDAL
PYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSYKGRTFMTHATKAIYRWLLSDYVKV
SNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVK
ILYTGDFSRQEDRHLMAAEIPSVKPDILITESTYGTHIHEKREEREARFCNTVHDIVNRE
GRCLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKI
RKAININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVI
IAGYCVEGTLAKHIMSEPEEITTMSGQKLQLKMSVDYISFSAHTDYQQTSEFIRALKPPH
VILVHGEQNEMARLKAALILEYEENDEERIEVHNPRNTEAVTLNFRGEKLAKVMGSLADK
KSVQGQRVSGILVKRNFSYHILTPSDLSNYTDLSMSTVKQTQAIPFTGPFSLLHSQLRHL
AGHVEEVETAEKTTLRIFNSITLIHDSNMVILEWIANPLNDMYADAVTTVVLEVQSNPKA
QKLIQPKEEKVDLDVFRERLQIMFQDMFGDECVDFKDKNKLSVTVDGKTAYINLETRTVE
YEEGIADEESLRDMVEHAVQRLYDAMNPVM
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atggctactaagcgtaagtcagacgtggccgtgccggctgaggaaagtgaccagcttctc
ataagacctctgggcgctggtcaagaagtgggcagatcatgcatcattttggaattcaaa
ggacgtaaaattatgctggactgtggtatccaccccggtttagagggaatggatgcactg
ccttacattgatttgattgatcctgctgaaatcgatctcctcctcatcagccactttcat
ctcgatcactgtggagcactgccctggtttttacagaaaactagttataaaggaaggact
ttcatgacccatgcaaccaaagccatttaccgttggcttctttcagactacgtcaaagtc
agtaatatctcagcagatgacatgttgtacacagagacagacttggaagaaagcatggac
aagattgagacgatcaacttccatgaggtgaaagaggtggctggcattaagttctggtgc
taccatgctggccatgtcttgggtgcagccatgtttatgatcgagattgctggtgtaaag
attctttatacaggagatttctcgcgtcaggaagacagacatttaatggcagcagagatc
cctagtgttaagccagacatcctaattacagagtccacctatggaacccacatccatgag
aagagagaggaaagagaagctcgtttttgtaacacagtccacgatattgtgaacagagaa
ggccgctgtctcatccccgtcttcgctctgggtcgagcacaggagctcttgctcatcctt
gatgaatattggcagaatcatcctgaacttcatgacattcctatttactatgcatcatcc
ctggccaaaaagtgtatggccgtgtaccagacttatgtcaacgccatgaacgacaaaatc
cgcaaagccatcaacatcaacaaccccttcgtctttaagcacatcagcaacctcaagagc
atggatcatttcgatgacatcggccccagtgtggtgatggcgtctcctggaatgatgcag
agtggcctctccagagagctgtttgagagttggtgtactgacaagaggaacggtgtgatc
atcgcaggctactgcgtggagggaacacttgccaagcacatcatgtccgagcccgaggag
atcactactatgtcgggtcagaagctgcagctgaaaatgtctgtggactacatttccttc
tcagctcacactgactaccagcagaccagcgagtttatccgagcgctcaaaccgccccat
gtgatcctggtgcatggagagcagaatgagatggcccgactgaaggcggctctcatttta
gaatatgaggaaaatgatgaagagcgtatcgaggtccataatccccgcaacactgaggca
gtcacactcaactttagaggagagaaactggccaaagttatgggttctcttgctgataag
aagtctgttcagggtcagagggtctctggtatcttggtcaaacgcaacttcagttatcat
atcctcacaccttcagacctctccaattacacagatttgtctatgagcacagtgaagcag
actcaagccattcccttcactggacctttctcccttctgcacagccagctacgccactta
gcaggacatgtcgaagaggtggagacagcagagaaaaccacactaaggatctttaacagc
atcacattgattcatgattccaatatggtcatcctggagtggattgccaaccccctgaat
gatatgtatgctgatgcggtcacgactgtagttctggaggttcagtcaaatcccaaagct
cagaaactcatacagcccaaagaggagaaagtggacctggatgtttttcgggaaaggcta
cagatcatgttccaggatatgtttggtgatgaatgtgtagactttaaggacaaaaacaaa
ttgtctgtaacagtggatggcaagactgcctacattaacctggagaccaggacggtggag
tatgaggaaggcattgcggatgaggagtcgctccgagacatggtggagcatgctgtgcag
aggctttatgatgccatgaaccctgtgatgtga
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