Clarias gariepinus (North African catfish): 128514966
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Entry
128514966 CDS
T10780
Symbol
vps18
Name
(RefSeq) vacuolar protein sorting-associated protein 18 homolog
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar04140
Autophagy - animal
cgar04142
Lysosome biogenesis
cgar04145
Phagocytosis
cgar04148
Efferocytosis
cgar05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
128514966 (vps18)
04142 Lysosome biogenesis
128514966 (vps18)
04140 Autophagy - animal
128514966 (vps18)
04148 Efferocytosis
128514966 (vps18)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
128514966 (vps18)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cgar04131
]
128514966 (vps18)
Membrane trafficking [BR:
cgar04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
128514966 (vps18)
Hops complex
128514966 (vps18)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pep3_Vps18
VPS18_solenoid_2nd
VPS18_solenoid_1st
VPS18_RING_C
Clathrin
zf_RING_Vps8
zf-RING_16
aq_1631
zf-ANAPC11
Apolipoprotein
DUF5600
zf-RING_5
zf-RING_2
zf-rbx1
DUF7291
zf-C3HC4_2
KNOX2
STX17_N
LETM1_C
DUF1664
Motif
Other DBs
NCBI-GeneID:
128514966
NCBI-ProteinID:
XP_053344894
LinkDB
All DBs
Position
27
Genome browser
AA seq
978 aa
AA seq
DB search
MATILDDYEDSQMLRHPTQARRLPAAGMIGITHSGFVNLRLEEEKPIFNKQRIDFSPPER
INQLAVCNNQLCMSLGKDTLLRIDLGKPDQLNQIELGRKDDGKVHKLFLDPTGSHLVISL
TTSECVYLNRNTQKVRSLSRWRGHLIESVGWNKILGNETNTGPILVGTSQGIIFEAEISA
SEGSLFNTNPDQYFRQVHSLEEDGNPAPVCCLEVERGIESKYLIIATTRKRLFQFVGKLA
EGSEQQGFSSIFSQNQDLCPSFQEFPVNMGYSEIGFYTCKLRSSPNSFAWMMGNGVYYGN
LDYSRLDSLLTDVRVWEYTPDIDFSYSKPISIVLTQFHFLLLLPDRVKAICTLNGQVVYE
DVFPDKFGPLKKMIKDPVGGLVWIYTEKAVFRYHIQRESRDVWQMYMSMKKFDLAKEYCK
DRPECKDVVLAKEAEHWFQSKRYLESAKCYALTQNYFEEVALKFIEAKQEEALKEFLLRK
LDSLKSGEKTQITLLVTWLTELYLNRLGGLDGNDSKKALFQETREEFHRFMSSIKHKDCF
YNNRSTIYDLLASHGNVDDMVYFSVIMQDYERVISHHCQHDDYAAALDVLSKHCDEKLFY
KFSPVLMQHIPKKVVDAWIQMGNRLDPKQLIPALVNYSQIGSTQQINETIRYMEFCVNEL
GVKEEAIHNYLLSLYAKYKPDSLLWYLEQAGTHASEIHYDLKYALRLCAEHGYRQACVLV
YRIMELYEEAVDLALQVDVDLAKSCADLPEDDEELRKKLWLKIARHVVQEEKDVKKAMNC
LSSCNLLKIEDILPFFPDFVTIDHFKEAICLSLEEYNQHIEELKQEMEEATESAKRIRED
IQEMRNKYGVVESQEKCATCDFPLLNRPFYLFLCGHMFHCDCLFQEVTPHLSGYKQSKLE
ELQKKLAAATQTTKSRHRPKEEDTESLGKGQGGREQIKSDIDDMVASECAYCGELMIRSI
DKPFIDPNRFEEEKSSWL
NT seq
2937 nt
NT seq
+upstream
nt +downstream
nt
atggcgactattctggatgactatgaggactctcagatgctcagacacccgactcaggcc
aggcgccttcctgcggccggtatgatcgggataactcactcaggtttcgtgaacctgagg
ctggaggaagaaaagccgatcttcaacaagcagaggatcgatttctcgccgcctgaaagg
atcaatcagttggctgtgtgcaacaatcagctgtgcatgagtcttgggaaggacactctg
ctcaggatcgatctggggaaaccggatcagctaaaccagatcgagctgggaagaaaagac
gatggtaaagtgcacaaactcttcctggacccgacaggatctcacttggtgatcagtctg
accacgagcgagtgcgtctacttgaacagaaacacacagaaggtccgcagcctctctcgg
tggaggggacacttaatagagagcgtgggctggaacaagattctgggcaacgaaacaaac
accggcccaattcttgtcggaaccagccaaggcatcattttcgaggcggaaatctcagct
tctgagggttcccttttcaacacaaacccggaccagtacttcagacaggtccattccttg
gaagaggacggaaacccggcaccggtctgctgccttgaggtggagcgcgggattgagtcg
aagtacttaattattgccaccactcgcaaacgcctcttccagttcgtcggcaagttagcc
gagggttctgagcagcaaggctttagctcgatcttttctcaaaatcaggatctctgccca
agctttcaggagtttcctgtcaacatgggctacagcgagatcggtttctacacctgcaaa
ctccgttcaagccctaactccttcgcctggatgatgggaaacggggtttattacggcaac
ttggactactcgcggctcgactcgctcctcaccgacgtccgggtttgggaatacacgcca
gacatcgacttcagctacagcaagcccatctccatcgttctcacccagttccatttcctg
ctcctgcttcccgatcgagtcaaggccatctgcaccctgaacgggcaggttgtctacgag
gacgtcttcccggataagttcggccccctcaaaaagatgattaaggatcccgtcggcgga
ctggtctggatctacacagagaaagccgtcttccggtatcatatccagagggagtccagg
gatgtctggcagatgtacatgagcatgaagaagttcgacctggccaaagagtactgcaag
gatcgacccgagtgcaaggacgtggtgcttgccaaggaagcggagcactggttccagagc
aaacgctatctagagagcgccaagtgctacgccctgactcagaactactttgaagaggtt
gcgctgaagttcatcgaagccaagcaggaggaggctctgaaggaattcctgttgcgcaaa
ctggacagtctcaaatccggcgagaaaactcagatcacgctgctcgtcacctggttgacc
gagttgtacctgaaccgtctcgggggactggacgggaacgacagcaagaaagcgctgttt
caagaaactcgggaggagtttcatcgttttatgtcaagcatcaagcacaaggactgcttc
tacaacaaccggagcaccatctacgatctcctggcaagccacggcaacgttgatgacatg
gtctatttttccgtcatcatgcaggactacgaaagggtcatctctcaccactgccagcat
gatgactacgccgccgcgctcgacgtcctctccaagcactgcgacgagaagctcttctac
aagttctccccggttctcatgcagcacatccccaagaaagtggtggatgcctggatccaa
atgggcaaccggctcgaccctaagcagctgatcccagcgctggtgaactacagccagatc
ggcagcacccagcaaatcaacgagaccatccgttacatggagttctgcgtgaacgagctt
ggcgtgaaggaagaggccatccacaattatctgctgtcgctctacgccaagtataaacca
gattccttgctgtggtacctcgagcaggcgggaacgcacgcctcggagatacactacgac
ctgaaatacgccttgcgcctctgtgctgaacacggctatcgccaggcgtgcgtgttggtc
tacagaatcatggagctgtacgaagaagctgtggatttagccctgcaggtggacgtcgat
ttggccaagtcgtgcgccgacctccccgaggacgatgaggagctaaggaagaagctgtgg
ctgaagatcgcccgtcacgtggttcaggaggagaaggacgtgaagaaggcgatgaactgc
ctctccagctgcaacctgctgaagatcgaggacatcctgcctttcttcccagactttgtt
actatcgaccacttcaaggaggccatctgcctctcactggaggagtacaaccagcacatc
gaggagctcaagcaggagatggaggaggccacggagagcgccaagcgcatcagagaggac
atccaggagatgaggaacaagtacggcgtggtggagtcgcaggagaagtgcgccacctgc
gacttccccttactcaaccggcccttctatctcttcctgtgcggacacatgttccactgc
gactgcctcttccaggaggtcacgccgcacctatcagggtacaagcagagcaagctggag
gagctgcagaagaagctcgccgccgccacgcagaccaccaagtctcgccacagacccaag
gaggaggacacagagagtctggggaaaggccagggcggcagagagcagatcaaatccgac
atcgatgacatggtggcgtccgagtgcgcctactgcggcgagctgatgatcagatccatc
gataagcctttcatcgatccaaacaggttcgaggaggaaaagtccagctggctctga
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