Clarias gariepinus (North African catfish): 128515152
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Entry
128515152 CDS
T10780
Symbol
taf4b
Name
(RefSeq) transcription initiation factor TFIID subunit 4 isoform X1
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
128515152 (taf4b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cgar03021
]
128515152 (taf4b)
03036 Chromosome and associated proteins [BR:
cgar03036
]
128515152 (taf4b)
Transcription machinery [BR:
cgar03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
128515152 (taf4b)
Coactivators
SAGA/TFTC/STAGA complex
128515152 (taf4b)
Chromosome and associated proteins [BR:
cgar03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
128515152 (taf4b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
TAF
TraP
Motif
Other DBs
NCBI-GeneID:
128515152
NCBI-ProteinID:
XP_053345177
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All DBs
Position
27:6429996..6444089
Genome browser
AA seq
853 aa
AA seq
DB search
MSESESANEFRQTDDSAENARQSRAAAASCAQVSGQHQHAHEAGSASHSSAKESVLTEER
KTPSSEAMQKHPADAEVSSTGMISSPATPVTSSVTSASMPPTPKVLVSSAAVRSATPLVV
GARVVSAAVTAAGATGQTSVSTVMSNQVRPPAVTQAPIRAAVMTLPRASTSPQNITVARS
PQTTPLQLPANFQIPQGMVLIRSDSGQLMLVSQQALAQAQAQGLVPKTSVTTNVRPQAPQ
ATATSIIRVSLPSSSTTVATLVKPASPAIKTVLKPSSTVGTSTIKPSTTGNSTIIKPPSV
LGAALKPGSITGPTIIKATSAQKPPISTTTGNINQRTVTTTSVNTTSVVKSIGQASVSSA
VTQSIRTAASGLRNLSPNIPIKVGGSSSSKASTQVMVTPETLENVKKCKNFLITLMKLAS
SGTRSPDMAQNVRALVKDLLDGRLEAEEFTEKLYMELKSSPQPYLVPFLKRSLPAVRQLT
PNSQHFIQQCEQPKTSSSSTVSSSAQKIALSSSPTISQPLRGSVPARPPQMVTRQTKGVI
VEQRVTSSPRVGLLVQNHTQPKQPIIQTNTQAAGAFRRQYSLQASKTPSAPTQAAQTHNF
KDSTSGSFREDDDINDVASMAGVNVNEENARILASSSELVGTVVRSCRDEPFLQTTALQH
RVLQIGNSLGVEEVNPDVLGLLSHATQERLRDLVEKLTVIAHHHYISYRDDWRNIQTSDT
RSQLKFLEQLEKVEKQRREEEERETLLRIAKSRSSSEDPEQLRLKQRAKEMQQLELAQME
HRDANLAALAALGPRKRKPLDSSSLGTNQVLGLRAHRTAQRVPTRVTFRDLIFCMEQDRT
LRHTLTLYNAFLR
NT seq
2562 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaaagcgaaagcgcaaacgaatttcggcaaaccgacgattcggcagaaaacgcg
cgccagtctcgagcagcagcagcctcgtgcgctcaggtatcaggtcaacaccagcatgcg
cacgaggccggcagcgcgtcacacagctcagccaaggagtcagtactcacagaggaaagg
aaaaccccttcatcagaggcaatgcaaaagcaccctgctgatgctgaagtttcttccacg
ggcatgatctccagtcctgctacacctgtgacatccagtgtcacatctgcctccatgcct
ccaacaccaaaagtcctggtcagctctgcagctgtcaggtctgccacaccactggtggta
ggggcgagagtggtgtcagcagctgtaacagcagctggggcgactggacagacctcggtg
tcgaccgtgatgtctaaccaggtgagacctccagcagtgacccaggctccgatccgagca
gcggtcatgacgttaccgagggcctcgacttcgccacagaacatcacagtggcacggagt
cctcagaccacacctctccagctgcctgctaacttccagattccacaaggtatggtttta
attcgcagtgatagtggccagttgatgttggtttcccaacaggctttggctcaagcccag
gcccagggcttagtgcccaaaacatccgtcactacaaatgtaagaccacaagcccctcag
gcaacagcaacatctatcatcagagtctctctcccatcttcatctactacggtagccacc
ttggttaaacctgcctcgccggcaataaagactgttctgaaacccagctccaccgtgggc
acttccacaatcaaacccagcactactggaaacagcactattattaaacccccctcagtg
ttaggggctgctcttaagccgggctccattacagggcccacgatcattaaagctacctct
gctcagaaacctcccataagcaccacaaccgggaacataaaccaaaggaccgtcaccacc
accagtgttaacactacatctgtagtaaagtctattggccaggcatcagtttcttcagca
gttactcaaagcatccgaacagctgctagtggccttcgaaacctctctccaaatattccc
attaaagttggcggcagcagcagcagtaaagcctccacccaggtcatggtcacaccggag
acactggaaaatgtaaagaaatgtaaaaacttcctgatcactttaatgaagctggcatcg
agtgggacccgctcacctgacatggcacagaatgttcgagcactggtcaaagaccttctg
gatggacgcctggaagctgaggagttcactgaaaaactttacatggagctgaaatcatct
ccgcaaccatacctggtgccttttctcaaaaggagccttcctgctgtgcgtcagctcact
ccaaactctcagcacttcatccagcagtgtgagcagcccaaaacctcctcttcatccaca
gtcagcagcagtgcccagaaaattgccctttcctcctcccccaccatttctcagcctctc
cgaggcagtgttcctgccagaccacctcaaatggtgacccggcaaaccaaaggagtgatt
gtggagcaacgcgtgacctcttcaccccgtgttgggttgctagtgcagaaccacacccag
cccaagcagccaatcattcagaccaacacgcaggcagcaggagctttcaggaggcagtat
tctctccaggcatctaaaaccccctctgcaccaactcaagcagcacaaacacacaatttc
aaggacagcacctcaggctcgttccgtgaggatgatgacataaatgatgtagcctccatg
gcgggtgttaacgtgaacgaggagaatgctcgcattttggcgtccagttcagagctggtg
ggcaccgtggtgcgctcatgtagggacgagccctttctgcagaccacagcgctgcaacac
agagtgcttcaaattggtaactctctgggtgttgaagaggtgaatcctgatgtcctcggg
ttgctgtctcatgccacgcaggaaagacttcgagatctggtggaaaaactcactgttata
gcacatcatcattatatttcttacagggatgactggcggaacattcagaccagtgacaca
cgctcccagctaaaattcctggagcagctggagaaagtggagaaacaaaggagagaagaa
gaggagagggaaaccctgttgcgaatcgccaagagccgctcgagcagtgaggaccctgag
cagcttaggctcaaacagagagcgaaagagatgcagcagctggagctagctcagatggag
cacagagatgctaacctggcagcactagcggctctggggcctcgcaagaggaaacctcta
gactcttccagcttggggactaaccaggttctgggtttacgtgcacatagaactgctcag
agggttccaacacgtgtgactttcagagatctgatcttctgcatggaacaggaccgaaca
cttagacacactcttacactttacaatgctttcttacggtag
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