Clarias gariepinus (North African catfish): 128515261
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Entry
128515261 CDS
T10780
Symbol
cpsf2
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
128515261 (cpsf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgar03019
]
128515261 (cpsf2)
Messenger RNA biogenesis [BR:
cgar03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
128515261 (cpsf2)
U7-dependent histone pre-mRNA processing factors
128515261 (cpsf2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Anti-Pycsar_Apyc1
Lactamase_B_2
Motif
Other DBs
NCBI-GeneID:
128515261
NCBI-ProteinID:
XP_053345345
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Position
27:complement(13944126..13953875)
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AA seq
787 aa
AA seq
DB search
MTSIIKLTAVSGVQEESALCYLLQVDEFRFLLDCGWDESFSMDIIDAMKRYVHQVDAVLL
SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTENFSLFTLDDVD
SAFDKIQQLKYSQIVNLKGKGHGLSITPLPAGHMLGGTIWKIVKDGEEEIIYAVDFNHKR
EIHLNGCSLEAINRPSLLITDSINATYVQPRRKQRDEQLLTNIMETLRNDGNVLIAVDTA
GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN
NPFQFRHLSLCHSLADLARVPSPKVVLCSQPDLESGFSRELFIQWCQDSKNSIILTYRTT
PGTLARYLIDHPGEKMIDLEIRKRIKLEGKELEEYLEKEKIKKETAKKLEQAKEVDVDSS
DESDMDDDLEQPAAVKTKHHDLMMKGEGGRKGGFFKQARKTYPMFPVHEERIKWDEYGEI
IRPEDFLVPELQATEEEKSKLESGLANGDEPMEQDLSDVPTKCISIKETLEIRSRVTYID
YEGRSDGDSIKKIINQMKPRQLVIVHGPPEASQDLAESCKAFSGKDIKVYTPKLQETVDA
TSETHIYQVRLKDSLVSSLQFCKAKDTELAWIDGVLDMRVVKVDTGVLPEDGDTREETED
GEITMDVTPDLMAEPSNVATQRAMKTLFGEDEKEISEESDVIPTLEPLPATEAPGHQAVF
INEPRLSDFKQVLLREGIQAEFVGGVLVCNNMVAVRRTEAGRIGLEGCMCEDYYRIRELL
YQQYAVV
NT seq
2364 nt
NT seq
+upstream
nt +downstream
nt
atgacgtccatcatcaagttgacggctgtgtccggggtgcaggaggagtctgctctctgc
tacctgttacaggtggacgagtttcgctttctgctcgactgcggctgggacgagagcttc
tccatggacatcatagatgctatgaaaaggtatgtccatcaggtcgatgcggtacttctg
tcccacccagatccacttcatctcggcgctttgccctatgctgttggcaaactgggtctc
aactgtgccatctacgccaccatccctgtgtataagatgggccagatgttcatgtacgac
ctgtatcagtctcgtcacaacactgagaacttcagcctattcacgctggatgatgtggac
tcagcttttgataaaatacagcagttgaaatactcacagattgtgaatttaaaaggtaaa
ggacatggtttgtccatcactcctctccctgcgggtcacatgctcggtgggaccatttgg
aaaattgtaaaggatggagaagaggagattatttatgctgtggatttcaaccacaagcga
gaaattcacctgaatggctgttcccttgaggcaatcaatcgcccctccctgctcatcacc
gactccatcaatgccacttacgttcagcctcgcaggaaacagcgtgatgagcagctcctg
acgaacatcatggaaacgctgcgtaatgacggcaatgtgctgatcgcagtggatactgca
ggccgtgtgctggagcttgctcagctgctggatcagatctggaggacaaaggacgcagga
ctgggcgtttactcacttgccttgctgaacaatgtcagctacaatgtggtggagttctcc
aagtctcaggtggagtggatgagtgacaagttgatgcgatgcttcgaagacaagagaaac
aacccgttccagtttcgtcacctgtctttgtgccacagtttagcagatttggcacgagtg
ccaagtcccaaagtggtgctttgcagccagcctgatctggagtcaggtttctcacgagag
ctttttattcagtggtgccaggactccaaaaactccatcatcctgacatatcgcaccaca
ccgggcacactggcacgctatctcatagaccatccgggagagaagatgatagatttagag
ataagaaaaaggatcaagcttgaaggcaaggaactggaggagtatctggaaaaagagaaa
ataaagaaagaaactgctaaaaaactggagcaagcgaaagaggtggatgtggactcgagc
gatgagagtgatatggatgatgatctggagcagccagccgcagtcaagacaaaacatcac
gatctgatgatgaaaggtgaaggagggcgtaagggaggcttcttcaaacaggccagaaag
acataccctatgtttcctgttcatgaggagaggattaagtgggacgagtacggagagatc
attaggcctgaggatttcctggttcccgagctgcaggccacagaagaggagaagagtaag
ctggagtcaggcctggctaatggagacgagcccatggaacaggacctttctgacgtcccc
accaagtgcatctccattaaagagaccctagaaatcagatctcgagtcacttacatagac
tacgagggccgttcagatggagactccattaagaagattataaaccagatgaagcctcgg
cagctggttattgtacatggacctccagaagctagtcaggacctggccgagtcctgcaag
gcctttagtggtaaagatatcaaagtctatacacccaaactgcaagagactgtggatgca
accagcgaaacacacatctaccaggtcagactgaaggactcgttagttagctctctgcag
ttctgcaaggccaaagacacagagctggcttggatcgatggcgtgctggatatgcgagtg
gtgaaggtggacacgggcgtgctgccggaggacggggacaccagggaggagacagaggac
ggagagataaccatggatgtgacccctgacctcatggctgagcccagcaatgtagcaacg
cagcgggccatgaagacactgttcggagaggacgagaaggagatctcggaggagagtgat
gtcattcctacactggagccgctccctgctactgaagctccgggtcaccaggctgtattc
attaacgagccaagactctcagactttaagcaggttcttctgcgtgaggggatccaggcc
gagtttgtgggcggagtgctcgtctgtaataacatggtggctgtgcgcaggacggaagca
ggccggatcgggctggagggctgcatgtgtgaggattactacaggattcgggagctgctg
tatcagcagtatgccgtggtgtag
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