Clarias gariepinus (North African catfish): 128515537
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Entry
128515537 CDS
T10780
Symbol
ddx39b
Name
(RefSeq) DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar03013
Nucleocytoplasmic transport
cgar03015
mRNA surveillance pathway
cgar03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128515537 (ddx39b)
09122 Translation
03013 Nucleocytoplasmic transport
128515537 (ddx39b)
03015 mRNA surveillance pathway
128515537 (ddx39b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgar03019
]
128515537 (ddx39b)
03041 Spliceosome [BR:
cgar03041
]
128515537 (ddx39b)
Enzymes [BR:
cgar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
128515537 (ddx39b)
Messenger RNA biogenesis [BR:
cgar03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
128515537 (ddx39b)
Spliceosome [BR:
cgar03041
]
Complex C
Other components
EJC/TREX
128515537 (ddx39b)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
128515537 (ddx39b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
AAA_19
Motif
Other DBs
NCBI-GeneID:
128515537
NCBI-ProteinID:
XP_053345592
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All DBs
Position
28:9396736..9413186
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AA seq
436 aa
AA seq
DB search
MTENDVDSELLDYEEDEVDAAGGVGDGGLVGDGSTVAFKKEGLKGSYVSIHSSGFRDFLL
KPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTG
QVSVLVMCHTRELAFQISKEYERFSKYMPAVKVAVFFGGLPIKKDEETLKRESPHIVVGT
PGRILALSRNKSLNLRHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLS
KEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVI
FVKSVQRCIALAQLLVEQNFPAIAIHRAMPQEERLARYQQFKDFQRRILVATNLFGRGMD
IERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDESDARTLNDVQDRFEVNIS
ELPEEIDISSYIEQTR
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atgacggagaacgacgtggacagcgagctgttagactacgaggaggatgaggtggacgcg
gcaggaggcgtcggggacggaggtctcgtcggggacggcagcactgtggcctttaagaaa
gagggactcaaaggatcttacgtttccatccactcctcggggttcagggacttcctgtta
aagcccgagctcctcagggctatcgtggactgcggcttcgagcatccgtccgaagttcag
catgagtgcattccacaggccatcctgggcatggacgtgttgtgccaggctaagtcaggt
atggggaagacggccgtttttgtcttggcgacacttcagcagctcgagccagtgaccgga
caggtgtcagtgctggtgatgtgtcatacccgagaactggctttccagatcagcaaggag
tacgagcgcttctccaagtacatgcctgctgtcaaggtggcggtgttctttggcggtttg
cccataaagaaggacgaggagacgctgaagagagagagtcctcacatagtggtggggacg
cccggccgcatcctggccctttcgcgcaacaagagtctcaacctgcgccacatcaaacac
ttcatcctggacgagtgcgacaagatgctggaacagctcgacatgcgacgtgacgttcag
gagattttccgcatgaccccacacgagaagcaggtcatgatgttcagcgccaccttgagc
aaagaaatccggcccgtctgccgaaagttcatgcaagaccccatggagatctttgtggac
gacgagaccaagctgaccctgcacggcctgcagcagtactacgtcaagctgaaggacaac
gagaagaacaggaagctgttcgatctgctggatgtgctggagttcaaccaggtggtgatc
tttgtgaagtcagtgcagcgttgcatcgctcttgctcagctgctcgtggagcagaacttc
cccgccatcgccatccacagagcaatgcctcaggaggagaggctcgctcgatatcagcag
tttaaagactttcagaggcgcatcctcgtggccacgaacctgttcggcagaggaatggac
atcgagagagtcaacatcgccttcaactacgacatgcccgaggattcagacacgtacctg
cacagggtggccagggcaggcaggtttggaacgaaaggtctggccatcacgttcgtgtcg
gacgagagcgatgcccggacgctgaacgacgttcaggacaggttcgaggtgaacatcagc
gagcttccagaggagatcgacatctcgtcttacattgagcagacgcgataa
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