Clarias gariepinus (North African catfish): 128515645
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Entry
128515645 CDS
T10780
Symbol
hdac1
Name
(RefSeq) histone deacetylase 1 isoform X1
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar03082
ATP-dependent chromatin remodeling
cgar03083
Polycomb repressive complex
cgar04110
Cell cycle
cgar04330
Notch signaling pathway
cgar04350
TGF-beta signaling pathway
Brite
Enzymes [BR:
cgar01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
128515645 (hdac1)
Chromosome and associated proteins [BR:
cgar03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
128515645 (hdac1)
HDAC complexes
Sin3A-HDAC complex
128515645 (hdac1)
BRAF-HDAC complex
128515645 (hdac1)
REST complex
128515645 (hdac1)
SHIP complex
128515645 (hdac1)
MiDAC complex
128515645 (hdac1)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
128515645 (hdac1)
Heterochromatin formation proteins
Other heterochromatin formation proteins
128515645 (hdac1)
Chromatin remodeling factors
NuRD complex
128515645 (hdac1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
128515645
NCBI-ProteinID:
XP_053345713
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All DBs
Position
28:10635187..10651593
Genome browser
AA seq
484 aa
AA seq
DB search
MALTSQGTKKKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKA
NAEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVA
GAVKLNKQQTDIAINWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHH
GDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEA
IFKPIMAKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTIKGHAKCVEYIKSFNMPLLMLG
GGGYTIRNVARCWTFETAVALDSTIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNDYL
EKIKQRLFENLRMLPHAPGVQMQAIPEDAVQEDSGDEEDDPDKRIPIRAHDKRIACDEEF
SDSEDEGQGGRRNAANYKKTKRVKTEEEKDGEEKKGDCTDVKEEEKTPEEKMDTKGPKEE
LKTT
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atggcgctgacttcccaaggaacaaagaagaaagtttgctattattatgacggtgatgtt
gggaattattactatggccagggtcaccccatgaagccccaccgcatccgcatgacccac
aacctgctcctcaactatggtctctacaggaagatggagatctacaggccacacaaagcc
aacgctgaagaaatgaccaaatatcacagtgacgactacatcaagttcctccgttccatc
cgcccagataacatgtccgaatacagcaagcagatgcagagatttaatgtgggtgaagat
tgtcccgtgttcgacggcctgtttgagttctgtcaactttcaacaggtggctctgtcgcg
ggtgccgtaaaactaaacaagcagcagacagacatcgccattaattgggcgggcggcctt
caccatgccaagaagtcggaggcgtctggtttctgctacgtcaacgacattgtgctggcc
atcctggaactactcaagtaccatcaaagagttctgtatatcgatattgacatccaccac
ggtgatggagtagaggaggccttctacaccacagaccgtgtcatgaccgtgtctttccat
aagtatggagagtacttccctggcacaggcgacctcagagacattggtgctggaaagggc
aaatactatgctgtgaactacccactcagggacgggattgacgacgagtcctatgaagcc
atattcaaacctataatggccaaagtgatggagatgtaccagccgagcgccgtagtgctt
caatgtggtgctgattctctgtctggggacaggctgggctgctttaacctcaccatcaaa
ggtcatgccaagtgtgtcgagtacattaagagttttaacatgcccttactcatgctgggt
ggaggaggctacaccatcagaaatgtggcccggtgttggacctttgagacggctgtcgcc
ttggacagcactattcctaacgagcttccatacaatgactactttgagtatttcggacct
gacttcaagctccacatcagtccctccaacatgaccaaccagaacacaaatgactaccta
gaaaagatcaagcagcgtctgtttgagaacctgcgcatgcttcctcatgctccaggggtg
cagatgcaggcgatcccagaggacgccgtacaggaggacagtggggacgaggaggacgac
ccagacaaacgcatccccatccgtgcccacgataagcggatagcctgcgacgaagagttc
tccgattccgaggatgaagggcaaggcggccgcaggaacgcagcgaattacaagaagaca
aagagggtgaagacagaggaagagaaagatggagaagagaagaaaggtgattgcacggac
gtgaaggaggaggagaaaaccccagaagaaaaaatggacacaaaagggccaaaagaagag
ctgaaaacgacctga
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